FFCP PHASE1:Hg19::chr21:38071778..38071790,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6493 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10883 | |||
|TSSclassifier=strong | |||
|UniProt=Q14190 | |||
|association_with_transcript=-200bp_to_ENST00000430056,NM_005069,NM_009586,uc002yvp.2,uc002yvq.2,uc002yvr.2_5end | |||
|cluster_id=chr21:38071778..38071790,+ | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_9_at_SIM2_5end | |||
|id=chr21:38071778..38071790,+ | |||
|ontology_enrichment_celltype=CL:1000507!2.35e-08!12;CL:1000494!2.35e-08!12;CL:1000449!2.78e-08!16;CL:0000054!1.76e-07!2;CL:0000137!1.76e-07!2;CL:0000092!1.76e-07!2;CL:1000497!3.06e-07!18;CL:0002518!3.06e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000138;2.19e-12;6!CL:0002548;2.59e-12;6!CL:0000153;1.04e-08;9!CL:0000447;1.04e-08;9!CL:1000507;6.34e-08;10!CL:1000494;6.34e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,2.19e-12,6;CL:0000138,2.19e-12,6;CL:0002548,2.74e-12,6;CL:0000153,1.04e-08,9;CL:0000447,1.04e-08,9;CL:1000507,6.13e-08,10;CL:1000494,6.13e-08,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.29e-15!235;DOID:14566!8.27e-15!239;DOID:0050687!4.46e-11!143;DOID:3093!2.92e-08!11;DOID:200!1.76e-07!2;DOID:4305!1.76e-07!2;DOID:305!3.12e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:3371;1.23e-66;1!DOID:4549;1.23e-66;1!DOID:5861;1.23e-66;1!DOID:6496;1.23e-66;1!DOID:201;2.19e-12;6!DOID:0060100;2.19e-12;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.23e-66,1;DOID:4549,1.23e-66,1;DOID:5861,1.23e-66,1;DOID:6496,1.23e-66,1;DOID:201,2.19e-12,6;DOID:0060100,2.19e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0009773!2.35e-08!12;UBERON:0001231!2.35e-08!12;UBERON:0004810!2.35e-08!12;UBERON:0004211!2.78e-08!16;UBERON:0001285!2.78e-08!16;UBERON:0007684!2.78e-08!16;UBERON:0003220!2.78e-08!16;UBERON:0004208!2.78e-08!16;UBERON:0006555!9.92e-08!17;UBERON:0005103!9.92e-08!17;UBERON:0000083!9.92e-08!17;UBERON:0009201!9.92e-08!17;UBERON:0004819!9.92e-08!17;UBERON:0006553!9.92e-08!17;UBERON:0003074!9.92e-08!17;UBERON:0003060!9.92e-08!17;UBERON:0000080!3.06e-07!18;UBERON:0002120!3.06e-07!18;UBERON:0004875!3.06e-07!18;UBERON:0005721!3.06e-07!18;UBERON:0005754!3.06e-07!18;UBERON:0007297!3.06e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;2.62e-23;3!UBERON:0004755;2.62e-23;3!UBERON:0004211;6.34e-08;10!UBERON:0009773;6.34e-08;10!UBERON:0001231;6.34e-08;10!UBERON:0004810;6.34e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,2.62e-23,3;UBERON:0004755,2.62e-23,3;UBERON:0004810,6.13e-08,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.379891534993739,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0.0920809889358963,0,0,0,0.451199612907412,0,0,1.46139224653261,0.105551628892876,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,4.85408696803251,0,0.137041924646751,0.794858446811959,0,0.195551382734803,0.0801588202515337,0,0,0.144090417154106,0.114536596165916,0,0,0,0,0,0.104602846312333,0.101998217636322,0.577901179803038,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0.235265819698172,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0.295710299979268,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0.782982875895635,0,0,0.244736704506468,0.179088841081487,0.308801447160972,0,0.530067437837643,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0.212574920101683,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0.381382095467167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0.098150233615243,0.121917924982269,0,0,0,0,0.233939463462106,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0.275684698604535,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0.134704106029175,0,0,0.244209805832924,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p9@SIM2 | |||
}} |
Latest revision as of 08:01, 18 September 2015
Short description: | p9@SIM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SIM2_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -200bp_to_ENST00000430056, NM_005069, NM_009586, uc002yvp.2, uc002yvq.2, uc002yvr.2_5end |
EntrezGene: | SIM2 |
HGNC: | 10883 |
UniProt: | Q14190 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 2.19e-12 | 6 |
chondrocyte | 2.19e-12 | 6 |
cardiac fibroblast | 2.74e-12 | 6 |
GAG secreting cell | 1.04e-08 | 9 |
carbohydrate secreting cell | 1.04e-08 | 9 |
kidney tubule cell | 6.13e-08 | 10 |
nephron tubule epithelial cell | 6.13e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 2.62e-23 | 3 |
skeletal tissue | 2.62e-23 | 3 |
nephron tubule epithelium | 6.13e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.23e-66 | 1 |
extraosseous chondrosarcoma | 1.23e-66 | 1 |
myxoid chondrosarcoma | 1.23e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 1.23e-66 | 1 |
connective tissue cancer | 2.19e-12 | 6 |
musculoskeletal system cancer | 2.19e-12 | 6 |