FFCP PHASE1:Hg19::chr12:51663682..51663727,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57228 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=26918 | |||
|TSSclassifier=strong | |||
|UniProt=Q0VAQ4 | |||
|association_with_transcript=5bp_to_uc001ryc.1_5end | |||
|cluster_id=chr12:51663682..51663727,- | |||
|description=CAGE_peak_5_at_SMAGP_5end | |||
|id=chr12:51663682..51663727,- | |||
|ontology_enrichment_celltype=CL:0000055!2.10e-13!180;CL:0000548!1.61e-12!679;CL:0000004!1.61e-12!679;CL:0000255!1.61e-12!679;CL:0002321!1.61e-12!248;CL:0000220!1.72e-12!246;CL:0000057!2.00e-12!75;CL:0000012!8.55e-12!682;CL:0000066!9.92e-11!254;CL:0002371!2.50e-08!591;CL:0000144!3.35e-08!625;CL:0000183!5.09e-07!59;CL:1000449!8.06e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.99e-08;15!CL:0002620;1.76e-07;23!CL:0002681;5.61e-07;12!CL:0002584;5.61e-07;12!CL:0000057;6.54e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.45e-13,76;CL:0002321,5.12e-09,250;CL:1000449,6.13e-08,15;CL:0002620,1.21e-07,23;CL:0000066,1.90e-07,253;CL:0002681,6.54e-07,12;CL:0002584,6.54e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!2.89e-13!95;UBERON:0002100!8.98e-13!216;UBERON:0003104!3.49e-12!238;UBERON:0009142!3.49e-12!238;UBERON:0005256!4.36e-11!143;UBERON:0000914!3.70e-10!83;UBERON:0002329!3.70e-10!83;UBERON:0003077!3.70e-10!83;UBERON:0003059!3.70e-10!83;UBERON:0007282!3.70e-10!83;UBERON:0009618!3.70e-10!83;UBERON:0007285!3.70e-10!83;UBERON:0000481!4.21e-10!347;UBERON:0000475!1.68e-09!365;UBERON:0000464!2.42e-09!104;UBERON:0000486!2.69e-09!82;UBERON:0003886!3.28e-08!63;UBERON:0002097!9.03e-08!40;UBERON:0004290!1.61e-07!70;UBERON:0000468!1.64e-07!659;UBERON:0002199!2.19e-07!45;UBERON:0002416!2.19e-07!45;UBERON:0002049!2.47e-07!79;UBERON:0007798!2.47e-07!79;UBERON:0002553!3.15e-07!70;UBERON:0003914!4.12e-07!118;UBERON:0000119!5.69e-07!312;UBERON:0000490!5.98e-07!138;UBERON:0006555!6.20e-07!17;UBERON:0005103!6.20e-07!17;UBERON:0000083!6.20e-07!17;UBERON:0009201!6.20e-07!17;UBERON:0004819!6.20e-07!17;UBERON:0006553!6.20e-07!17;UBERON:0003074!6.20e-07!17;UBERON:0003060!6.20e-07!17;UBERON:0001444!7.42e-07!48;UBERON:0004211!8.06e-07!16;UBERON:0001285!8.06e-07!16;UBERON:0007684!8.06e-07!16;UBERON:0003220!8.06e-07!16;UBERON:0004208!8.06e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.99e-08;15!UBERON:0004819;3.99e-08;15!UBERON:0001285;3.99e-08;15!UBERON:0007684;3.99e-08;15!UBERON:0002067;6.78e-08;9!UBERON:0003102;7.72e-08;50!UBERON:0002097;2.77e-07;41!UBERON:0001225;5.61e-07;12!UBERON:0008987;5.61e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.06e-14,99;UBERON:0002097,1.79e-09,41;UBERON:0002199,4.16e-09,46;UBERON:0002416,4.16e-09,46;UBERON:0006555,4.36e-08,16;UBERON:0004819,4.36e-08,16;UBERON:0002067,4.85e-08,9;UBERON:0004016,4.85e-08,9;UBERON:0010083,4.85e-08,9;UBERON:0004211,6.13e-08,15;UBERON:0009773,6.13e-08,15;UBERON:0001231,6.13e-08,15;UBERON:0001285,6.13e-08,15;UBERON:0007684,6.13e-08,15;UBERON:0004208,6.13e-08,15;UBERON:0000033,4.51e-07,56;UBERON:0001225,6.54e-07,12;UBERON:0008987,6.54e-07,12;UBERON:0007503,6.75e-07,78 | |||
|phase1_expression=0.54503513781167,0,0,0,0,0.872338524100369,0,0.631719873426831,0,3.44027511102112,6.97801167972428,2.18441372130172,0.263766978228454,1.23766352960047,0.662794751455832,0.672325146451775,1.20538905604795,0.730310090387373,0.487932798790507,1.84681587115182,3.26401105990805,1.25381888591235,0.286235987131057,1.50561867580173,0.87879847716362,0,0,0,0,0,0,1.83884244895785,2.409647350226,1.10926203050036,0,0,0.293600439334847,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,1.04535523804977,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0.670700859703636,0.255725123687061,0.361439152384566,0.50133791063589,0.144846518960824,1.5905718941022,0.973269740605272,1.32348744029695,1.77383517970051,0.966182642624386,0.654895377488563,6.9216104775583,3.70784442784429,0,0,0,0,0,0,3.9752481473341,0.860234595106124,2.77712401286075,2.26123176769604,2.93649605346934,3.30141650328081,1.8809546988313,1.55050055501597,0.35576626268671,0.33472061276467,1.20848795132744,0,0.732186172644509,4.77962004449629,1.62028389576352,1.42879565254528,0.898117490504679,2.81528701208306,3.06633274931766,4.74632829784064,1.83201743930407,1.31780417436063,0,3.05265836499774,0.993943903390637,1.13967460498122,0.926864265692532,0.573673241497627,2.83734705758686,1.12135520028461,0,0.74000264525148,0.311211035399766,1.75123873690594,1.14423332179421,2.11900398702904,1.15235184896,15.2308930691968,5.93104145977609,3.4228309292667,5.52960118041664,3.99277295388801,6.96053660782966,7.86524517532592,2.44985005505872,5.77321291365309,1.75653827998801,5.94001428641027,1.97813543422845,8.19145225744224,7.90479955997862,8.75347792561144,7.38199267244589,3.3247693858102,2.19488810440419,3.0648779579902,1.50238058906597,2.7223723958405,1.79389635688862,2.98980344345994,2.11931901159562,0.300091096084402,3.40073346486848,1.28820270022815,1.67505170698431,1.85653965465393,1.75386609290158,1.00973509697646,1.01254888506529,1.2931684545505,2.4850671476163,2.61955455391865,2.20428770003634,1.35282597214308,3.00020732649918,1.14721838155602,1.09776335516636,0.265059536642971,1.16193942869518,0.725627385107593,2.01856680700503,0.72995471815166,1.56449532329816,7.07565032012174,12.4321429217232,4.17931135228781,2.88751792667834,0.354920400119532,0,0,0.441175890929576,0,0,0.134831308160164,0,0.769494313892781,0,1.40241773803446,0,0,0,0.982827216677626,0,0,1.59884970106048,0.686271241194102,3.07300799144152,2.24803506515239,1.91005047582099,0.277765335475589,6.51616610620649,8.31947828223663,1.44331342025273,0.579652024875384,1.6437217193015,0.144366447761074,0,0.190254152234598,2.37061319387782,2.57545848628462,0,0,0,2.81201501960331,1.34385702559088,1.84307626415102,1.61205340865127,0.871901815541886,3.4504441124869,3.4486426652716,0.264145302039678,0.207328115540772,0.144119953416961,0.6312121671319,0.063497894292169,0,0,0,0,0,0,3.25180144601546,1.74384027533312,2.71351657537515,0.775630294546667,3.57656445851882,1.690605505112,0.26593811658487,4.16029747645464,4.8869401109807,2.83698264046557,6.12771011737029,0.57191197463259,2.17048642156577,0.823240336780769,2.28015329005615,0.355391948742546,3.95975936466715,0,0,0.099972991182057,0,0,0,2.15662369942424,2.29723871668228,9.98458335285029,0.579125226670317,0.61642896765115,1.25342674267927,0,0.788123040807709,0.431255149719035,1.15508732651774,0,2.60279707715243,0,0,0,0,0,0,1.10422342547226,3.00102312635806,2.71265023699736,1.45579603071565,2.85486382075459,1.89242898040722,1.52283839490527,4.21324539618807,4.5481500811197,5.17365356462525,3.98535359121262,3.68738337083406,4.25729710893606,4.30762546418029,2.40200396667599,0.206768026122887,0.215714200818617,0.426910231213777,0.606255142892519,1.66435439510497,0.604780586659361,0.744323423456331,0.61384789315225,0.280660094433074,0.512556597022804,0.511707249066704,0.64341568457443,1.48418066444991,3.23840356985577,3.9063579568888,5.58464660893902,1.03850885836724,3.60252173225874,1.69203229428271,3.00759705454927,0.828728900423067,0.574072240823034,0.182091168006717,0.655622074797121,1.80479845162965,1.00119938235739,3.13739907670742,2.92278449306521,1.05551628892876,1.13733384070897,3.74206151608334,1.51141141271498,4.62681758070868,1.35473218771926,2.50844886927427,7.64628819135115,4.15538004464362,6.49236788694317,0,0,0.512900250232778,0.656029291399411,0,0.721287081534056,0.0915694648183434,0,1.14853107599234,1.30012049207304,3.21367859688319,2.32009723901093,0.924291702687866,0.767518373630648,1.65403886981437,1.39646318328756,1.30515024522806,1.36362603865761,0.890320356467374,0.826424576804891,1.15314040419064,0.638063562472921,1.0115778085555,0.929691098594572,0.94443704049192,1.3940745403212,1.23213432070436,2.12922412126809,0,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| |||
|short_description=p5@SMAGP | |||
}} |
Latest revision as of 19:56, 18 September 2015
Short description: | p5@SMAGP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SMAGP_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_uc001ryc.1_5end |
EntrezGene: | SMAGP |
HGNC: | 26918 |
UniProt: | Q0VAQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.45e-13 | 76 |
embryonic cell | 5.12e-09 | 250 |
epithelial cell of nephron | 6.13e-08 | 15 |
skin fibroblast | 1.21e-07 | 23 |
epithelial cell | 1.90e-07 | 253 |
kidney cortical cell | 6.54e-07 | 12 |
renal cortical epithelial cell | 6.54e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.06e-14 | 99 |
skin of body | 1.79e-09 | 41 |
integument | 4.16e-09 | 46 |
integumental system | 4.16e-09 | 46 |
excretory tube | 4.36e-08 | 16 |
kidney epithelium | 4.36e-08 | 16 |
dermis | 4.85e-08 | 9 |
dermatome | 4.85e-08 | 9 |
future dermis | 4.85e-08 | 9 |
nephron epithelium | 6.13e-08 | 15 |
renal tubule | 6.13e-08 | 15 |
nephron tubule | 6.13e-08 | 15 |
nephron | 6.13e-08 | 15 |
uriniferous tubule | 6.13e-08 | 15 |
nephrogenic mesenchyme | 6.13e-08 | 15 |
head | 4.51e-07 | 56 |
cortex of kidney | 6.54e-07 | 12 |
renal parenchyma | 6.54e-07 | 12 |
epithelial vesicle | 6.75e-07 | 78 |