FFCP PHASE1:Hg19::chr9:92033169..92033215,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr9:92033169..92033215,-
|short_description=p3@SEMA4D
|description=CAGE_peak_3_at_SEMA4D_5end
|association_with_transcript=-21bp_to_ENST00000464051_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10507 | |EntrezGene=10507 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10732 | |HGNC=10732 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-21bp_to_ENST00000464051_5end | |||
|cluster_id=chr9:92033169..92033215,- | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_3_at_SEMA4D_5end | |||
|id=chr9:92033169..92033215,- | |||
|ontology_enrichment_celltype=CL:0000542!6.80e-32!53;CL:0000051!6.80e-32!53;CL:0000838!3.96e-31!52;CL:0002087!9.74e-25!119;CL:0000738!4.20e-22!140;CL:0002031!3.22e-21!124;CL:0002032!1.05e-17!165;CL:0000837!1.05e-17!165;CL:0000037!1.13e-17!172;CL:0000566!1.13e-17!172;CL:0000988!5.69e-17!182;CL:0000945!8.62e-16!24;CL:0000826!8.62e-16!24;CL:0000084!1.07e-15!25;CL:0000827!1.07e-15!25;CL:0000791!4.43e-14!18;CL:0000789!4.43e-14!18;CL:0002420!4.43e-14!18;CL:0002419!4.43e-14!18;CL:0000790!4.43e-14!18;CL:0000236!2.74e-11!14;CL:0000625!1.48e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000945;4.08e-19;24!CL:0000349;7.66e-18;19!CL:0000542;3.76e-15;53!CL:0000236;4.05e-15;13!CL:0002577;1.51e-14;3!CL:0000624;4.41e-11;6!CL:0002536;1.20e-09;2!CL:0000084;1.86e-09;25!CL:0002537;7.01e-09;5!CL:0000791;9.94e-08;18!CL:0000789;9.94e-08;18!CL:0002419;9.94e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.38e-24,52;CL:0000542,4.88e-24,53;CL:0000051,4.88e-24,53;CL:0000945,3.33e-19,24;CL:0000826,3.33e-19,24;CL:0000349,7.16e-18,19;CL:0002577,1.42e-14,3;CL:0000236,4.10e-14,14;CL:0000624,7.20e-11,6;CL:0002536,1.15e-09,2;CL:0000084,2.18e-09,25;CL:0000827,2.18e-09,25;CL:0002537,6.84e-09,5;CL:0002087,1.20e-08,115;CL:0002031,4.03e-08,120;CL:0000791,1.22e-07,18;CL:0000789,1.22e-07,18;CL:0002420,1.22e-07,18;CL:0002419,1.22e-07,18;CL:0000790,1.22e-07,18;CL:0000738,1.36e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000051;3.76e-15;53!CL:0000790;9.94e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.84e-14!115;UBERON:0005631!2.29e-12!14;UBERON:0000158!2.29e-12!14;UBERON:0003124!5.72e-08!7;UBERON:0000478!6.40e-08!24;UBERON:0002619!3.43e-07!22;UBERON:0001987!5.47e-07!4;UBERON:0004340!5.47e-07!4;UBERON:0001950!7.74e-07!20;UBERON:0001893!9.67e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;6.15e-16;7!UBERON:0005631;8.53e-16;10!UBERON:0000158;8.53e-16;10!UBERON:0000478;9.02e-14;24!UBERON:0001987;5.07e-11;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.31e-25,14;UBERON:0000158,7.31e-25,14;UBERON:0000305,5.79e-16,7;UBERON:0004871,6.22e-14,8;UBERON:0000478,8.56e-14,24;UBERON:0001987,4.83e-11,4;UBERON:0004340,4.83e-11,4;UBERON:0003124,7.84e-11,7 | |||
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| ||
|short_description=p3@SEMA4D | |||
}} | }} |
Latest revision as of 05:09, 18 September 2015
Short description: | p3@SEMA4D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SEMA4D_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | -21bp_to_ENST00000464051_5end |
EntrezGene: | SEMA4D |
HGNC: | 10732 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.38e-24 | 52 |
lymphocyte | 4.88e-24 | 53 |
common lymphoid progenitor | 4.88e-24 | 53 |
lymphocyte of B lineage | 3.33e-19 | 24 |
pro-B cell | 3.33e-19 | 24 |
extraembryonic cell | 7.16e-18 | 19 |
placental epithelial cell | 1.42e-14 | 3 |
B cell | 4.10e-14 | 14 |
CD4-positive, alpha-beta T cell | 7.20e-11 | 6 |
amniotic epithelial cell | 1.15e-09 | 2 |
T cell | 2.18e-09 | 25 |
pro-T cell | 2.18e-09 | 25 |
amnion mesenchymal stem cell | 6.84e-09 | 5 |
nongranular leukocyte | 1.20e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 4.03e-08 | 120 |
mature alpha-beta T cell | 1.22e-07 | 18 |
alpha-beta T cell | 1.22e-07 | 18 |
immature T cell | 1.22e-07 | 18 |
mature T cell | 1.22e-07 | 18 |
immature alpha-beta T cell | 1.22e-07 | 18 |
leukocyte | 1.36e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 7.31e-25 | 14 |
membranous layer | 7.31e-25 | 14 |
amnion | 5.79e-16 | 7 |
somatic layer of lateral plate mesoderm | 6.22e-14 | 8 |
extraembryonic structure | 8.56e-14 | 24 |
placenta | 4.83e-11 | 4 |
allantois | 4.83e-11 | 4 |
chorion | 7.84e-11 | 7 |