FFCP PHASE1:Hg19::chr13:111837279..111837297,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8874 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15607 | |||
|TSSclassifier=strong | |||
|UniProt=C9JDI6 | |||
|association_with_transcript=0bp_to_ENST00000467053_5end | |||
|cluster_id=chr13:111837279..111837297,+ | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_11_at_ARHGEF7_5end | |||
|id=chr13:111837279..111837297,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.41e-33!53;CL:0000051!1.41e-33!53;CL:0000838!2.08e-31!52;CL:0000945!4.10e-30!24;CL:0000826!4.10e-30!24;CL:0000738!6.90e-20!140;CL:0002087!3.24e-17!119;CL:0000037!1.04e-16!172;CL:0000566!1.04e-16!172;CL:0000988!2.81e-15!182;CL:0002031!2.30e-11!124;CL:0002032!3.83e-11!165;CL:0000837!3.83e-11!165;CL:0000784!1.15e-10!3;CL:0000236!1.24e-10!14;CL:0000842!3.49e-10!3;CL:0000624!1.64e-08!6;CL:0000224!9.87e-08!4;CL:0000785!1.89e-07!2;CL:0000955!1.89e-07!2;CL:0000818!1.89e-07!2;CL:0000954!1.89e-07!2;CL:0000816!1.89e-07!2;CL:0000815!2.08e-07!2;CL:0000792!2.08e-07!2;CL:0002677!2.08e-07!2;CL:0000084!8.87e-07!25;CL:0000827!8.87e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000784;1.15e-19;3!CL:0000815;2.40e-08;2!CL:0000792;2.40e-08;2!CL:0002677;2.40e-08;2!CL:0000542;4.66e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,1.15e-19,3;CL:0000542,2.55e-09,53;CL:0000051,2.55e-09,53;CL:0000815,2.67e-08,2;CL:0000792,2.67e-08,2;CL:0002677,2.67e-08,2;CL:0000738,1.88e-07,136;CL:0000838,8.60e-07,52 | |||
|ontology_enrichment_development_v019=UBERON:0006965;1.67e-08;2!CL:0000051;4.66e-07;53 | |||
|ontology_enrichment_disease=DOID:0060058!3.12e-14!10;DOID:2531!1.87e-07!51;DOID:0060083!1.87e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:12603;2.21e-15;1 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,3.66e-15,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!3.43e-11!7;UBERON:0002106!2.12e-09!3;UBERON:0004854!2.12e-09!3;UBERON:0009034!2.12e-09!3;UBERON:0002095!2.12e-09!3;UBERON:0004782!2.12e-09!3;UBERON:0003281!2.12e-09!3;UBERON:0009664!2.12e-09!3;UBERON:0002296!2.12e-09!3;UBERON:0005602!2.12e-09!3;UBERON:0001179!2.12e-09!3;UBERON:0006293!2.12e-09!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.49e-30;2!UBERON:0005058;4.49e-30;2!UBERON:0009113;4.49e-30;2!UBERON:0004177;1.19e-12;5!UBERON:0005057;1.19e-12;5!UBERON:0000341;2.40e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.44e-15,4;UBERON:0005058,1.44e-15,4;UBERON:0009113,1.44e-15,4;UBERON:0003295,1.44e-15,4;UBERON:0005562,1.44e-15,4;UBERON:0000974,1.41e-13,10;UBERON:0003351,1.07e-10,6;UBERON:0004177,2.69e-09,7;UBERON:0005057,2.69e-09,7;UBERON:0000341,2.48e-08,2;UBERON:0003408,9.22e-07,10;UBERON:0001042,9.22e-07,10;UBERON:0009145,9.22e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687720651731561,0.164201178899891,0.472264687882075,0.393364276848904,0,0.309632246632152,0,0,0,0.309868802321207,0.853015394924529,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,0,0.661044872784862,1.90810750907073,0.569212969109448,0,0.382273228125229,0,0.560508562981536,0,0.196709770113833,0,0.411202997999018,0,1.30368906653436,0.473447805734733,0,0,0.294605907474837,0,0,0,0,0.164437904603676,0,0.289803085735052,0.444859689486181,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,1.90792499444274,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.94633578946371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11481905075431,0,1.4939787103167,0.318852545457645,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0.291604613383254,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,3.06579894587209,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0.691403925334676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,2.11347980993343,0.154348316215889,0.437119121007915,0,0,0,0,0,0,0,0.0939839179798536,0.515663103788617,0.0999411559249289,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42838658878244,19.6996174999819,32.0926272909585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01273793591026,0.641136984606466 | |||
|short_description=p11@ARHGEF7 | |||
}} |
Latest revision as of 14:01, 16 September 2015
Short description: | p11@ARHGEF7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_ARHGEF7_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000467053_5end |
EntrezGene: | ARHGEF7 |
HGNC: | 15607 |
UniProt: | C9JDI6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 1.15e-19 | 3 |
lymphocyte | 2.55e-09 | 53 |
common lymphoid progenitor | 2.55e-09 | 53 |
regulatory T cell | 2.67e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.67e-08 | 2 |
naive regulatory T cell | 2.67e-08 | 2 |
leukocyte | 1.88e-07 | 136 |
lymphoid lineage restricted progenitor cell | 8.60e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.44e-15 | 4 |
hemolymphoid system gland | 1.44e-15 | 4 |
thymic region | 1.44e-15 | 4 |
pharyngeal gland | 1.44e-15 | 4 |
thymus primordium | 1.44e-15 | 4 |
neck | 1.41e-13 | 10 |
pharyngeal epithelium | 1.07e-10 | 6 |
hemopoietic organ | 2.69e-09 | 7 |
immune organ | 2.69e-09 | 7 |
throat | 2.48e-08 | 2 |
gland of gut | 9.22e-07 | 10 |
chordate pharynx | 9.22e-07 | 10 |
pharyngeal region of foregut | 9.22e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 3.66e-15 | 1 |