FFCP PHASE1:Hg19::chr21:47648567..47648578,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4047 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6708 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=97bp_to_ENST00000464357_5end | |||
|cluster_id=chr21:47648567..47648578,- | |||
|description=CAGE_peak_2_at_LSS_5end | |||
|id=chr21:47648567..47648578,- | |||
|ontology_enrichment_celltype=CL:0002321!9.52e-14!248;CL:0000220!2.50e-13!246;CL:0000055!5.11e-11!180;CL:0000221!2.48e-10!71;CL:0000325!6.37e-10!39;CL:0000333!3.96e-08!41;CL:0002077!2.28e-07!33;CL:0000133!2.33e-07!59;CL:0000144!6.81e-07!625;CL:0002371!8.15e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000147;1.30e-07;14!CL:0002077;5.02e-07;34!CL:0000148;8.13e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.20e-10,250;CL:0000221,1.06e-09,72;CL:0000333,1.29e-08,41;CL:0002077,8.69e-08,34;CL:0000147,1.79e-07,14;CL:0000148,6.93e-07,10;CL:0000541,6.93e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000483!4.52e-16!309;UBERON:0000119!7.76e-16!312;UBERON:0000475!2.40e-13!365;UBERON:0004121!1.65e-12!169;UBERON:0000924!8.85e-12!173;UBERON:0006601!8.85e-12!173;UBERON:0000064!2.84e-10!219;UBERON:0000468!5.34e-10!659;UBERON:0000481!8.98e-10!347;UBERON:0000033!2.20e-09!123;UBERON:0000467!1.01e-08!625;UBERON:0000922!1.02e-08!612;UBERON:0000480!1.65e-08!626;UBERON:0000923!4.17e-08!604;UBERON:0005291!4.17e-08!604;UBERON:0006598!4.17e-08!604;UBERON:0002532!4.17e-08!604;UBERON:0000153!5.60e-08!129;UBERON:0007811!5.60e-08!129;UBERON:0002050!6.63e-08!605;UBERON:0005423!6.63e-08!605;UBERON:0005085!9.68e-08!29;UBERON:0005743!1.36e-07!86;UBERON:0000062!1.49e-07!511;UBERON:0000477!1.99e-07!286;UBERON:0005256!2.74e-07!143;UBERON:0000073!4.94e-07!94;UBERON:0001016!4.94e-07!94;UBERON:0003075!6.72e-07!86;UBERON:0007284!6.72e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,7.10e-11,306;UBERON:0000119,9.81e-11,309;UBERON:0004121,1.06e-09,171;UBERON:0000924,1.06e-09,171;UBERON:0006601,1.06e-09,171;UBERON:0010371,4.61e-09,104;UBERON:0010314,5.34e-09,132 | |||
|phase1_expression=0.726713517082227,3.42560838225573,1.40954404095971,1.0007329835313,0.893922188854576,0,7.59899634504932,1.26343974685366,4.17897005119742,0.491467873003018,5.58240934377942,2.40285509343189,2.11013582582763,0.37129905888014,0,0,0.602694528023977,0,0.487932798790507,1.10808952269109,0.612002073732759,2.19418305034661,2.28988789704845,1.50561867580173,2.76193807108566,0.152826811495903,0,0.0787107813136792,0.393364276848904,0,0.154816123316076,5.51652734687356,3.91567694411725,2.21852406100073,0.154934401160603,0.853015394924529,0,0,0.401088894940283,0.217010870715852,1.11957737119962,0,0.77272670290256,0,0,0,0.232429036905685,0,0,0,0,0,0.689491361473237,0,0,0,0.272906150057846,0.224723484445085,0.612167784741805,0.320929027076094,0,0,0,0,1.16083695451434,0.56738522469114,0.622822248995575,0,0,0,0,0.736555271975129,0.632924774881769,0,0,0,0.22465726229299,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0.661044872784862,0,0.569212969109448,0,0.382273228125229,1.32171328579026,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0.670700859703636,0.383587685530591,0.722878304769133,0,0.144846518960824,0,0.973269740605272,0.945348171640679,1.99556457716308,1.75669571386252,0.523916301990851,1.82147644146271,0.741568885568859,0,0.174129737299267,1.32957960518865,0.953962497221368,1.14398982156026,0,1.39133685156694,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0.417989933073621,2.06733407335463,1.77883131343355,1.33888245105868,3.22263453687318,0.760272105718513,2.19655851793353,0,0.81014194788176,0.803697554556718,0.673588117878509,0.900891843866578,0,0,0.916008719652036,0,0,3.92484646928281,0.993943903390637,0.506522046658319,3.44263870114369,0.573673241497627,1.77334191099179,2.80338800071154,0,2.4666754841716,1.24484414159907,1.0776853765575,0.817309515567294,1.36221684880438,1.72852777344,1.40592859100278,1.87296046098192,1.1409436430889,2.09228152772521,2.23125547423153,1.94247533241758,2.52811452064047,3.26646674007829,4.29920110591188,2.78979609174567,3.56400857184616,1.97813543422845,1.82032272387605,7.18618141816238,2.52504170931099,2.62748891731125,2.49357703935765,0.438977620880838,0,1.20190447125277,1.58805056424029,0.717558542755448,0.427114777637135,0.211931901159562,0.300091096084402,0.412210116953756,0.257640540045629,0.37223371266318,0.337552664482532,0.389748020644795,0.504867548488229,0.460249493211497,0.80823028409406,0,0.201504196455281,0.508681776931463,5.02478218224572,2.18196896472668,1.72082757233402,1.46368447355514,1.72288698817931,1.2781333715647,1.86589899027667,1.51392510525377,1.45990943630332,3.12899064659632,1.92972281457866,2.76269842704961,0.928735856063958,2.16563844500876,1.41968160047813,0.842923450390509,1.92808823906786,1.43382164552112,1.96091499683166,1.42362371466658,1.21348177344148,2.15843611637881,3.46272441251751,1.4763109092493,2.80483547606892,4.115740113314,10.2906097969879,3.80265104465493,0,1.77236972004421,0.441463099414651,0.368965315629341,1.02940686179115,6.36551655370028,2.24803506515239,4.82539067575828,0.555530670951178,3.25808305310325,8.31947828223663,1.44331342025273,3.13012093432707,0.117408694235822,2.02113026865503,1.38895653772983,0.951270761172991,1.58040879591855,3.43394464837949,1.23108503043699,0.702012795417713,1.78357394746474,2.81201501960331,4.03157107677263,2.1266264586358,0.806026704325635,2.03443756959773,3.83382679165211,0,0.088048434013226,0.621984346622316,0,0.12624243342638,6.60378100638558,4.20187268114105,1.17217447210047,6.84289784090821,2.57068731758309,2.70308752059526,8.00314011365619,1.23344192779897,0,0.36669142910475,0.646358578788889,10.7296933755565,0,2.6593811658487,2.08014873822732,0.514414748524284,2.83698264046557,0,4.00338382242813,0,1.64648067356154,0.325736184293735,3.909311436168,0,1.20575750823834,0.871533458600294,1.99945982364114,3.64871341923571,3.01354254859276,2.10833939483032,1.91699884393266,4.59447743336456,1.42636905040718,0.723906533337896,0.821905290201534,0.895304816199478,0.224170287987055,0.394061520403854,0.215627574859517,0.256686072559497,0.254094624222463,1.30139853857622,0,0.670065061337395,1.27587750330633,0,0,0,0,1.00034104211935,0.271265023699736,0.415941723061614,1.07057393278297,0.788512075169673,0.819989904948992,0.300946099727719,6.82222512167955,8.27784570340039,0,0.921845842708516,4.51794795234031,11.356467132839,3.43143423810856,0,0,0.213455115606889,0.909382714338778,0,4.5358543999452,0,0.153461973288062,0.561320188866147,0.768834895534206,1.02341449813341,0.64341568457443,1.48418066444991,0.616838775210622,0.177561725313127,0.492762936082855,0.519254429183621,0.232420756919918,0.362578348774867,0.802025881213139,0.0920809889358963,0.34444334449382,0.728364672026868,6.68734516293063,4.06079651616671,1.07821471946181,2.35304930753057,2.92278449306521,0.105551628892876,4.54933536283586,2.55140557914773,0,0,1.89662506280697,4.51520796469368,0.764628819135115,4.98645605357235,4.25362033972139,0.219259876645935,0.261435451024901,5.89835287767695,3.60816110269676,0.976135183992909,0.412164046590889,3.02179233900533,1.56768049849117,2.87132768998086,1.30012049207304,0,0.193341436584244,0.924291702687866,0.921022048356777,0.275673144969061,1.39646318328756,1.59518363305651,1.44885266607372,0.712256285173899,0.495854746082934,0.192190067365106,1.40373983744043,0.30347334256665,0,0.31481234683064,0,0,0,1.73986598415015,1.29726953372744,0.286249773483982,5.21021717103534,4.11293252134344,9.72213989011507,6.90924036540602,3.85145089230528,0.95460974377781,0.78494864019923,5.93579110024939,6.86342574340137,6.9509317383955,1.01091240786658,3.17020642346017,1.68503382495592,6.82687234725426,0,1.05650146756755,0.409499734223957,2.68670320712054,0,0.551365343546124,0.66343897524122,0,4.05142873986681,7.87073702455959,0.608731130888112,1.239293992399,1.40847801266121,2.72481569187698,1.17898849215745,0,3.90237170477658,1.05553817648832,0.658589785919804,2.65631221636001,2.44954304171488,0.962221127255121,1.34060455107157,4.3556393944529,0.659006605437454,2.58303223602738,1.68471475667626,2.66058092122005,0.689170200620878,0,0,0,0,0,0,0,0,1.1750647824022,0.962479855263359,0,1.30062222588003,0.144269212976445,0.924843963529383,0.159426272728822,0.399158742865633,0,4.23347165447766,0.324621940274555,2.52717460302113,2.28234679033192,0,0,0,0,0,0.425846237690326,1.03051603426729,0,0,0,0,0,1.23087398947712,0,0.66614393599564,1.4098700508785,0,0.73254089635947,0.121360521749513,0,0.284136146806413,0.23874448473769,0.296964680832639,0.307160702099232,0,0.281338832821026,0.556543525114529,0,0.211125408127993,0.996239941255349,0.828851746593443,0,1.1249555075237,3.07712013652674,0,0.269605053441981,0,0,0.591860433821602,0,0,1.93866549219044,0.927680981618513,1.99613798001194,1.82299432759663,0.61221999997337,2.89999830173917,0,0.254253650292766,0.236387681767936,1.03423011972439,0.583209226766509,1.04174996959975,1.77148277162768,0.120596438625408,0,0.110579259931225,2.06883333267483,0.658156191461918,0,0,0.153900517007594,0.91153644677601,0,0.0897576444097721,0.54323685961004,0.638002319463839,0.183195186803725,0,0,0,0.498635045700469,0,0,0,0,0,0.843992258112108,0,0.848118428603645,0.649165919226273,0,0.530745387020035,0.611030144933625,0,0,0.104421949505455,2.69604531922708,0.802577647298789,0.468528891450678,0,0,2.67058417487502,0,1.20990716048664,0.30607276163049,0.442306057399416,0.450970258243478,0.103688191397247,1.32930774541437,0.330991955875499,0,0,0,0,0.694238953340524,0,0.435296032902013,0,1.89184635718778,0,0,0.164230914106418,0.581934098930517,1.235585773681,0.90392296312213,0.685209623233754,0.19871461170299,0.949661939338181,0.391102765469606,0.480952921509202,0.213452994739353,0.19980960958213,0,1.14536596165916,1.20116498503375,0.14405479798815,0.49701014226173,0,1.22313785466253,1.255234155748,0.407992870545287,2.02265412931063,1.20084057741958,3.14882371451584,0,0,0.262887354279314,0.279282401272254,0,0,0.599037001496973,1.28767814440971,0,0.671834724867263,0,4.65983798109815,1.26053091691558,1.7307330260045,1.21326378937533,0.295282444544246,0.254019996197353,1.59045937961861,0.817220436669454,1.44677833618517,2.33817042215297,0.83088067605837,0.899895566206002,0.77380195455795,0.91124334987037,0,0.157611414598396,0.157363764404994,0.528001682597033,0,0.191915197319445,0.714695326373367,0,0.25426853765475,1.08599920350743,2.5926644736038,0,1.19730191562487,0.082092520749339,0.851940108927109,1.13312091520126,0,6.62534444561107,1.80996138906171,1.98348902614035,0.342173675768659,0,1.06787412567695,0,0,0,0,0.974340787047167,0,3.80812462358632,1.5041393641362,0.919036730290385,1.96723578425883,0,0,0.366078794705889,0.876336514945499,1.72022758707021,1.99672292766334,2.98062734118641,0.138348634936231,0,0.303298235083296,0.285465333544967,0,1.40500471742064,1.30428925749743,0.149254802886874,1.16856654923612,0,1.51522404220071,1.25783950876288,3.55924488638614,4.80564143633539,2.87338755150154,1.24349760466224,1.03498604992744,0.477890301491107,3.59842489730884,0.310525913752519,0,0,2.60872530905867,2.25386413495828,1.90402606084398,0,0.909243296012797,5.90758063733687,1.39210127963548,0.796191777397232,0.400027764663154,1.03018711554838,0.336749488765919,0,1.15571898244382,1.50109113962448,0,0,0,0,0.537266523244462,0.308801447160972,0.657852148736121,0.706756583783524,0.771656153083659,0.506827321959218,0.256241518587947,3.10887307558079,2.43087964941906,2.07387654227596,0,0.132864840313363,0.490696182767533,0.327609848846413,0,0,0.19998739585493,0,0.861074898304078,1.13503190713367,0.552317850755522,0.139879507719444,0,0.895260599125562,0.646948868380091,0.471797825567689,0.327628914576042,0.678930119816101,0.212574920101683,0.123935764259002,0,0.636008701306837,0.394308725006267,0,0.352675943690684,0.918736432059601,0.963438376446893,0,1.59633859057151,1.23069818544453,0.504143392443436,1.10651603942749,0.645902582527404,0,0.196295437002051,0.11796972334774,0.733714394086716,0.115525666150338,0,0,3.97832444232549,0.526472298444801,0.60511520611056,0,0.261906694481422,1.14640342257068,0,1.2156765231311,2.34323429584154,0.413373593002368,0.951237152908602,0,0,0,0,0.127762427639595,0,0,0.606965604236632,0,1.06442844195167,0.576169937778896,0.685952037749674,3.73833531372574,1.64431933907123,0.590969204419841,0.222462803784138,0.235479278551542,0.628462359664008,0.560544326627578,1.82631744101899,0,0,1.28657779517981,0.632054446930906,0,0,3.20684545892101,1.24329698497822,0.3414369541879,0.691259661814092,0,1.18332000730565,1.78948149994231,0,0.22910686854405,3.1020638566432,0,0.111855431797792,0,0.365753774946808,0,1.43727929598746,0,0.485710993059139,2.80727356154527,0.596852325484105,0.475680363110274,0,0.109940516745429,0.301925687133347,0.154348316215889,0,0,0.735444965261716,0.235676547101626,1.96308467114945,2.0793248022896,3.8039015482506,0.679708458751268,0,0.193373663920732,0.299823467774787,0,0,0.0802413666891683,0,0,3.44014999563483,1.10440093535229,1.63179576458195,1.30905207102113,0.5290268405154,0.371995018166751,0.462175628631418,0,1.89249637252618,3.27796715891087,0.506794004045748,1.63182127587171,0.801652215796681,1.92979289023174,1.0028301571695,0.530450887527676,0,0.829169439458779,1.96522692137601,0.639701945702943,0,0,0.0620747142958579,0.112131862580613,0.0636471582781649,0.202117188958219,0,0,0,0.143444410785353,0.332660356546013,0,0.960546112899439,0,0,0,0.122241444182866,0,0,0.402547587182052,1.28227396921293 | |||
|short_description=p2@LSS | |||
}} |
Latest revision as of 23:29, 18 September 2015
Short description: | p2@LSS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LSS_5end |
Coexpression cluster: | NA |
Association with transcript: | 97bp_to_ENST00000464357_5end |
EntrezGene: | LSS |
HGNC: | 6708 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.20e-10 | 250 |
ectodermal cell | 1.06e-09 | 72 |
migratory neural crest cell | 1.29e-08 | 41 |
ecto-epithelial cell | 8.69e-08 | 34 |
pigment cell | 1.79e-07 | 14 |
melanocyte | 6.93e-07 | 10 |
melanoblast | 6.93e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
epithelium | 7.10e-11 | 306 |
cell layer | 9.81e-11 | 309 |
ectoderm-derived structure | 1.06e-09 | 171 |
ectoderm | 1.06e-09 | 171 |
presumptive ectoderm | 1.06e-09 | 171 |
ecto-epithelium | 4.61e-09 | 104 |
structure with developmental contribution from neural crest | 5.34e-09 | 132 |