FFCP PHASE1:Hg19::chr3:134049971..134049973,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:134049971..134049973,- | |||
|coexpression_cluster_id=C513 | |||
|description=CAGE_peak_at_chr3:134049971..134049973,- | |||
|id=chr3:134049971..134049973,- | |||
|ontology_enrichment_celltype=CL:0002368!3.42e-16!13;CL:0000066!2.21e-15!254;CL:0002202!5.48e-12!9;CL:0002632!5.48e-12!9;CL:0002076!3.42e-10!43;CL:0000223!1.56e-07!59;CL:0000076!2.55e-07!62;CL:0002321!7.79e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002202;9.62e-22;9!CL:0002632;9.62e-22;9!CL:0002328;1.95e-17;3!CL:0002368;7.13e-15;13!CL:0000307;1.43e-08;3!CL:0000239;7.44e-08;3!CL:1000615;7.44e-08;3!CL:0002306;7.44e-08;3!CL:0000082;5.17e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,5.97e-22,9;CL:0002632,5.97e-22,9;CL:0002328,1.57e-17,3;CL:0002368,5.16e-15,13;CL:0000066,9.91e-09,253;CL:0000068,1.44e-08,3;CL:0000069,1.44e-08,3;CL:0000307,1.44e-08,3;CL:0000377,1.44e-08,3;CL:0000239,5.44e-08,3;CL:1000615,5.44e-08,3;CL:0002306,5.44e-08,3;CL:0002076,2.59e-07,42;CL:0000082,4.31e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000377;1.43e-08;3 | |||
|ontology_enrichment_disease=DOID:162!1.76e-15!235;DOID:14566!9.50e-15!239;DOID:305!5.90e-13!106;DOID:0050687!5.23e-12!143;DOID:1749!3.91e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.05e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.08e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0007196!5.16e-07!14;UBERON:0001558!5.16e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.95e-17;3!UBERON:0002031;1.95e-17;3!UBERON:0007196;8.27e-13;15!UBERON:0001558;8.27e-13;15!UBERON:0002185;1.17e-10;5!UBERON:0002113;8.33e-10;24!UBERON:0011143;8.33e-10;24!UBERON:0000489;5.80e-08;29!UBERON:0006853;7.44e-08;3!UBERON:0007685;7.44e-08;3!UBERON:0004134;7.44e-08;3!UBERON:0000485;9.88e-08;7!UBERON:0006554;1.14e-07;30!UBERON:0001008;1.14e-07;30!UBERON:0005178;3.68e-07;34!UBERON:0002224;3.68e-07;34!UBERON:0004802;5.17e-07;19!UBERON:0000115;5.17e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.57e-17,3;UBERON:0002031,1.57e-17,3;UBERON:0007196,6.26e-13,15;UBERON:0001558,6.26e-13,15;UBERON:0002185,1.03e-10,5;UBERON:0002113,4.59e-09,26;UBERON:0003918,4.59e-09,26;UBERON:0011143,4.59e-09,26;UBERON:0005095,4.59e-09,26;UBERON:0007687,4.59e-09,26;UBERON:0006853,5.44e-08,3;UBERON:0007685,5.44e-08,3;UBERON:0004134,5.44e-08,3;UBERON:0009569,1.31e-07,112;UBERON:0005177,1.48e-07,101;UBERON:0000489,1.85e-07,31;UBERON:0005178,3.78e-07,34;UBERON:0002224,3.78e-07,34;UBERON:0004802,4.31e-07,19;UBERON:0000115,4.31e-07,19;UBERON:0005181,6.44e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0.123766352960047,0.662794751455832,0,0,0,0,0,0,0,0,0.273748850145768,0.125542639594803,0,0,0,0,0,0,8.27479102031034,2.409647350226,2.58827807116751,0.387336002901508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0,0,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,1.53316637465883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404132016209064,0,0,0,0,0,1.1409436430889,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0.36497735907583,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20634766893957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.141775097242386,0.447792613514241,0.581267877027924,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.348631135379878,0,0,0,0,0,0,0,0.0770153371044148,0,1.46139224653261,0,0,0.170093705276516,0,0,0,0,0,1.66215201785745,1.34324852833307,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0.827019434907183,0,0.145016693914229,0,0,0.330569830721956,0.192190067365106,0.510450849978337,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0.421258456238981,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0.48111056362756,4.02181365321472,22.8671068208777,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24330549367694,1.92495971052672,1.22520107990516,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,1.70481688083848,0.23874448473769,0,0.307160702099232,0,0,0,0,3.1668811219199,0,0,0,0.102268682502155,0.123084805461069,0,1.79736702294654,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.1137934482855,0.254253650292766,2.36387681767936,0,0,0,0,0,0,0,0,0,0.762569244632931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0.158936578980379,0.843992258112108,0,0.424059214301822,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0.853828638089378,0,0.867798691675654,0.293977192243133,2.26353937109047,0,0,0.19351266257817,0,0,0,0,0,1.09633539717401,0.19871461170299,0,0,0.240476460754601,0,0.799238438328521,0,0.114536596165916,0,0.14405479798815,0,1.17847017308398,1.63085047288337,1.569042694685,0.203996435272644,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508039992394707,0,0,0,0,0,0,0,0,0.670869375198532,0,0,0,0,0.959575986597226,0,0,1.017074150619,0,0,0,0,0.246277562248017,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0.74988244777264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0.159296767163702,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0.521988583930423,0.226705925512272,0.694567422971502,0.489473409012935,0.179088841081487,0.308801447160972,0,0,0.38582807654183,0.337884881306145,0,0.345430341731199,0,0,0,0,0,0.655219697692825,0,1.05656061679314,0,0,0,5.67515953566836,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.733714394086716,6.70048863671962,0,0,0.198916222116275,0,0.20170506870352,0,0.261906694481422,0.818859587550484,0.147856086217045,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0,0,0,0,0,0,1.06374456795571,0,0,0,0,0,0,0,0,0,0.23248285073625,0.173858272302579,0,0,0,0,0.430227358820278,0,0,0,3.43660302816075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,6.70500256259814,0,0,0,0,0,0,0,0,0,0,0,1.00933139868063,0.218531143927391,0.380095503034311,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,2.01837352645104,0,0,0,0,0,0,0,0.407016343054873,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:134049971..134049973,- | |||
}} |
Latest revision as of 16:04, 29 July 2015
Short description: | p@chr3:134049971..134049973, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:134049971..134049973, - |
Coexpression cluster: | C513_Tracheal_Bronchial_squamous_bronchial_Small_oral_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 5.97e-22 | 9 |
epithelial cell of lower respiratory tract | 5.97e-22 | 9 |
bronchial epithelial cell | 1.57e-17 | 3 |
respiratory epithelial cell | 5.16e-15 | 13 |
epithelial cell | 9.91e-09 | 253 |
duct epithelial cell | 1.44e-08 | 3 |
branched duct epithelial cell | 1.44e-08 | 3 |
tracheal epithelial cell | 1.44e-08 | 3 |
tracheoblast | 1.44e-08 | 3 |
brush border epithelial cell | 5.44e-08 | 3 |
kidney cortex tubule cell | 5.44e-08 | 3 |
epithelial cell of proximal tubule | 5.44e-08 | 3 |
endo-epithelial cell | 2.59e-07 | 42 |
epithelial cell of lung | 4.31e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.57e-17 | 3 |
epithelium of bronchus | 1.57e-17 | 3 |
tracheobronchial tree | 6.26e-13 | 15 |
lower respiratory tract | 6.26e-13 | 15 |
bronchus | 1.03e-10 | 5 |
kidney | 4.59e-09 | 26 |
kidney mesenchyme | 4.59e-09 | 26 |
upper urinary tract | 4.59e-09 | 26 |
kidney rudiment | 4.59e-09 | 26 |
kidney field | 4.59e-09 | 26 |
renal cortex tubule | 5.44e-08 | 3 |
region of nephron tubule | 5.44e-08 | 3 |
proximal tubule | 5.44e-08 | 3 |
subdivision of trunk | 1.31e-07 | 112 |
trunk region element | 1.48e-07 | 101 |
cavitated compound organ | 1.85e-07 | 31 |
thoracic cavity element | 3.78e-07 | 34 |
thoracic cavity | 3.78e-07 | 34 |
respiratory tract epithelium | 4.31e-07 | 19 |
lung epithelium | 4.31e-07 | 19 |
thoracic segment organ | 6.44e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.08e-09 | 14 |