FFCP PHASE1:Hg19::chr17:42984119..42984130,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2670 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=4235 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-248bp_to_U92979_5end | |||
|cluster_id=chr17:42984119..42984130,- | |||
|coexpression_cluster_id=C291 | |||
|description=CAGE_peak_43_at_GFAP_5end | |||
|id=chr17:42984119..42984130,- | |||
|ontology_enrichment_celltype=CL:0002605!2.50e-18!3;CL:0000128!3.92e-08!7;CL:0000126!3.92e-08!7;CL:0000127!3.92e-08!7;CL:0002453!3.92e-08!7 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;2.40e-66;3!UBERON:0003057;2.40e-66;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.76e-83!57;UBERON:0005068!1.76e-83!57;UBERON:0006241!1.76e-83!57;UBERON:0007135!1.76e-83!57;UBERON:0001017!2.81e-73!82;UBERON:0005743!1.10e-69!86;UBERON:0002616!6.68e-64!59;UBERON:0000073!1.10e-62!94;UBERON:0001016!1.10e-62!94;UBERON:0002020!8.71e-61!34;UBERON:0003528!8.71e-61!34;UBERON:0003075!1.10e-57!86;UBERON:0007284!1.10e-57!86;UBERON:0000955!1.20e-57!69;UBERON:0006238!1.20e-57!69;UBERON:0002791!3.22e-56!33;UBERON:0002780!3.21e-55!41;UBERON:0001890!3.21e-55!41;UBERON:0006240!3.21e-55!41;UBERON:0002346!6.70e-55!90;UBERON:0001893!1.69e-54!34;UBERON:0003080!7.81e-54!42;UBERON:0001869!4.66e-46!32;UBERON:0000956!5.22e-46!25;UBERON:0000203!5.22e-46!25;UBERON:0007023!2.43e-36!115;UBERON:0003056!5.58e-36!61;UBERON:0002619!5.95e-33!22;UBERON:0000033!6.01e-33!123;UBERON:0004121!8.66e-33!169;UBERON:0000924!6.58e-32!173;UBERON:0006601!6.58e-32!173;UBERON:0000153!3.52e-31!129;UBERON:0007811!3.52e-31!129;UBERON:0001950!2.12e-30!20;UBERON:0003076!2.40e-30!15;UBERON:0003057!2.40e-30!15;UBERON:0002298!1.13e-25!8;UBERON:0000025!8.09e-21!194;UBERON:0002240!3.98e-19!3;UBERON:0006331!3.77e-18!3;UBERON:0000988!1.07e-17!3;UBERON:0002771!3.96e-17!3;UBERON:0004733!7.54e-17!12;UBERON:0002028!7.54e-17!12;UBERON:0007277!7.54e-17!12;UBERON:0002308!7.13e-16!9;UBERON:0000125!7.13e-16!9;UBERON:0004111!1.23e-15!241;UBERON:0004732!1.64e-15!13;UBERON:0000477!1.96e-13!286;UBERON:0002148!1.01e-12!2;UBERON:0009662!1.01e-12!2;UBERON:0000483!6.00e-12!309;UBERON:0000119!8.93e-12!312;UBERON:0005174!1.12e-11!5;UBERON:0001137!1.12e-11!5;UBERON:0001871!1.96e-11!7;UBERON:0002021!4.84e-11!5;UBERON:0002420!1.90e-10!9;UBERON:0007245!1.90e-10!9;UBERON:0010009!1.90e-10!9;UBERON:0010011!1.90e-10!9;UBERON:0000454!1.90e-10!9;UBERON:0002680!2.76e-10!9;UBERON:0001895!2.76e-10!9;UBERON:0010092!2.76e-10!9;UBERON:0000475!3.83e-10!365;UBERON:0000064!6.10e-10!219;UBERON:0001896!5.47e-09!3;UBERON:0005290!5.47e-09!3;UBERON:0010096!5.47e-09!3;UBERON:0000200!7.87e-09!6;UBERON:0009663!6.83e-08!7;UBERON:0003112!2.37e-07!1;UBERON:0000032!2.37e-07!1;UBERON:0005253!2.37e-07!1;UBERON:0003128!2.37e-07!1;UBERON:0002241!2.37e-07!1;UBERON:0001703!2.37e-07!1;UBERON:0004761!2.37e-07!1;UBERON:0009617!2.37e-07!1;UBERON:0002038!3.82e-07!1;UBERON:0009661!3.82e-07!1;UBERON:0002902!4.31e-07!1;UBERON:0009899!4.31e-07!1;UBERON:0002336!4.85e-07!1;UBERON:0001018!4.85e-07!1;UBERON:0002473!4.85e-07!1;UBERON:0005340!4.85e-07!1;UBERON:0002316!4.85e-07!1;UBERON:0003544!4.85e-07!1;UBERON:0001020!4.85e-07!1;UBERON:0005970!4.85e-07!1;UBERON:0002437!4.85e-07!1;UBERON:0001874!8.67e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;2.40e-66;3!UBERON:0005174;2.40e-66;3!UBERON:0001137;2.40e-66;3!UBERON:0002021;2.94e-11;5!UBERON:0000489;6.67e-08;29!UBERON:0001016;7.60e-07;83!UBERON:0001017;8.00e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,2.40e-66,3;UBERON:0005174,2.40e-66,3;UBERON:0001137,2.40e-66,3;UBERON:0003076,2.75e-14,15;UBERON:0003057,2.75e-14,15;UBERON:0002021,2.94e-11,5;UBERON:0001017,2.17e-10,81;UBERON:0001016,1.88e-09,89;UBERON:0001049,9.89e-09,56;UBERON:0005068,9.89e-09,56;UBERON:0006241,9.89e-09,56;UBERON:0007135,9.89e-09,56;UBERON:0000489,1.86e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.410623275218653,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11321717794222,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646414781807753,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0.554645257684261,0.683060432355218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,3.48697819209284,0,0.276629009856872,0.645902582527404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413373593002368,0.19024743058172,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,2.37637120261669,20.7101306515866,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413731983447581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p43@GFAP | |||
}} |
Latest revision as of 23:18, 24 September 2015
Short description: | p43@GFAP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_43_at_GFAP_5end |
Coexpression cluster: | C291_spinal_substantia_retina_medulla_tongue_skeletal_trachea |
Association with transcript: | -248bp_to_U92979_5end |
EntrezGene: | GFAP |
HGNC: | 4235 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
spinal cord | 2.40e-66 | 3 |
dorsal region element | 2.40e-66 | 3 |
dorsum | 2.40e-66 | 3 |
posterior neural tube | 2.75e-14 | 15 |
chordal neural plate | 2.75e-14 | 15 |
occipital lobe | 2.94e-11 | 5 |
central nervous system | 2.17e-10 | 81 |
nervous system | 1.88e-09 | 89 |
neural tube | 9.89e-09 | 56 |
neural rod | 9.89e-09 | 56 |
future spinal cord | 9.89e-09 | 56 |
neural keel | 9.89e-09 | 56 |
cavitated compound organ | 1.86e-07 | 31 |