FFCP PHASE1:Hg19::chr19:18893611..18893635,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-468bp_to_AK094919_5end | |||
|cluster_id=chr19:18893611..18893635,- | |||
|coexpression_cluster_id=C423 | |||
|description=CAGE_peak_1_at_AK094919_5end | |||
|id=chr19:18893611..18893635,- | |||
|ontology_enrichment_celltype=CL:0000153!6.73e-23!9;CL:0000447!6.73e-23!9;CL:0002615!9.18e-19!3;CL:0002580!9.74e-19!3;CL:0002579!1.47e-18!3;CL:0000135!2.50e-18!3;CL:0000386!2.50e-18!3;CL:0000388!2.50e-18!3;CL:0002334!1.72e-17!12;CL:0000499!4.54e-16!27;CL:0000667!7.87e-16!6;CL:0000058!7.87e-16!6;CL:0000138!7.87e-16!6;CL:0000327!1.56e-14!14;CL:0000136!6.74e-14!15;CL:0002617!4.70e-13!2;CL:0000214!9.09e-09!3;CL:0000057!1.98e-07!75;CL:0002616!3.01e-07!1;CL:0002568!8.67e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0002580;2.99e-25;3!CL:0002579;3.82e-25;3!CL:0002615;4.31e-25;3!CL:0000135;1.29e-24;3!CL:0000388;1.29e-24;3!CL:0002334;1.43e-24;12!CL:0000136;2.95e-13;13!CL:0002617;1.57e-10;2!CL:0000499;1.63e-10;28!CL:0000153;7.16e-09;9!CL:0000447;7.16e-09;9!CL:0000214;3.06e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,2.99e-25,3;CL:0002579,3.38e-25,3;CL:0002615,4.87e-25,3;CL:0000135,1.29e-24,3;CL:0000388,1.29e-24,3;CL:0002334,1.34e-24,12;CL:0000136,1.47e-11,15;CL:0002617,1.57e-10,2;CL:0000499,1.63e-10,28;CL:0000153,7.16e-09,9;CL:0000447,7.16e-09,9;CL:0000057,2.00e-08,76;CL:0000214,2.79e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:6193!8.18e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!1.60e-35!6;UBERON:0002358!1.60e-35!6;UBERON:0003684!1.60e-35!6;UBERON:0001178!1.60e-35!6;UBERON:0004457!1.31e-30!12;UBERON:0000042!1.31e-30!12;UBERON:0000043!2.50e-18!3;UBERON:0000310!6.56e-15!10;UBERON:0001443!1.56e-13!11;UBERON:0006915!9.09e-09!3;UBERON:0002018!9.09e-09!3;UBERON:0002217!9.09e-09!3;UBERON:0007616!9.09e-09!3;UBERON:0000989!4.31e-07!1;UBERON:0008811!4.31e-07!1;UBERON:0006258!4.31e-07!1;UBERON:0005876!4.31e-07!1;UBERON:0004874!4.31e-07!1;UBERON:0002135!6.12e-07!1;UBERON:0004923!6.64e-07!57;UBERON:0002363!9.18e-07!1;UBERON:0007647!9.18e-07!1;UBERON:0010115!9.18e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;5.93e-50;9!UBERON:0000042;5.93e-50;9!UBERON:0003688;1.99e-48;6!UBERON:0002358;1.99e-48;6!UBERON:0003684;1.99e-48;6!UBERON:0001178;1.99e-48;6!UBERON:0007846;1.29e-24;3!UBERON:0000043;1.29e-24;3!UBERON:0007845;1.29e-24;3!UBERON:0000310;4.23e-17;10!UBERON:0001443;1.31e-15;11!UBERON:0004458;2.12e-07;48!UBERON:0006915;3.06e-07;3!UBERON:0007616;3.06e-07;3!UBERON:0002217;3.06e-07;3!UBERON:0002018;3.06e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.99e-48,6;UBERON:0002358,1.99e-48,6;UBERON:0003684,1.99e-48,6;UBERON:0001178,1.99e-48,6;UBERON:0004457,1.32e-37,12;UBERON:0000042,1.32e-37,12;UBERON:0007846,1.29e-24,3;UBERON:0000043,1.29e-24,3;UBERON:0007845,1.29e-24,3;UBERON:0000310,4.23e-17,10;UBERON:0001443,1.31e-15,11;UBERON:0004458,2.53e-09,49;UBERON:0009569,1.25e-07,112;UBERON:0006915,2.79e-07,3;UBERON:0007616,2.79e-07,3;UBERON:0002217,2.79e-07,3;UBERON:0002018,2.79e-07,3;UBERON:0004923,6.33e-07,66 | |||
|phase1_expression=6.35874327446948,0.642301571672949,4.08767771878316,2.00146596706261,0.893922188854576,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,0.579386075843295,0.795285947051099,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0.558350568994769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23297027036899,15.4996593020943,0.561320188866147,2.69092213436972,5.62877973973374,0.321707842287215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89996871767898,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,1.84870251452567,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@AK094919 | |||
}} |
Latest revision as of 05:19, 26 July 2015
Short description: | p1@AK094919 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AK094919_5end |
Coexpression cluster: | C423_Preadipocyte_Adipocyte_Chondrocyte_tenocyte_Osteoblast_Synoviocyte_Fibroblast |
Association with transcript: | -468bp_to_AK094919_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 2.99e-25 | 3 |
omentum preadipocyte | 3.38e-25 | 3 |
adipocyte of omentum tissue | 4.87e-25 | 3 |
fibrocyte | 1.29e-24 | 3 |
tendon cell | 1.29e-24 | 3 |
preadipocyte | 1.34e-24 | 12 |
fat cell | 1.47e-11 | 15 |
adipocyte of breast | 1.57e-10 | 2 |
stromal cell | 1.63e-10 | 28 |
GAG secreting cell | 7.16e-09 | 9 |
carbohydrate secreting cell | 7.16e-09 | 9 |
fibroblast | 2.00e-08 | 76 |
synovial cell | 2.79e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.99e-48 | 6 |
peritoneum | 1.99e-48 | 6 |
abdominal cavity | 1.99e-48 | 6 |
visceral peritoneum | 1.99e-48 | 6 |
cavity lining | 1.32e-37 | 12 |
serous membrane | 1.32e-37 | 12 |
dense regular connective tissue | 1.29e-24 | 3 |
tendon | 1.29e-24 | 3 |
regular connective tissue | 1.29e-24 | 3 |
breast | 4.23e-17 | 10 |
chest | 1.31e-15 | 11 |
body cavity or lining | 2.53e-09 | 49 |
subdivision of trunk | 1.25e-07 | 112 |
stratified squamous epithelium | 2.79e-07 | 3 |
layer of synovial tissue | 2.79e-07 | 3 |
synovial joint | 2.79e-07 | 3 |
synovial membrane of synovial joint | 2.79e-07 | 3 |
organ component layer | 6.33e-07 | 66 |