FFCP PHASE1:Hg19::chr21:47418813..47418822,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1291 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-491bp_to_ENST00000466285_5end | |||
|cluster_id=chr21:47418813..47418822,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_3_at_COL6A1_5end | |||
|id=chr21:47418813..47418822,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.62e-48!180;CL:0000057!6.99e-27!75;CL:0000680!2.92e-19!57;CL:0000056!2.92e-19!57;CL:0000355!2.92e-19!57;CL:0000183!3.62e-19!59;CL:0000187!1.57e-18!54;CL:0000393!5.46e-18!60;CL:0000211!5.46e-18!60;CL:0000192!1.36e-13!42;CL:0000514!1.36e-13!42;CL:0000048!2.01e-11!430;CL:0002620!3.65e-11!23;CL:0000723!1.46e-10!436;CL:0000034!1.47e-10!444;CL:0000359!8.20e-10!32;CL:0000222!1.80e-07!119;CL:0002570!8.25e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.53e-13;23!CL:0000723;1.83e-11;61!CL:0000057;2.79e-11;73!CL:0000187;2.91e-11;55!CL:0000134;1.32e-10;55!CL:0000393;2.99e-10;61!CL:0000211;2.99e-10;61!CL:0000192;5.72e-10;43!CL:0002320;5.95e-10;188!CL:0000048;6.67e-10;58!CL:0000359;7.47e-10;32!CL:0002570;5.27e-09;8!CL:0002334;9.17e-09;12!CL:0000499;3.42e-08;28!CL:0000034;6.73e-08;69!CL:0000188;1.54e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.77e-31,76;CL:0000048,4.73e-27,427;CL:0000723,6.39e-26,433;CL:0000034,1.82e-24,441;CL:0000680,2.16e-20,58;CL:0000056,2.16e-20,58;CL:0000355,2.16e-20,58;CL:0000393,5.77e-20,61;CL:0000211,5.77e-20,61;CL:0000187,7.57e-20,55;CL:0000192,4.95e-14,43;CL:0000514,4.95e-14,43;CL:0002320,1.20e-13,361;CL:0002620,1.53e-13,23;CL:0000134,6.55e-11,354;CL:0000359,2.66e-10,32;CL:0002570,5.35e-09,8;CL:0000219,7.62e-09,386;CL:0002334,1.15e-08,12;CL:0000499,3.51e-08,28;CL:0000188,1.12e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000355;6.17e-11;58!CL:0000514;5.72e-10;43 | |||
|ontology_enrichment_disease=DOID:2394!4.48e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;8.35e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.12e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.11e-25!83;UBERON:0002329!3.11e-25!83;UBERON:0003077!3.11e-25!83;UBERON:0003059!3.11e-25!83;UBERON:0007282!3.11e-25!83;UBERON:0009618!3.11e-25!83;UBERON:0007285!3.11e-25!83;UBERON:0004290!3.02e-23!70;UBERON:0000486!1.60e-19!82;UBERON:0002385!3.08e-19!63;UBERON:0001015!3.08e-19!63;UBERON:0000383!3.08e-19!63;UBERON:0001134!5.19e-19!61;UBERON:0002036!5.19e-19!61;UBERON:0003082!5.19e-19!61;UBERON:0005256!1.72e-16!143;UBERON:0003102!1.95e-14!95;UBERON:0002199!1.04e-11!45;UBERON:0002416!1.04e-11!45;UBERON:0000475!1.28e-11!365;UBERON:0002100!2.09e-09!216;UBERON:0002097!4.76e-09!40;UBERON:0001013!5.13e-09!14;UBERON:0000481!8.61e-08!347;UBERON:0000490!2.27e-07!138;UBERON:0004872!4.63e-07!84;UBERON:0003104!5.81e-07!238;UBERON:0009142!5.81e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.86e-11;31!UBERON:0001015;1.86e-11;31!UBERON:0000383;1.86e-11;31!UBERON:0001013;1.96e-11;14!UBERON:0002199;1.94e-10;46!UBERON:0002416;1.94e-10;46!UBERON:0002384;8.89e-10;198!UBERON:0002097;5.88e-09;41!UBERON:0002204;9.05e-09;70!UBERON:0003102;1.43e-08;50!UBERON:0004573;3.06e-07;33!UBERON:0004571;3.06e-07;33!UBERON:0001134;3.90e-07;16!UBERON:0002036;3.90e-07;16!UBERON:0000075;4.45e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,4.69e-25,73;UBERON:0002329,5.14e-25,71;UBERON:0003059,5.14e-25,71;UBERON:0007282,5.14e-25,71;UBERON:0004290,5.14e-25,71;UBERON:0009618,5.14e-25,71;UBERON:0003077,2.13e-24,72;UBERON:0007285,2.13e-24,72;UBERON:0007503,7.56e-22,78;UBERON:0000486,6.66e-21,83;UBERON:0001134,3.72e-20,62;UBERON:0002036,3.72e-20,62;UBERON:0003082,3.72e-20,62;UBERON:0002385,4.49e-20,64;UBERON:0001015,4.49e-20,64;UBERON:0000383,4.49e-20,64;UBERON:0005256,6.70e-16,122;UBERON:0002199,1.52e-15,46;UBERON:0002416,1.52e-15,46;UBERON:0003102,1.05e-14,99;UBERON:0003104,6.97e-14,160;UBERON:0009142,6.97e-14,160;UBERON:0002384,3.23e-13,371;UBERON:0002097,7.71e-12,41;UBERON:0001013,1.93e-11,14;UBERON:0000490,2.21e-09,148;UBERON:0000926,4.33e-08,315;UBERON:0004120,4.33e-08,315;UBERON:0006603,4.33e-08,315;UBERON:0002204,5.96e-08,167;UBERON:0004573,9.97e-08,33;UBERON:0004571,9.97e-08,33;UBERON:0002100,1.73e-07,199;UBERON:0000479,5.91e-07,773;UBERON:0000075,6.27e-07,16 | |||
|phase1_expression=1.2717486548939,7.27941781229343,2.67813367782345,7.00513088471913,5.36353313312745,5.23403114460221,5.06599756336621,5.05375898741465,7.31319758959548,0.245733936501509,0,0,0,4.45558870656168,8.61633176892581,8.0679017574213,10.8485015044316,14.6062018077475,9.27072317701963,0.738726348460727,5.30401797235058,2.82109249330279,0.572471974262113,0.821246550437305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,2.43806866313962,0.670700859703636,1.02290049474824,6.50590474292219,4.51204119572301,9.27017721349272,0,2.91980922181582,0.189069634328136,0.443458794925128,0.263504357079378,0.196468613246569,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,2.40597972162702,2.64818361626438,19.5048902109193,3.19201543978521,0.560677600142307,0,1.48000529050296,1.8672662123986,2.42479209725439,3.10577615915572,3.78393569112329,2.88087962239999,0.234321431833797,6.24320153660641,0.570471821544449,9.26581819421167,3.05329696473789,3.23745888736263,3.65172097425846,3.0623125688234,7.12439040408254,6.92282733877629,3.56400857184616,13.5996811103206,0.910161361938026,12.9351265526923,1.0100166837244,3.503318556415,1.6623846929051,2.19488810440419,6.43624371177941,3.60571341375832,0.340296549480063,8.9694817844431,4.69826255400848,5.72216133130817,14.4043726120513,5.66788910811414,4.3798891807757,3.7223371266318,4.55696097051419,3.02054715999716,4.29137416214995,2.57739716198438,13.5782687727802,15.2654124782144,3.72782763442269,4.74769658469365,0.193260853163297,0,0,0.365921118388786,0.397589304964456,0.580969714347592,0.414644220061482,0.252320850875628,0.36497735907583,9.38697193978896,36.6647334769945,1.38134921352481,6.96551892047969,6.49691533502627,0,0,0,0.110293972732394,0,0,0,0,0,0.738155454624648,2.80483547606892,1.6462960453256,24.9914809355421,0,0,0,0,0.122988438543114,0.686271241194102,0,0,0,0.0925884451585296,0.977424915930974,9.35941306751621,0,0.34779121492523,0.117408694235822,0,0,0,0,0,0,0.234004265139238,0,0,1.00789276919316,0,0,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0,0,1.71072446022705,1.54241239054985,0.300343057843917,0.571652865261156,1.00917975910825,1.30788020649984,1.6134422880609,0.517086863031111,7.15312891703765,9.298330278116,3.98907174877306,0,0.514414748524284,1.41849132023278,1.8649552531127,4.86125178437702,7.5967024754802,0.823240336780769,3.25736184293735,8.17401482107855,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0,0,1.91699884393266,8.04033550838797,1.42636905040718,3.32997005335432,3.28762116080613,0.179060963239896,0,0,0,0,0,0,0,0,1.27587750330633,0,0,0,6.99341502799097,3.50119364741774,6.51036056879365,4.15941723061614,2.49800584316026,0.946214490203608,1.63997980989798,1.20378439891088,4.5481500811197,1.03473071292505,5.31380478828349,2.21243002250044,6.0818530127658,6.85304051119592,19.5591751572188,0,0,0,0,1.66435439510497,0.604780586659361,1.48864684691266,1.38115775959256,5.3325417942284,1.15325234330131,1.02341449813341,2.89537058058494,2.96836132889982,10.6404688723832,17.4010490806865,2.38168752440047,6.23105315020345,12.7831416305955,0.241718899183244,0.601519410909855,0,3.09999010044438,9.46874073634929,12.981317080983,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,1.00337954770971,0,0,0.671624264166535,0,0,0.512900250232778,0.328014645699706,0,0.103041011647722,0.732555718546747,0.41254749960294,0,1.30012049207304,6.42735719376638,2.99679226705578,5.85384745035649,5.98664331431905,4.27293374702045,3.43744783578476,8.99103502268217,5.11359764496605,3.73934549716297,0,0,0,0,0,19.203553156669,1.3940745403212,1.23213432070436,0.532306030317022,0.869932992075073,3.89180860118232,0.572499546967965,2.60510858551767,0.316379424718726,2.85945290885737,1.535386747868,0.855877976067841,1.90921948755562,3.92474320099615,1.61885211824983,7.13796277313742,4.83030849617314,1.41527737101321,3.17020642346017,1.68503382495592,2.43816869544795,5.84912375115083,2.11300293513511,5.18699663350346,10.1811911006673,1.13008116620243,2.2054613741845,1.99031692572366,2.63070531152258,2.89387767133344,1.31178950409327,0.202910376962704,2.478587984798,2.25356482025793,1.57752487424457,1.8667317792493,0,0.709522128141196,6.54433669422759,4.61012850143863,1.89736586882858,5.24902080367474,0,0,0,0.188287601553558,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.334330152832435,0,1.67121139316383,0,0,0,0.281338832821026,0.111308705022906,0,0.422250816255987,0.996239941255349,0.552567831062295,0,0,0,3.73247505194169,0.0898683511473268,0,0,0.789147245095469,0,0,0,0.278304294485554,0,0,0,0.724999575434793,0,0,0.236387681767936,0,0.291604613383254,0.347249989866585,0.885741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| |||
|short_description=p3@COL6A1 | |||
}} |
Latest revision as of 22:11, 18 September 2015
Short description: | p3@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL6A1_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -491bp_to_ENST00000466285_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.77e-31 | 76 |
multi fate stem cell | 4.73e-27 | 427 |
somatic stem cell | 6.39e-26 | 433 |
stem cell | 1.82e-24 | 441 |
muscle precursor cell | 2.16e-20 | 58 |
myoblast | 2.16e-20 | 58 |
multi-potent skeletal muscle stem cell | 2.16e-20 | 58 |
electrically responsive cell | 5.77e-20 | 61 |
electrically active cell | 5.77e-20 | 61 |
muscle cell | 7.57e-20 | 55 |
smooth muscle cell | 4.95e-14 | 43 |
smooth muscle myoblast | 4.95e-14 | 43 |
connective tissue cell | 1.20e-13 | 361 |
skin fibroblast | 1.53e-13 | 23 |
mesenchymal cell | 6.55e-11 | 354 |
vascular associated smooth muscle cell | 2.66e-10 | 32 |
mesenchymal stem cell of adipose | 5.35e-09 | 8 |
motile cell | 7.62e-09 | 386 |
preadipocyte | 1.15e-08 | 12 |
stromal cell | 3.51e-08 | 28 |
cell of skeletal muscle | 1.12e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.12e-08 | 14 |