FFCP PHASE1:Hg19::chr13:28195482..28195491,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=222484 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=20421 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-238bp_to_uc001urm.1_5end | |||
|cluster_id=chr13:28195482..28195491,- | |||
|coexpression_cluster_id=C123 | |||
|description=CAGE_peak_4_at_LNX2_5end | |||
|id=chr13:28195482..28195491,- | |||
|ontology_enrichment_celltype=CL:0000838!8.10e-14!52;CL:0000542!2.39e-13!53;CL:0000051!2.39e-13!53;CL:0000738!1.29e-10!140;CL:0000791!2.27e-10!18;CL:0000789!2.27e-10!18;CL:0002420!2.27e-10!18;CL:0002419!2.27e-10!18;CL:0000790!2.27e-10!18;CL:0000624!2.86e-08!6;CL:0000037!8.75e-08!172;CL:0000566!8.75e-08!172;CL:0002031!9.02e-08!124;CL:0002087!4.74e-07!119;CL:0002032!9.33e-07!165;CL:0000837!9.33e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000624;1.44e-25;6!CL:0000791;4.31e-18;18!CL:0000789;4.31e-18;18!CL:0002419;4.31e-18;18!CL:0000623;2.85e-14;3!CL:0000542;6.85e-14;53!CL:0000898;2.62e-13;3!CL:0000084;1.51e-12;25!CL:0000236;3.97e-11;13!CL:0000815;2.47e-09;2!CL:0000792;2.47e-09;2!CL:0002677;2.47e-09;2!CL:0000094;2.32e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.87e-25,6;CL:0000838,1.26e-22,52;CL:0000542,4.08e-22,53;CL:0000051,4.08e-22,53;CL:0000791,5.15e-18,18;CL:0000789,5.15e-18,18;CL:0002420,5.15e-18,18;CL:0002419,5.15e-18,18;CL:0000790,5.15e-18,18;CL:0000738,1.65e-17,136;CL:0000623,2.62e-14,3;CL:0000825,2.62e-14,3;CL:0002087,9.36e-14,115;CL:0000898,3.38e-13,3;CL:0000037,6.14e-13,168;CL:0000084,1.71e-12,25;CL:0000827,1.71e-12,25;CL:0000988,5.92e-12,177;CL:0002031,8.40e-12,120;CL:0002032,1.69e-11,161;CL:0000837,1.69e-11,161;CL:0000236,2.50e-10,14;CL:0000815,2.99e-09,2;CL:0000792,2.99e-09,2;CL:0002677,2.99e-09,2;CL:0000094,2.10e-08,8 | |||
|ontology_enrichment_development_v019=CL:0000790;4.31e-18;18!CL:0000051;6.85e-14;53 | |||
|ontology_enrichment_disease=DOID:305!2.23e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0,2.36018566109342,1.15148819429164,0.464448369948228,0,0,0.369754010166788,0.154934401160603,0.142169232487422,0,1.10799081706375,2.00544447470142,1.51907609501096,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0,0,0.224723484445085,0,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,1.70692089026603,1.20118796110804,0.574752439954483,1.32208974556972,0,8.53819453664173,5.87237189370939,5.3518251937532,0,1.68152568894461,0,4.72103448273199,7.07419372948497,5.55124047298675,0.167186495390678,4.88883399950386,3.78758244587787,3.89653456815823,0.111410456885174,1.17842362989935,1.99380505125259,0.812411591295047,0.384273959177026,0.260118695119756,0,0,0.289803085735052,2.22429844743091,0.802622484269139,1.04535523804977,0.226618685395132,3.44898444241729,3.77990190030893,2.02415753615602,0.318565414324097,0,0,0.451725357233318,0.383959833463255,0,0.236777252044017,0,7.05623601286563,6.15112450302067,4.48955652036677,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.286804595389004,0.487894824518382,0,0,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,1.26755034821831,0,0,0,0.860919069801795,0,0.109750285408626,1.1240175325762,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0.16798212819886,0.141775097242386,0.53735113621709,0,0.383382679165211,0,0,0.621984346622316,0.288239906833923,0.75745460055828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0.224170287987055,8.86638420908672,6.46882724578552,7.18721003166591,0,0,0,0,0,0.749007023947182,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,1.2942852049117,0.533637789017222,1.81876542867756,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,1.81289174387433,0,0.736647911487171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0.261435451024901,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.330569830721956,0.576570202095319,0.510450849978337,1.0115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423347165447766,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0.276283915531148,0.251932747854276,0,0.615424027305347,0,0.179736702294654,0.895105873378046,0,0,0,0,0,0,0,1.30213880542617,1.39935999993913,0,0.1137934482855,0.508507300585533,0.236387681767936,0,0,0,0,0.241192877250816,0,0.221158519862449,0,0,0.21787692703798,0.41827123283581,0.153900517007594,0,0.23056390438806,0.269272933229316,0.108647371922008,0.957003479195758,0,0,0,0.156980256395025,0,0,0,0.167821586975843,0,0,0.210998064528027,0.163232808159148,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25485129121739,0.311064574191741,0,0,0,0,0,0,0,0.489961987071888,0.261177619741208,0.34945333648406,0,0.19351266257817,0.0730893170861856,0,0,0.176512253383001,0,0,0,0,0.586654148204409,0,0,0,0.432271251462318,0,0,0.432164393964449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,0.315132729228895,0.0824158583811665,0.202210631562555,0.0984274815147488,0.169346664131569,0,0,0.321506296930038,0.825236619583403,0.415440338029185,0.449947783103001,10.0594254092533,0,0.335434687599266,0.157611414598396,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0.640724475406168,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0.122026264901963,0,0,0,0,0,0.124980407962107,0.151649117541648,0,0,0,0.144921028610825,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0.245772908753719,0.845248493434508,0,0,0,0,0,0.419638523158333,1.24415452006595,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.235939446695481,0,0.231051332300676,0,0,0,0,0,0.781514011233092,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0.227662191351298,0.177404740325278,0.115233987555779,0,0,0.0657727735628491,0,0.111231401892069,0.156986185701028,0,1.40136081656895,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0.118332000730565,0,0,0.68732060563215,0,0,0.111855431797792,0.98150233615243,0.243835849964539,0,0.102662806856247,0,0,0.467878926924211,0,0,0.5647304101948,0.109940516745429,0.150962843566674,0.694567422971502,0,0.470317296361523,0.245148321753905,0.707029641304878,0,0,0,0,0,0.128915775947154,0,1.2498775702396,1.05868461514708,0.320965466756673,0.730336388246517,0.458729283404541,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0.203977659483963,0,0.459474497674225,0,0,0,0,0.10343299586189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| |||
|short_description=p4@LNX2 | |||
}} |
Latest revision as of 23:20, 16 September 2015
Short description: | p4@LNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LNX2_5end |
Coexpression cluster: | C123_CD19_Natural_CD8_CD4_CD14_Peripheral_Basophils |
Association with transcript: | -238bp_to_uc001urm.1_5end |
EntrezGene: | LNX2 |
HGNC: | 20421 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.87e-25 | 6 |
lymphoid lineage restricted progenitor cell | 1.26e-22 | 52 |
lymphocyte | 4.08e-22 | 53 |
common lymphoid progenitor | 4.08e-22 | 53 |
mature alpha-beta T cell | 5.15e-18 | 18 |
alpha-beta T cell | 5.15e-18 | 18 |
immature T cell | 5.15e-18 | 18 |
mature T cell | 5.15e-18 | 18 |
immature alpha-beta T cell | 5.15e-18 | 18 |
leukocyte | 1.65e-17 | 136 |
natural killer cell | 2.62e-14 | 3 |
pro-NK cell | 2.62e-14 | 3 |
nongranular leukocyte | 9.36e-14 | 115 |
naive T cell | 3.38e-13 | 3 |
hematopoietic stem cell | 6.14e-13 | 168 |
T cell | 1.71e-12 | 25 |
pro-T cell | 1.71e-12 | 25 |
hematopoietic cell | 5.92e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 8.40e-12 | 120 |
hematopoietic oligopotent progenitor cell | 1.69e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.69e-11 | 161 |
B cell | 2.50e-10 | 14 |
regulatory T cell | 2.99e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.99e-09 | 2 |
naive regulatory T cell | 2.99e-09 | 2 |
granulocyte | 2.10e-08 | 8 |