FFCP PHASE1:Hg19::chr12:65672443..65672553,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=253827 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27375 | |||
|TSSclassifier=strong | |||
|UniProt=F5H6G9,F5H4C9 | |||
|association_with_transcript=0bp_to_ENST00000535664,ENST00000538725,ENST00000540804,ENST00000541189,ENST00000541897,uc001ssm.2,uc001ssn.2,uc009zqp.2_5end | |||
|cluster_id=chr12:65672443..65672553,+ | |||
|coexpression_cluster_id=C3110 | |||
|description=CAGE_peak_1_at_MSRB3_5end | |||
|id=chr12:65672443..65672553,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.92e-25!180;CL:0000057!4.48e-17!75;CL:0000222!2.56e-12!119;CL:0000680!3.88e-12!57;CL:0000056!3.88e-12!57;CL:0000355!3.88e-12!57;CL:0000187!2.25e-11!54;CL:0000192!8.88e-11!42;CL:0000514!8.88e-11!42;CL:0000183!1.10e-10!59;CL:0000359!6.71e-10!32;CL:0000136!1.31e-08!15;CL:0000393!2.52e-08!60;CL:0000211!2.52e-08!60;CL:0002620!3.21e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.29e-09;32!CL:0002620;2.40e-08;23!CL:0000192;3.44e-08;43!CL:0000136;7.72e-08;13!CL:0000057;2.37e-07;73!CL:0000187;8.35e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.87e-18,76;CL:0000222,9.02e-13,121;CL:0000680,1.94e-12,58;CL:0000056,1.94e-12,58;CL:0000355,1.94e-12,58;CL:0000187,1.15e-11,55;CL:0000192,4.69e-11,43;CL:0000514,4.69e-11,43;CL:0000359,5.42e-10,32;CL:0000136,1.10e-08,15;CL:0000393,1.76e-08,61;CL:0000211,1.76e-08,61;CL:0002620,2.71e-08,23 | |||
|ontology_enrichment_development_v019=CL:0000514;3.44e-08;43!CL:0000355;9.13e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!8.57e-20!84;UBERON:0002049!2.41e-16!79;UBERON:0007798!2.41e-16!79;UBERON:0000468!2.44e-16!659;UBERON:0001009!2.45e-16!113;UBERON:0000914!3.67e-16!83;UBERON:0002329!3.67e-16!83;UBERON:0003077!3.67e-16!83;UBERON:0003059!3.67e-16!83;UBERON:0007282!3.67e-16!83;UBERON:0009618!3.67e-16!83;UBERON:0007285!3.67e-16!83;UBERON:0000475!7.56e-16!365;UBERON:0000055!1.31e-15!69;UBERON:0001981!1.51e-15!60;UBERON:0007500!1.51e-15!60;UBERON:0004537!1.51e-15!60;UBERON:0006965!1.51e-15!60;UBERON:0004535!2.68e-15!110;UBERON:0000481!9.85e-15!347;UBERON:0002100!4.26e-14!216;UBERON:0002385!5.05e-14!63;UBERON:0001015!5.05e-14!63;UBERON:0000383!5.05e-14!63;UBERON:0004290!5.61e-14!70;UBERON:0000467!7.45e-14!625;UBERON:0000480!1.15e-13!626;UBERON:0001134!2.11e-13!61;UBERON:0002036!2.11e-13!61;UBERON:0003082!2.11e-13!61;UBERON:0005256!5.58e-13!143;UBERON:0003914!9.46e-13!118;UBERON:0000477!1.23e-12!286;UBERON:0000486!1.66e-12!82;UBERON:0003104!5.80e-12!238;UBERON:0009142!5.80e-12!238;UBERON:0001637!9.83e-12!42;UBERON:0003509!9.83e-12!42;UBERON:0004572!9.83e-12!42;UBERON:0000483!1.01e-10!309;UBERON:0000119!1.14e-10!312;UBERON:0004111!1.48e-10!241;UBERON:0007100!1.99e-10!27;UBERON:0000490!2.84e-10!138;UBERON:0004573!1.64e-09!33;UBERON:0004571!1.64e-09!33;UBERON:0000948!2.76e-09!24;UBERON:0005498!2.76e-09!24;UBERON:0004140!2.76e-09!24;UBERON:0009881!2.76e-09!24;UBERON:0004141!2.76e-09!24;UBERON:0003084!2.76e-09!24;UBERON:0007005!2.76e-09!24;UBERON:0004139!2.76e-09!24;UBERON:0004291!2.76e-09!24;UBERON:0000926!5.78e-09!448;UBERON:0004120!5.78e-09!448;UBERON:0006603!5.78e-09!448;UBERON:0003102!1.78e-08!95;UBERON:0000025!1.11e-07!194;UBERON:0002050!1.32e-07!605;UBERON:0005423!1.32e-07!605;UBERON:0000923!2.47e-07!604;UBERON:0005291!2.47e-07!604;UBERON:0006598!2.47e-07!604;UBERON:0002532!2.47e-07!604;UBERON:0003103!3.42e-07!69;UBERON:0000922!3.54e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;2.13e-10;25!UBERON:0000948;3.01e-09;22!UBERON:0004573;7.92e-09;33!UBERON:0004571;7.92e-09;33!UBERON:0001637;1.04e-08;42!UBERON:0003509;1.04e-08;42!UBERON:0004572;1.04e-08;42!UBERON:0007500;9.17e-08;56!UBERON:0001981;9.17e-08;56!UBERON:0004537;9.17e-08;56!UBERON:0000055;6.59e-07;65!UBERON:0002385;8.63e-07;31!UBERON:0001015;8.63e-07;31!UBERON:0000383;8.63e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,2.86e-19,83;UBERON:0002049,6.01e-16,78;UBERON:0007798,6.01e-16,78;UBERON:0001009,1.42e-15,112;UBERON:0007500,4.13e-15,59;UBERON:0001981,4.13e-15,59;UBERON:0004537,4.13e-15,59;UBERON:0006965,4.13e-15,59;UBERON:0000055,5.08e-15,68;UBERON:0007524,1.17e-14,73;UBERON:0004535,1.52e-14,109;UBERON:0003104,2.14e-14,160;UBERON:0009142,2.14e-14,160;UBERON:0002385,2.40e-14,64;UBERON:0001015,2.40e-14,64;UBERON:0000383,2.40e-14,64;UBERON:0002329,2.65e-14,71;UBERON:0003059,2.65e-14,71;UBERON:0007282,2.65e-14,71;UBERON:0004290,2.65e-14,71;UBERON:0009618,2.65e-14,71;UBERON:0003077,3.47e-14,72;UBERON:0007285,3.47e-14,72;UBERON:0001134,1.02e-13,62;UBERON:0002036,1.02e-13,62;UBERON:0003082,1.02e-13,62;UBERON:0007503,2.16e-13,78;UBERON:0000486,8.19e-13,83;UBERON:0003914,1.88e-12,117;UBERON:0005256,2.14e-12,122;UBERON:0001637,7.59e-12,42;UBERON:0003509,7.59e-12,42;UBERON:0004572,7.59e-12,42;UBERON:0002100,3.10e-11,199;UBERON:0000490,4.29e-11,148;UBERON:0007100,1.59e-10,27;UBERON:0000483,4.48e-10,306;UBERON:0004111,4.85e-10,240;UBERON:0000119,5.02e-10,309;UBERON:0004573,1.34e-09,33;UBERON:0004571,1.34e-09,33;UBERON:0000948,2.27e-09,24;UBERON:0005498,2.27e-09,24;UBERON:0004140,2.27e-09,24;UBERON:0009881,2.27e-09,24;UBERON:0004141,2.27e-09,24;UBERON:0003084,2.27e-09,24;UBERON:0007005,2.27e-09,24;UBERON:0004139,2.27e-09,24;UBERON:0004291,2.27e-09,24;UBERON:0003102,9.51e-09,99;UBERON:0000025,4.12e-07,192;UBERON:0002199,4.38e-07,46;UBERON:0002416,4.38e-07,46;UBERON:0003103,4.72e-07,68;UBERON:0000947,9.78e-07,21;UBERON:0010191,9.78e-07,21 | |||
|phase1_expression=60.8622570556365,52.6687288771819,60.6103937612676,77.0564397319104,77.3242693359208,63.6807122593269,53.1929744153452,18.3198763293781,14.626395179191,8.10921990454979,4.18680700783456,6.55324116390517,7.91300934685361,11.1389717664042,20.5466372951308,30.9269567367817,40.9832279056304,43.088295332855,33.667363116545,4.92484232307152,9.79203317972414,10.3440058087769,10.304495536718,6.56997240349844,15.1906593909711,0,0,0,0.786728553697808,0.383829398097213,0.77408061658038,2.75826367343678,8.13255980701275,2.58827807116751,0,0,8.22081230137572,1.10799081706375,0.401088894940283,0.217010870715852,0,0,0,0.145398238779565,0.377875943688809,0.485168122375632,0.232429036905685,0.411167888021826,0,0.575384784644301,0,0.47296445977717,0,0,1.35426486594342,0,0,0,1.22433556948361,0.320929027076094,0.639337125799041,0.659702600373432,0.199463657621632,0.426224750532694,0.870627715885752,0,0.622822248995575,0.502497330513487,0.521482918420201,0,4.84319602106695,0.368277635987565,0.632924774881769,0.422510572623884,0.212604299965044,0.209658645508376,0.22465726229299,0.150176892841506,0,0,0.19891667719909,0,0,1.09227722252426,0,0,0,0.574752439954483,0,0,0,0.587237189370939,0,11.8954195721123,5.60508562981536,6.05783394982677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,73.1420598941885,14.0847180537764,34.3950291359097,45.9027723528399,36.5976674764199,24.0445221474967,15.1104329939709,21.411934293316,8.50813354476611,11.3081992705908,14.4049048536727,16.7653216637072,0.728590576585084,0.741568885568859,0,0,0,4.5313218618015,4.0039643754609,4.08603251462521,12.124506849369,20.645630282547,12.844198559481,16.3939303157963,20.5554723742854,15.6817283905838,13.1666828918191,10.5950871259425,12.0960529313481,16.0665894127042,19.7386365383482,19.7670747486813,15.1318475679865,19.8538063386769,14.5825550618717,15.4488529931458,20.2076435363553,15.8782187481484,7.66583187329416,9.49265659568129,19.0529813687624,0,0,3.48875241714027,78.024596416165,40.5217637326655,32.1754309376122,43.8860029745685,29.4374757224636,40.3687872102461,30.9572087616144,40.2068103919971,24.2744607611818,32.3305612967251,25.0096711763592,14.5303130539134,10.37116664064,10.3101430006871,6.24320153660641,6.27519003698894,11.0592023608333,14.9141813277581,17.4822779917582,17.9777032578878,18.1697212416855,10.072414019565,20.4585046728016,36.8280885757437,62.3112661781963,22.7540340484507,22.2771623963034,9.25848626747364,10.0094815897571,26.8752192019657,46.5316278133688,66.2013638925882,57.0904623845068,26.3162664931249,46.4619156434152,51.2537733164562,35.3926274936468,39.9121157792255,35.2439649995461,44.8294539679395,45.0402792322447,54.514755313929,42.3850972451214,43.4186091699877,41.9747537808885,35.0771943296822,44.0211894720602,50.7790575067307,40.8641027468275,6.3776081543888,11.7280831854059,7.1701148847251,0.365921118388786,0.530119073285941,1.16193942869518,1.14027160516907,1.00928340350251,0.36497735907583,26.5964204960687,32.8052878478371,16.5761905622977,38.5425380266543,29.597058748453,10.7659188036258,9.4407426443737,9.64044119533928,8.71322384585912,9.80457498415828,7.82993043066619,11.5954925017741,5.88664395376038,11.5424147083917,14.0249536378683,21.0362660705169,25.1060146912154,20.5812195939759,0,0.982827216677626,4.72631925345123,0,0.737930631258681,10.6372042385086,8.9995234035073,2.24803506515239,1.70899253099772,3.24059558054854,12.7065239071027,7.27954349695705,2.88662684050547,10.7815276626821,33.6962952456808,11.693682268647,12.9635943521451,21.8792275069788,0.790204397959275,0,0,0,0,16.8720901176199,12.9346238713122,9.07360622351273,8.50805965677059,6.68458058582112,9.58456697913028,4.92663237895944,3.87413109658195,1.4512968087854,3.89123874225796,1.13618190083742,3.04789892602411,3.05590740446622,3.51652341630141,8.55362230113526,8.53468189437585,1.8020583470635,4.28739648945867,11.7737638562629,4.3596006883328,8.2138880119464,43.6938399261289,10.7296933755565,12.67954128834,59.8360762315959,42.6430491336601,12.8603687131071,8.5109479213967,14.9196420249016,27.4517747823643,7.5967024754802,11.5253647149308,12.3779750031619,26.2990042069484,19.0068449504023,18.3878020006348,16.5591357134056,24.2934368572399,0,0,0,58.7080895954377,56.2823485587158,24.2482738569221,32.2862313868702,21.985966512891,21.6663765520274,0,0,0,0.128343036279748,3.04913549066956,2.60279707715243,0.773288812777695,1.34013012267479,4.46557126157214,0.749007023947182,0,1.65766205374414,18.5264152495901,8.50289885801451,15.1908413271852,74.8695101510906,57.8109923702804,55.3535476769111,64.544919660985,30.997448271955,22.7407504055985,22.7640756843511,35.2039567223781,32.4489736633398,32.6682390399992,3.72022199179207,7.20601190002797,0.620304078368662,0.647142602455851,0.320182673410333,1.21251028578504,16.6435439510497,3.93107381328584,34.2388774789912,46.1920539597068,43.5023146371264,29.3438651795555,64.9868206314713,50.82983908138,44.5254199334973,17.888324481108,22.9054625653934,15.3577781745823,14.01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| |||
|short_description=p1@MSRB3 | |||
}} |
Latest revision as of 22:24, 19 September 2015
Short description: | p1@MSRB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MSRB3_5end |
Coexpression cluster: | C3110_spindle_mesodermal_bone_Preadipocyte_basal_Sertoli_mesenchymal |
Association with transcript: | 0bp_to_ENST00000535664, ENST00000538725, ENST00000540804, ENST00000541189, ENST00000541897, uc001ssm.2, uc001ssn.2, uc009zqp.2_5end |
EntrezGene: | MSRB3 |
HGNC: | 27375 |
UniProt: | F5H6G9F5H4C9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.87e-18 | 76 |
mesodermal cell | 9.02e-13 | 121 |
muscle precursor cell | 1.94e-12 | 58 |
myoblast | 1.94e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.94e-12 | 58 |
muscle cell | 1.15e-11 | 55 |
smooth muscle cell | 4.69e-11 | 43 |
smooth muscle myoblast | 4.69e-11 | 43 |
vascular associated smooth muscle cell | 5.42e-10 | 32 |
fat cell | 1.10e-08 | 15 |
electrically responsive cell | 1.76e-08 | 61 |
electrically active cell | 1.76e-08 | 61 |
skin fibroblast | 2.71e-08 | 23 |