FFCP PHASE1:Hg19::chr15:99866695..99866740,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=123355 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28355 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000558890_5end | |||
|cluster_id=chr15:99866695..99866740,+ | |||
|coexpression_cluster_id=C234 | |||
|description=CAGE_peak_5_at_LRRC28_5end | |||
|id=chr15:99866695..99866740,+ | |||
|ontology_enrichment_celltype=CL:0000223!4.95e-17!59;CL:0002076!3.72e-16!43;CL:0002251!1.18e-11!21;CL:0002623!5.62e-10!3;CL:0000066!6.66e-10!254;CL:0002231!1.52e-08!3;CL:0002327!2.80e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002615;1.71e-14;3!CL:0002623;1.71e-14;3!CL:0000622;3.10e-09;5!CL:0002251;5.59e-09;20!CL:0000154;6.55e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,1.40e-14,3;CL:0002615,2.09e-14,3;CL:0000622,2.74e-09,5;CL:0002251,5.26e-09,20;CL:0000154,5.92e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.81e-14!14;DOID:305!1.02e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.18e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.24e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.47e-14!169;UBERON:0000925!2.47e-14!169;UBERON:0006595!2.47e-14!169;UBERON:0003729!1.74e-13!5;UBERON:0002365!3.01e-13!31;UBERON:0002330!3.01e-13!31;UBERON:0000166!7.13e-12!21;UBERON:0003343!1.82e-11!4;UBERON:0004785!1.82e-11!4;UBERON:0001007!2.41e-11!155;UBERON:0001555!2.41e-11!155;UBERON:0007026!2.41e-11!155;UBERON:0000161!1.06e-10!35;UBERON:0001004!2.85e-10!72;UBERON:0000165!5.19e-10!28;UBERON:0000930!5.19e-10!28;UBERON:0001041!6.57e-10!98;UBERON:0002530!8.07e-10!59;UBERON:0000077!3.57e-09!130;UBERON:0002417!6.93e-09!61;UBERON:0000916!6.93e-09!61;UBERON:0005172!7.09e-09!55;UBERON:0005173!7.09e-09!55;UBERON:0004921!2.49e-08!129;UBERON:0004185!2.49e-08!129;UBERON:0001044!2.67e-08!6;UBERON:0003293!2.67e-08!6;UBERON:0003294!2.67e-08!6;UBERON:0010047!2.67e-08!6;UBERON:0000167!2.67e-08!6;UBERON:0002106!8.22e-08!3;UBERON:0004854!8.22e-08!3;UBERON:0009034!8.22e-08!3;UBERON:0002095!8.22e-08!3;UBERON:0004782!8.22e-08!3;UBERON:0003281!8.22e-08!3;UBERON:0009664!8.22e-08!3;UBERON:0002296!8.22e-08!3;UBERON:0005602!8.22e-08!3;UBERON:0001179!8.22e-08!3;UBERON:0006293!8.22e-08!3;UBERON:0001911!2.80e-07!4;UBERON:0005333!2.80e-07!4;UBERON:0008425!2.80e-07!4;UBERON:0005311!2.80e-07!4;UBERON:0005057!5.07e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;2.53e-11;4!UBERON:0004785;2.53e-11;4!UBERON:0000161;2.12e-09;19!UBERON:0000166;2.12e-09;19!UBERON:0000974;5.54e-08;6!UBERON:0001044;6.55e-08;6!UBERON:0003688;6.55e-08;6!UBERON:0003293;6.55e-08;6!UBERON:0003294;6.55e-08;6!UBERON:0010047;6.55e-08;6!UBERON:0003408;6.55e-08;6!UBERON:0000167;6.55e-08;6!UBERON:0002358;6.55e-08;6!UBERON:0003684;6.55e-08;6!UBERON:0001178;6.55e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,2.53e-11,4;UBERON:0004785,2.53e-11,4;UBERON:0000166,2.82e-08,22;UBERON:0001044,5.92e-08,6;UBERON:0003293,5.92e-08,6;UBERON:0003294,5.92e-08,6;UBERON:0010047,5.92e-08,6;UBERON:0000167,5.92e-08,6;UBERON:0003688,7.25e-08,6;UBERON:0002358,7.25e-08,6;UBERON:0003684,7.25e-08,6;UBERON:0001178,7.25e-08,6 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0,0,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.806026704325635,0.581267877027924,0.383382679165211,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.601519410909855,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661139661443912,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.847294206991012,0,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557216921387392,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0.709048640765013,0.659326867049332,0.808842526250219,0.196854963029498,0,0,0,0,0,0,0,0,0,0.670869375198532,0.315222829196793,0.314727528809989,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,1.32506888912221,0,0,0.513260513652988,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,8.63699922809025,0.11796972334774,0.550285795565037,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431855182437243,0.47775168788705,0,0,0,0,0,0.828864656652147,0.51215543128185,1.38251932362818,0.430227358820278,0,0,0,0,0.31020638566432,0,0,0,0,0,0.102662806856247,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0.0999411559249289,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@LRRC28 | |||
}} |
Latest revision as of 03:46, 20 September 2015
Short description: | p5@LRRC28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LRRC28_5end |
Coexpression cluster: | C234_oral_epidermoid_malignant_cervical_ductal_lung_keratoacanthoma |
Association with transcript: | 0bp_to_ENST00000558890_5end |
EntrezGene: | LRRC28 |
HGNC: | 28355 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 1.40e-14 | 3 |
adipocyte of omentum tissue | 2.09e-14 | 3 |
acinar cell | 2.74e-09 | 5 |
epithelial cell of alimentary canal | 5.26e-09 | 20 |
protein secreting cell | 5.92e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 2.53e-11 | 4 |
respiratory system mucosa | 2.53e-11 | 4 |
oral opening | 2.82e-08 | 22 |
saliva-secreting gland | 5.92e-08 | 6 |
gland of oral region | 5.92e-08 | 6 |
gland of foregut | 5.92e-08 | 6 |
oral gland | 5.92e-08 | 6 |
oral cavity | 5.92e-08 | 6 |
omentum | 7.25e-08 | 6 |
peritoneum | 7.25e-08 | 6 |
abdominal cavity | 7.25e-08 | 6 |
visceral peritoneum | 7.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.24e-12 | 14 |