FFCP PHASE1:Hg19::chr17:41623692..41623715,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2118 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3493 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z5J3 | |||
|association_with_transcript=-1bp_to_ENST00000545954_5end | |||
|cluster_id=chr17:41623692..41623715,- | |||
|coexpression_cluster_id=C3635 | |||
|description=CAGE_peak_1_at_ETV4_5end | |||
|id=chr17:41623692..41623715,- | |||
|ontology_enrichment_celltype=CL:0000066!1.79e-38!254;CL:0002321!1.65e-25!248;CL:0000220!1.01e-24!246;CL:0000548!2.06e-11!679;CL:0000004!2.06e-11!679;CL:0000255!2.06e-11!679;CL:0000012!1.21e-10!682;CL:0000223!1.34e-09!59;CL:0000076!4.72e-09!62;CL:0000221!6.51e-08!71;CL:0002076!9.31e-08!43;CL:0000222!1.38e-07!119;CL:0000055!7.03e-07!180;CL:0002078!8.00e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:1000449;7.61e-07;15!CL:0000071;9.36e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.35e-39,253;CL:0002321,4.04e-25,250;CL:0000223,1.96e-10,58;CL:0000076,8.14e-09,63;CL:0002076,3.10e-08,42;CL:0002078,2.18e-07,45;CL:0000221,2.23e-07,72;CL:0000222,2.93e-07,121;CL:0000115,5.92e-07,36;CL:0000071,8.87e-07,18;CL:0002546,8.87e-07,18;CL:1000449,8.94e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002546;9.36e-07;18 | |||
|ontology_enrichment_disease=DOID:162!3.24e-16!235;DOID:14566!2.76e-15!239;DOID:305!7.74e-14!106;DOID:0050687!5.67e-13!143;DOID:0050686!4.20e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.88e-16,235;DOID:14566,1.21e-15,239;DOID:305,1.03e-13,106;DOID:0050687,5.04e-13,143;DOID:0050686,3.39e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000119!2.06e-13!312;UBERON:0000483!1.50e-12!309;UBERON:0003104!5.93e-12!238;UBERON:0009142!5.93e-12!238;UBERON:0003914!2.27e-11!118;UBERON:0000481!3.55e-11!347;UBERON:0004119!1.83e-10!169;UBERON:0000925!1.83e-10!169;UBERON:0006595!1.83e-10!169;UBERON:0000490!2.04e-09!138;UBERON:0002100!2.35e-09!216;UBERON:0001048!2.42e-09!168;UBERON:0000466!4.69e-09!126;UBERON:0001007!7.59e-09!155;UBERON:0001555!7.59e-09!155;UBERON:0007026!7.59e-09!155;UBERON:0005256!1.75e-08!143;UBERON:0005177!1.96e-08!107;UBERON:0000077!3.19e-08!130;UBERON:0000475!3.36e-08!365;UBERON:0000477!1.31e-07!286;UBERON:0000487!2.04e-07!22;UBERON:0000464!2.24e-07!104;UBERON:0004111!3.35e-07!241;UBERON:0002049!5.35e-07!79;UBERON:0007798!5.35e-07!79;UBERON:0005911!6.68e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;9.10e-08;33!UBERON:0000487;1.45e-07;22!UBERON:0006555;7.61e-07;15!UBERON:0004819;7.61e-07;15!UBERON:0001285;7.61e-07;15!UBERON:0007684;7.61e-07;15!UBERON:0004638;9.36e-07;18!UBERON:0001986;9.36e-07;18!UBERON:0004852;9.36e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,2.12e-11,117;UBERON:0000119,6.50e-10,309;UBERON:0000490,9.01e-10,148;UBERON:0005177,2.95e-09,101;UBERON:0000483,3.62e-09,306;UBERON:0002100,1.98e-08,199;UBERON:0004119,8.35e-08,160;UBERON:0000925,8.35e-08,160;UBERON:0006595,8.35e-08,160;UBERON:0000487,1.26e-07,22;UBERON:0004638,8.87e-07,18;UBERON:0001986,8.87e-07,18;UBERON:0004852,8.87e-07,18;UBERON:0004211,8.94e-07,15;UBERON:0009773,8.94e-07,15;UBERON:0001231,8.94e-07,15;UBERON:0001285,8.94e-07,15;UBERON:0007684,8.94e-07,15;UBERON:0004208,8.94e-07,15 | |||
|phase1_expression=0.908391896352783,1.2846031433459,0.422863212287913,0,0,0,0,6.94891860769514,0.261185628199839,24.8191275866524,48.1482805900975,34.5137367965672,22.4201931494186,0.37129905888014,0.331397375727916,8.74022690387308,13.2592796165275,13.1455816269727,10.7345215733912,11.9427426334484,9.18003110599138,2.5076377718247,9.44578757532487,9.58120975510189,8.53689949244659,27.5852394750104,26.9289933395822,26.0532686148278,0,0,0.928896739896456,22.9855306119732,27.710944527599,20.3364705591733,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0.334231370655521,0,0,0,0.128091319725675,1.1705341280389,0,0.276350017785848,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,10.0605128955545,2.30152611318355,0.722878304769133,0.50133791063589,0.289693037921647,9.54343136461319,2.43317435151318,7.9409246417817,5.98669373148923,7.90513071238134,1.0478326039817,59.3801319916844,30.0335398655388,0,0,0.132957960518865,0,0,0,22.4601520324377,22.3660994727592,27.7712401286075,15.8286223738723,21.3944712467052,28.612276361767,24.0344211517332,7.23566925674121,2.13459757612026,5.35552980423472,6.0424397566372,16.7259863258073,2.4406205754817,10.6622293300302,14.5825550618717,14.6451554385891,16.3906442017104,17.4547794749149,41.3954921157885,47.4632829784064,27.6634633334915,0,0,13.9550096685611,0,4.30543739659571,0.662045904066094,1.14734648299525,3.90135220418193,2.24271040056923,13.8773694448616,5.92002116201184,5.60179863719579,7.81321898004191,12.4231046366229,11.3518070733699,6.91411109375999,17.1054645238672,5.61888138294577,14.8322673601557,8.51857479145266,15.1490503250457,21.3672286565934,20.2249161651238,5.10385428137233,20.636165308377,1.34323515528495,4.75201142912821,2.71993622206413,23.6641954103887,17.2468354035897,18.0119641930851,27.1507188122162,9.6972440419464,1.31693286264251,2.75839016219118,7.96261712204963,9.64173556860179,2.15267562826634,1.49490172172997,1.27159140695737,1.80054657650641,1.95799805553034,0.257640540045629,1.48893485065272,1.85653965465393,0.584622030967192,0.757301322732344,0.828449087780694,0.646584227275248,0.355009592516614,0.806016785821122,2.37384829234683,20.4856504353095,24.0016586119934,17.4950803187292,48.7894824518382,16.1686317352212,27.4217705172063,30.6836722845496,33.5586731664586,6.20461510428911,4.69348596989448,1.28648187638577,22.1015874163969,0.464367928031979,0,3.43089720115547,3.03452442140583,8.19437501603839,3.639701100169,5.22910665821775,9.96536600266606,3.37078270400411,4.31687223275761,14.2356448070164,5.90524363699719,47.6822030931716,2.8810180793198,7.3504355692771,0,0,1.18157981336281,0,33.0838899680975,9.60779737671743,26.2303182126615,49.4567714333526,47.7512618955246,19.3509850381327,4.23550796903422,12.4792174233549,21.649701303791,7.65140672835507,3.05262605013136,2.02113026865503,4.62985512576611,1.90254152234598,1.58040879591855,2.57545848628462,0,0.234004265139238,0.445893486866185,4.68669169933885,8.7350706663407,13.4686342380267,9.58276192920477,23.8319829581449,47.9228348956514,0.985326475791887,0.176096868026452,0.621984346622316,1.15295962733569,0.50496973370552,18.6683809218977,26.7391897890794,36.3374086351146,29.0823158238599,18.4061211938949,17.1195542971033,12.0047101704843,47.7678419311237,16.1305225468314,31.3154480455457,4.00742318849111,7.15312891703765,16.060752298564,3.19125739901845,3.12022310734098,13.8891982101557,14.1849132023278,17.8502859940787,1.57275793023962,0,4.93944202068461,11.7265026345745,1.06617584622764,25.3424599338697,2.1100756394171,2.61460037580088,5.39854152383108,0,0,0,2.39624855491583,0,18.5427976552934,3.4747513600219,4.52047909610843,5.55088986043676,10.0876629594175,0,0,0.128343036279748,35.8273420153673,28.6307678486768,8.50617694055465,21.7771144934653,14.0346525363696,0,0,0,0.49076596687656,1.50051156317903,2.71265023699736,0.623912584592421,0.535286966391485,0.315404830067869,1.7571212248907,0.902838299183157,4.5481500811197,4.1389228517002,6.64225598535437,4.05612170791747,3.64911180765948,4.89502893656851,5.83343820478455,0,0,0,8.48757200049526,8.32177197552485,18.4458078931105,0.496215615637554,0.767309866440312,0.280660094433074,0.640695746278505,0.511707249066704,1.60853921143608,4.45254199334973,13.2620336670284,9.23320971628261,7.47357119725663,20.2509227381612,6.74020195067764,31.665175793005,13.0329205697135,7.82688405955119,3.4444334449382,3.82391452814106,1.31124414959424,42.8639632262041,17.0974048371801,59.610582457441,55.5329053682391,16.0438475917171,18.1973414513435,22.112181685947,8.85255256018771,23.1340879035434,7.31555381368403,7.02365683396795,27.7815137619092,44.8781044821511,17.2383561136077,0,0,13.0789563809358,7.54433685109323,2.27764876265012,0.515205058238611,0.54941678891006,0.41254749960294,39.6243221217359,22.1020483652417,1.6068392984416,7.15363315361703,5.23765298189791,4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| |||
|short_description=p1@ETV4 | |||
}} |
Latest revision as of 18:34, 24 September 2015
Short description: | p1@ETV4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ETV4_5end |
Coexpression cluster: | C3635_testicular_hepatoblastoma_hepatocellular_lung_gastric_prostate_Trabecular |
Association with transcript: | -1bp_to_ENST00000545954_5end |
EntrezGene: | ETV4 |
HGNC: | 3493 |
UniProt: | B7Z5J3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.35e-39 | 253 |
embryonic cell | 4.04e-25 | 250 |
endodermal cell | 1.96e-10 | 58 |
squamous epithelial cell | 8.14e-09 | 63 |
endo-epithelial cell | 3.10e-08 | 42 |
meso-epithelial cell | 2.18e-07 | 45 |
ectodermal cell | 2.23e-07 | 72 |
mesodermal cell | 2.93e-07 | 121 |
endothelial cell | 5.92e-07 | 36 |
blood vessel endothelial cell | 8.87e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.87e-07 | 18 |
epithelial cell of nephron | 8.94e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 2.12e-11 | 117 |
cell layer | 6.50e-10 | 309 |
unilaminar epithelium | 9.01e-10 | 148 |
trunk region element | 2.95e-09 | 101 |
epithelium | 3.62e-09 | 306 |
trunk | 1.98e-08 | 199 |
endoderm-derived structure | 8.35e-08 | 160 |
endoderm | 8.35e-08 | 160 |
presumptive endoderm | 8.35e-08 | 160 |
simple squamous epithelium | 1.26e-07 | 22 |
blood vessel endothelium | 8.87e-07 | 18 |
endothelium | 8.87e-07 | 18 |
cardiovascular system endothelium | 8.87e-07 | 18 |
nephron epithelium | 8.94e-07 | 15 |
renal tubule | 8.94e-07 | 15 |
nephron tubule | 8.94e-07 | 15 |
nephron | 8.94e-07 | 15 |
uriniferous tubule | 8.94e-07 | 15 |
nephrogenic mesenchyme | 8.94e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.88e-16 | 235 |
disease of cellular proliferation | 1.21e-15 | 239 |
carcinoma | 1.03e-13 | 106 |
cell type cancer | 5.04e-13 | 143 |
organ system cancer | 3.39e-07 | 137 |