FFCP PHASE1:Hg19::chr17:36104873..36104903,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6928 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11630 | |||
|TSSclassifier=strong | |||
|UniProt=E0YMJ9,E0YMJ8 | |||
|association_with_transcript=105bp_to_ENST00000427275,ENST00000544593,ENST00000560016_5end | |||
|cluster_id=chr17:36104873..36104903,- | |||
|description=CAGE_peak_3_at_HNF1B_5end | |||
|id=chr17:36104873..36104903,- | |||
|ontology_enrichment_celltype=CL:1000497!2.63e-22!18;CL:0002518!2.63e-22!18;CL:1000449!2.08e-18!16;CL:1000507!1.10e-17!12;CL:1000494!1.10e-17!12;CL:0000066!1.81e-16!254;CL:0002681!8.54e-13!13;CL:0002584!8.54e-13!13;CL:0000244!8.24e-09!4;CL:0000731!8.24e-09!4;CL:0000239!1.78e-07!3;CL:1000615!1.78e-07!3;CL:0002306!1.78e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:1000497;8.99e-61;17!CL:0002518;8.99e-61;17!CL:1000507;2.09e-53;10!CL:1000494;2.09e-53;10!CL:1000449;2.53e-50;15!CL:0002681;3.86e-35;12!CL:0002584;3.86e-35;12!CL:0000239;1.22e-16;3!CL:1000615;1.22e-16;3!CL:0002306;1.22e-16;3!CL:1000746;6.72e-13;7!CL:1000612;6.72e-13;7!CL:0000650;1.91e-12;2!CL:1000500;1.91e-12;2!CL:1000618;1.91e-12;2!CL:1001318;1.91e-12;2!CL:0002173;1.91e-12;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,7.39e-61,17;CL:0002518,7.39e-61,17;CL:1000507,1.99e-53,10;CL:1000494,1.99e-53,10;CL:1000449,1.96e-50,15;CL:0002681,2.81e-35,12;CL:0002584,2.81e-35,12;CL:0000239,1.10e-16,3;CL:1000615,1.10e-16,3;CL:0002306,1.10e-16,3;CL:0000066,1.93e-13,253;CL:1000746,5.77e-13,7;CL:1000612,5.77e-13,7;CL:0000650,1.91e-12,2;CL:1000500,1.91e-12,2;CL:1000618,1.91e-12,2;CL:1001318,1.91e-12,2;CL:0002173,1.91e-12,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.04e-18!106;DOID:0050687!1.26e-11!143;DOID:299!1.88e-11!25 | |||
|ontology_enrichment_disease_v019=DOID:299;8.67e-13;25!DOID:4468;3.85e-12;2!DOID:4929;1.74e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:299,8.06e-13,25;DOID:4468,2.53e-12,2;DOID:4929,2.28e-11,2;DOID:305,1.21e-09,106;DOID:0050687,2.43e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0006554!3.83e-33!44;UBERON:0001008!3.36e-32!45;UBERON:0000058!2.87e-26!26;UBERON:0002113!4.76e-25!27;UBERON:0003918!4.76e-25!27;UBERON:0005095!4.76e-25!27;UBERON:0007687!4.76e-25!27;UBERON:0005172!1.52e-22!55;UBERON:0005173!1.52e-22!55;UBERON:0000080!1.25e-21!18;UBERON:0002120!1.25e-21!18;UBERON:0004875!1.25e-21!18;UBERON:0005721!1.25e-21!18;UBERON:0005754!1.25e-21!18;UBERON:0007297!1.25e-21!18;UBERON:0000489!3.26e-20!32;UBERON:0006555!4.51e-20!17;UBERON:0005103!4.51e-20!17;UBERON:0000083!4.51e-20!17;UBERON:0009201!4.51e-20!17;UBERON:0004819!4.51e-20!17;UBERON:0006553!4.51e-20!17;UBERON:0003074!4.51e-20!17;UBERON:0003060!4.51e-20!17;UBERON:0002417!1.71e-19!61;UBERON:0000916!1.71e-19!61;UBERON:0004876!4.72e-19!20;UBERON:0004211!2.08e-18!16;UBERON:0001285!2.08e-18!16;UBERON:0007684!2.08e-18!16;UBERON:0003220!2.08e-18!16;UBERON:0004208!2.08e-18!16;UBERON:0003064!5.34e-18!37;UBERON:0003887!5.99e-18!21;UBERON:0009773!1.10e-17!12;UBERON:0001231!1.10e-17!12;UBERON:0004810!1.10e-17!12;UBERON:0004119!3.34e-15!169;UBERON:0000925!3.34e-15!169;UBERON:0006595!3.34e-15!169;UBERON:0005177!4.49e-15!107;UBERON:0004921!5.01e-15!129;UBERON:0004185!5.01e-15!129;UBERON:0003104!5.50e-15!238;UBERON:0009142!5.50e-15!238;UBERON:0000466!5.28e-14!126;UBERON:0001737!2.59e-13!9;UBERON:0005911!3.10e-13!82;UBERON:0001225!8.54e-13!13;UBERON:0008987!8.54e-13!13;UBERON:0000077!2.70e-12!130;UBERON:0001007!2.93e-12!155;UBERON:0001555!2.93e-12!155;UBERON:0007026!2.93e-12!155;UBERON:0009569!1.06e-11!113;UBERON:0003886!1.10e-11!63;UBERON:0001851!5.40e-10!16;UBERON:0002553!6.83e-10!70;UBERON:0003929!2.52e-09!54;UBERON:0000353!2.78e-09!17;UBERON:0001041!2.93e-09!98;UBERON:0009497!7.02e-09!25;UBERON:0000015!7.02e-09!25;UBERON:0002423!7.02e-09!25;UBERON:0006235!7.02e-09!25;UBERON:0004161!7.02e-09!25;UBERON:0000464!7.69e-09!104;UBERON:0003101!2.13e-08!22;UBERON:0000079!2.13e-08!22;UBERON:0002100!2.48e-08!216;UBERON:0000481!2.53e-08!347;UBERON:0005256!1.76e-07!143;UBERON:0007499!1.78e-07!25;UBERON:0006853!1.78e-07!3;UBERON:0007685!1.78e-07!3;UBERON:0004134!1.78e-07!3;UBERON:0002294!2.82e-07!7;UBERON:0001173!2.82e-07!7;UBERON:0004912!2.82e-07!7;UBERON:0008835!3.11e-07!22;UBERON:0003894!3.11e-07!22;UBERON:0009856!4.26e-07!26;UBERON:0000365!5.05e-07!5;UBERON:0003937!5.63e-07!12;UBERON:0005399!5.63e-07!12;UBERON:0009854!7.91e-07!23;UBERON:0008947!8.14e-07!38;UBERON:0003258!8.14e-07!38;UBERON:0006947!9.50e-07!3;UBERON:0004054!9.50e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.09e-53;10!UBERON:0009773;2.09e-53;10!UBERON:0001231;2.09e-53;10!UBERON:0004810;2.09e-53;10!UBERON:0006555;2.53e-50;15!UBERON:0004819;2.53e-50;15!UBERON:0001285;2.53e-50;15!UBERON:0007684;2.53e-50;15!UBERON:0002113;2.12e-48;24!UBERON:0011143;2.12e-48;24!UBERON:0006554;1.15e-43;30!UBERON:0001008;1.15e-43;30!UBERON:0000489;1.68e-39;29!UBERON:0001225;3.86e-35;12!UBERON:0008987;3.86e-35;12!UBERON:0001851;8.08e-28;15!UBERON:0000353;8.08e-28;15!UBERON:0006853;1.22e-16;3!UBERON:0007685;1.22e-16;3!UBERON:0004134;1.22e-16;3!UBERON:0005172;4.34e-15;52!UBERON:0005173;4.34e-15;52!UBERON:0002417;2.67e-14;58!UBERON:0000916;2.67e-14;58!UBERON:0000074;6.72e-13;7!UBERON:0001229;6.72e-13;7!UBERON:0003567;1.91e-12;2!UBERON:0003838;1.91e-12;2!UBERON:0003586;1.91e-12;2!UBERON:0005169;1.91e-12;2!UBERON:0002321;1.91e-12;2!UBERON:0005215;1.91e-12;2!UBERON:0002303;1.91e-12;2!UBERON:0002319;1.91e-12;2!UBERON:0002394;2.08e-12;4!UBERON:0003928;2.08e-12;4!UBERON:0003103;1.95e-08;61!UBERON:0002294;2.70e-07;7!UBERON:0001173;2.70e-07;7!UBERON:0005177;3.28e-07;99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.99e-53,10;UBERON:0004211,1.96e-50,15;UBERON:0009773,1.96e-50,15;UBERON:0001231,1.96e-50,15;UBERON:0001285,1.96e-50,15;UBERON:0007684,1.96e-50,15;UBERON:0004208,1.96e-50,15;UBERON:0006555,3.92e-47,16;UBERON:0004819,3.92e-47,16;UBERON:0002113,1.96e-44,26;UBERON:0003918,1.96e-44,26;UBERON:0011143,1.96e-44,26;UBERON:0005095,1.96e-44,26;UBERON:0007687,1.96e-44,26;UBERON:0000489,9.55e-37,31;UBERON:0001225,2.81e-35,12;UBERON:0008987,2.81e-35,12;UBERON:0006554,3.57e-30,47;UBERON:0001008,1.81e-29,48;UBERON:0001851,6.27e-28,15;UBERON:0000353,6.27e-28,15;UBERON:0005172,1.57e-22,54;UBERON:0005173,1.57e-22,54;UBERON:0002417,6.25e-20,60;UBERON:0000916,6.25e-20,60;UBERON:0006853,1.10e-16,3;UBERON:0007685,1.10e-16,3;UBERON:0004134,1.10e-16,3;UBERON:0005177,2.33e-15,101;UBERON:0003103,5.36e-15,68;UBERON:0000058,4.17e-13,19;UBERON:0010532,5.77e-13,7;UBERON:0000074,5.77e-13,7;UBERON:0001229,5.77e-13,7;UBERON:0001230,5.77e-13,7;UBERON:0003220,5.77e-13,7;UBERON:0005749,5.77e-13,7;UBERON:0004199,5.77e-13,7;UBERON:0004209,5.77e-13,7;UBERON:0004198,5.77e-13,7;UBERON:0003567,1.91e-12,2;UBERON:0003838,1.91e-12,2;UBERON:0003586,1.91e-12,2;UBERON:0005169,1.91e-12,2;UBERON:0002321,1.91e-12,2;UBERON:0005215,1.91e-12,2;UBERON:0002303,1.91e-12,2;UBERON:0002319,1.91e-12,2;UBERON:0005103,2.33e-11,8;UBERON:0000083,2.33e-11,8;UBERON:0009201,2.33e-11,8;UBERON:0006553,2.33e-11,8;UBERON:0003074,2.33e-11,8;UBERON:0003060,2.33e-11,8;UBERON:0002100,1.58e-10,199;UBERON:0009569,1.75e-10,112;UBERON:0003104,2.25e-10,160;UBERON:0009142,2.25e-10,160;UBERON:0000080,4.16e-10,9;UBERON:0002120,4.16e-10,9;UBERON:0004875,4.16e-10,9;UBERON:0005721,4.16e-10,9;UBERON:0005754,4.16e-10,9;UBERON:0007297,4.16e-10,9;UBERON:0003914,1.91e-08,117;UBERON:0002394,2.22e-08,6;UBERON:0003928,2.22e-08,6;UBERON:0004876,2.78e-08,11;UBERON:0003887,1.35e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.09340350391728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90370941842215,3.85872770414745,2.51874500203774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580969714347592,0,0.504641701751257,0,0,1.28648187638577,0,0,0,0.473227200159376,0.842923450390509,1.20505514941741,0.772057809126758,0.871517776369625,1.18635309555548,0.134831308160164,0,0.38474715694639,0,0,0.4115740113314,0,0,0,0,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0.601519410909855,0.184161977871793,0,0,0,1.35359883872224,2.38747545023686,3.13739907670742,4.38417673959782,4.01096189792928,0,0,1.94324324491925,0,3.25135725052623,4.01351819083883,1.27438136522519,2.49322802678617,1.56712328305525,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0.43050537267123,5.05414427002877,0.886860307073351,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0.111443384277478,0.568272293612826,0,0,0,0,0,0,0,0,0,0,0,0,0.738508832766417,0,1.16828856491525,1.43216939740487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.86191871017714,1.79556088975062,0.282706142867882,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0,0,0.150323419414493,0,0,0,0,0,2.84609546029793,0,0,0,0,0.698906672968121,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0.640358984218058,0,2.16135625731159,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0.412079291905832,0.876246070104404,0.688992370603241,0.0846733320657845,0,0,0.160753148465019,0.137539436597234,0.415440338029185,0,0,0,0,0.551639951094387,1.25891011523995,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0,3.59282359557092,0,0.427149650270779,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.38107189034688,0,0,0,0.194860308839388,0,0,0,0,0.422624246717254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0,1.56302802246618,0,0,1.33070477595341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0,0,1.65471377237555,0.111231401892069,0.313972371402056,0,0.280272163313789,0,3.23891386827932,8.5995303819669,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0.31020638566432,0,1.34226518157351,0.687051635306701,5.9739783241312,0,0,0,0,0,0,0,0,0.109940516745429,0,0.308696632431779,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0,0,0,0.250707539292375,0.454672189309436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25755282949222,0,0,0,0,0,0 | |||
|short_description=p3@HNF1B | |||
}} |
Latest revision as of 18:29, 19 September 2015
Short description: | p3@HNF1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HNF1B_5end |
Coexpression cluster: | NA |
Association with transcript: | 105bp_to_ENST00000427275, ENST00000544593, ENST00000560016_5end |
EntrezGene: | HNF1B |
HGNC: | 11630 |
UniProt: | E0YMJ9E0YMJ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 7.39e-61 | 17 |
kidney epithelial cell | 7.39e-61 | 17 |
kidney tubule cell | 1.99e-53 | 10 |
nephron tubule epithelial cell | 1.99e-53 | 10 |
epithelial cell of nephron | 1.96e-50 | 15 |
kidney cortical cell | 2.81e-35 | 12 |
renal cortical epithelial cell | 2.81e-35 | 12 |
brush border epithelial cell | 1.10e-16 | 3 |
kidney cortex tubule cell | 1.10e-16 | 3 |
epithelial cell of proximal tubule | 1.10e-16 | 3 |
epithelial cell | 1.93e-13 | 253 |
glomerular cell | 5.77e-13 | 7 |
kidney corpuscule cell | 5.77e-13 | 7 |
mesangial cell | 1.91e-12 | 2 |
kidney interstitial cell | 1.91e-12 | 2 |
juxtaglomerular complex cell | 1.91e-12 | 2 |
renal interstitial pericyte | 1.91e-12 | 2 |
extraglomerular mesangial cell | 1.91e-12 | 2 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 8.06e-13 | 25 |
clear cell adenocarcinoma | 2.53e-12 | 2 |
tubular adenocarcinoma | 2.28e-11 | 2 |
carcinoma | 1.21e-09 | 106 |
cell type cancer | 2.43e-07 | 143 |