FFCP PHASE1:Hg19::chr4:152149033..152149117,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=152503 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30418 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000514013_5end | |||
|cluster_id=chr4:152149033..152149117,- | |||
|coexpression_cluster_id=C2779 | |||
|description=CAGE_peak_1_at_SH3D19_5end | |||
|id=chr4:152149033..152149117,- | |||
|ontology_enrichment_celltype=CL:0000055!6.06e-15!180;CL:0000057!4.34e-14!75;CL:0000222!4.70e-12!119;CL:0000136!2.51e-11!15;CL:0000680!3.34e-10!57;CL:0000056!3.34e-10!57;CL:0000355!3.34e-10!57;CL:0000183!1.39e-09!59;CL:0000187!1.53e-09!54;CL:0002139!2.00e-08!24;CL:0000393!9.33e-07!60;CL:0000211!9.33e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000136;7.27e-11;13!CL:0002139;8.45e-09;24!CL:0000071;5.29e-07;18!CL:0002334;9.31e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.18e-14,76;CL:0000136,7.77e-12,15;CL:0000222,9.99e-12,121;CL:0000680,6.19e-11,58;CL:0000056,6.19e-11,58;CL:0000355,6.19e-11,58;CL:0000187,3.09e-10,55;CL:0002139,8.74e-09,24;CL:0000393,1.48e-07,61;CL:0000211,1.48e-07,61;CL:0000192,4.02e-07,43;CL:0000514,4.02e-07,43;CL:0000071,5.51e-07,18;CL:0002546,5.51e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;5.29e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!8.06e-20!365;UBERON:0000477!4.74e-19!286;UBERON:0000119!3.91e-18!312;UBERON:0007023!6.78e-18!115;UBERON:0004111!7.60e-18!241;UBERON:0000483!1.33e-17!309;UBERON:0004872!5.27e-16!84;UBERON:0000468!8.47e-16!659;UBERON:0000914!1.92e-15!83;UBERON:0002329!1.92e-15!83;UBERON:0003077!1.92e-15!83;UBERON:0003059!1.92e-15!83;UBERON:0007282!1.92e-15!83;UBERON:0009618!1.92e-15!83;UBERON:0007285!1.92e-15!83;UBERON:0002049!1.38e-14!79;UBERON:0007798!1.38e-14!79;UBERON:0000025!1.74e-13!194;UBERON:0000467!4.04e-13!625;UBERON:0000055!5.55e-13!69;UBERON:0000480!6.85e-13!626;UBERON:0000486!1.35e-12!82;UBERON:0004290!2.69e-12!70;UBERON:0000481!3.32e-12!347;UBERON:0001009!4.55e-12!113;UBERON:0001981!8.82e-12!60;UBERON:0007500!8.82e-12!60;UBERON:0004537!8.82e-12!60;UBERON:0006965!8.82e-12!60;UBERON:0004535!9.30e-12!110;UBERON:0002385!3.53e-11!63;UBERON:0001015!3.53e-11!63;UBERON:0000383!3.53e-11!63;UBERON:0001134!8.25e-11!61;UBERON:0002036!8.25e-11!61;UBERON:0003082!8.25e-11!61;UBERON:0005256!1.07e-09!143;UBERON:0000033!2.24e-09!123;UBERON:0002100!4.04e-09!216;UBERON:0002616!4.07e-09!59;UBERON:0000153!4.09e-09!129;UBERON:0007811!4.09e-09!129;UBERON:0003914!7.19e-09!118;UBERON:0002050!9.59e-09!605;UBERON:0005423!9.59e-09!605;UBERON:0000923!9.85e-09!604;UBERON:0005291!9.85e-09!604;UBERON:0006598!9.85e-09!604;UBERON:0002532!9.85e-09!604;UBERON:0000490!1.15e-08!138;UBERON:0000922!2.40e-08!612;UBERON:0000479!2.88e-08!787;UBERON:0001049!3.94e-08!57;UBERON:0005068!3.94e-08!57;UBERON:0006241!3.94e-08!57;UBERON:0007135!3.94e-08!57;UBERON:0001013!4.93e-08!14;UBERON:0001637!1.83e-07!42;UBERON:0003509!1.83e-07!42;UBERON:0004572!1.83e-07!42;UBERON:0004573!2.34e-07!33;UBERON:0004571!2.34e-07!33;UBERON:0000955!3.21e-07!69;UBERON:0006238!3.21e-07!69;UBERON:0004121!4.89e-07!169;UBERON:0003075!6.14e-07!86;UBERON:0007284!6.14e-07!86;UBERON:0003102!6.15e-07!95;UBERON:0000064!8.47e-07!219;UBERON:0003080!8.58e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;2.26e-08;14!UBERON:0002385;1.17e-07;31!UBERON:0001015;1.17e-07;31!UBERON:0000383;1.17e-07;31!UBERON:0004573;1.99e-07;33!UBERON:0004571;1.99e-07;33!UBERON:0000947;5.12e-07;21!UBERON:0010191;5.12e-07;21!UBERON:0004638;5.29e-07;18!UBERON:0001986;5.29e-07;18!UBERON:0004852;5.29e-07;18!UBERON:0000055;6.72e-07;65!UBERON:0007500;8.02e-07;56!UBERON:0001981;8.02e-07;56!UBERON:0004537;8.02e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.91e-19,114;UBERON:0004872,2.50e-16,83;UBERON:0004111,2.49e-15,240;UBERON:0000119,4.38e-15,309;UBERON:0000483,1.39e-14,306;UBERON:0002049,4.84e-14,78;UBERON:0007798,4.84e-14,78;UBERON:0000055,1.65e-13,68;UBERON:0003077,2.05e-13,72;UBERON:0007285,2.05e-13,72;UBERON:0007524,2.36e-13,73;UBERON:0002329,3.82e-13,71;UBERON:0003059,3.82e-13,71;UBERON:0007282,3.82e-13,71;UBERON:0004290,3.82e-13,71;UBERON:0009618,3.82e-13,71;UBERON:0000486,9.93e-13,83;UBERON:0007503,2.72e-12,78;UBERON:0007500,3.48e-12,59;UBERON:0001981,3.48e-12,59;UBERON:0004537,3.48e-12,59;UBERON:0006965,3.48e-12,59;UBERON:0002385,5.77e-12,64;UBERON:0001015,5.77e-12,64;UBERON:0000383,5.77e-12,64;UBERON:0001009,7.20e-12,112;UBERON:0010314,7.62e-12,132;UBERON:0000025,1.35e-11,192;UBERON:0001134,1.42e-11,62;UBERON:0002036,1.42e-11,62;UBERON:0003082,1.42e-11,62;UBERON:0004535,1.52e-11,109;UBERON:0000479,6.61e-10,773;UBERON:0000490,9.09e-10,148;UBERON:0002050,6.92e-09,564;UBERON:0005256,1.08e-08,122;UBERON:0000923,1.63e-08,560;UBERON:0010316,1.63e-08,560;UBERON:0005291,1.63e-08,560;UBERON:0006598,1.63e-08,560;UBERON:0010317,1.63e-08,560;UBERON:0002532,1.63e-08,560;UBERON:0001013,2.26e-08,14;UBERON:0003914,4.17e-08,117;UBERON:0004923,7.77e-08,66;UBERON:0001637,8.98e-08,42;UBERON:0003509,8.98e-08,42;UBERON:0004572,8.98e-08,42;UBERON:0004573,1.16e-07,33;UBERON:0004571,1.16e-07,33;UBERON:0000926,1.84e-07,315;UBERON:0004120,1.84e-07,315;UBERON:0006603,1.84e-07,315;UBERON:0003102,1.93e-07,99;UBERON:0004638,5.51e-07,18;UBERON:0001986,5.51e-07,18;UBERON:0004852,5.51e-07,18;UBERON:0000947,5.56e-07,21;UBERON:0010191,5.56e-07,21;UBERON:0003104,6.34e-07,160;UBERON:0009142,6.34e-07,160;UBERON:0001049,8.10e-07,56;UBERON:0005068,8.10e-07,56;UBERON:0006241,8.10e-07,56;UBERON:0007135,8.10e-07,56;UBERON:0005423,8.36e-07,581 | |||
|phase1_expression=144.070954761551,75.791585457408,238.212942922191,74.0542407813165,208.730831097543,71.5317589762302,65.8579683237607,34.1128731650489,55.1101675501659,0,0,6.11635841964482,7.12170841216825,27.8474294160105,30.4885585669683,13.4465029290355,16.8754467846714,17.527442169297,15.1259167625057,0.123121058076788,0.612002073732759,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,1.85779347979291,0,2.10844143144775,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,78.0181972204677,22.13312837022,17.6450335344072,27.469375581227,20.5548543360715,16.9470427184164,42.1501551937083,8.27279279514481,0.472674085820339,0.221729397462564,0.087834785693126,15.3245518332324,1.82147644146271,1.48313777113772,0,0,0,0,0,0,26.6341625871385,18.0649264972286,20.4812895948481,21.4817017931124,15.1019797035566,8.80377734208216,12.7486929587454,14.9881720318211,14.5864167701551,30.7942963743497,22.1556124410031,12.9246257972147,21.7215231217871,11.7652185710678,17.012980905517,48.7576516431076,31.4341121676638,26.4636979135807,6.13266549863533,10.4419222552494,8.79368370865955,0,0,4.79703457356788,10.4364109856017,10.8902240031539,21.4502872917414,28.9704986956302,9.22137793715728,4.48542080113846,6.4049397437823,0.98667019366864,111.413550673116,11.4504071259235,18.7981188580478,92.3280308634082,59.9222961459199,6.09235722767871,12.1742429963825,9.69802096625564,12.4042404857995,11.2737118698014,10.6836143282967,8.56749920883716,40.0142175659591,8.96690516375906,40.6070320020758,33.2640800038975,10.3852110296994,10.0117749813183,3.59309070908119,30.3005005117319,16.3905261032273,42.39080966908,14.0472838681868,6.74273150757843,14.1223775372201,5.44474479168101,8.9694817844431,11.9592137738398,7.84148034290379,12.9039171316293,27.3089202481863,9.79034052173391,6.51408997160564,11.1392379279236,7.3077753870899,13.6314238091822,25.1296223293477,31.0360429092119,3.55009592516614,2.21654616100809,1.86516651541536,8.69673839234836,10.3643525824517,7.4569194801141,0,0,0,0.10366105501537,0,0,10.9514672630871,20.5837100221723,4.14404764057442,89.623010110172,69.3004302402802,0.118306800039844,0,0,0,0,0,0,0,0,7.38155454624648,5.60967095213783,17.2861084759188,19.1111324801205,0,0,2.95394953340702,0,0.368965315629341,0.514703430895577,3.29250856225877,0,0,5.74048359982883,4.23550796903422,1.03993478527958,1.44331342025273,0,5.63561732331944,17.0352408358067,10.1856812766854,15.7910946354717,0,0,0,0,0,8.43604505880993,10.5828740765282,5.81277898693785,1.43293636324557,1.16253575405585,0.383382679165211,0,0,0.414656231081544,0.432359860250884,1.38866676769018,0.190493682876507,0,0,3.4214489204541,0.308482478109971,0,0,11.5495016875722,6.5394010324992,12.5408468753825,17.9687684903311,103.720369297046,5.917119267892,3.19125739901845,3.12022310734098,4.62973273671856,0,4.26275486425759,74.634512689553,42.867106825924,4.93944202068461,7.16619605446217,47.2671291827586,1.58390374586686,24.1151501647669,18.3022026306062,20.994328148232,0,0,0,2.87549826589899,0,7.13184525203592,11.5825045334063,11.0957214177207,17.18985247103,0,0,0,0,0,0,0,0,0,0,0,0,22.6979259680409,30.5104017846403,9.76554085319048,1.24782516918484,4.10386674233472,4.25796520591624,11.4798586692859,34.30785536896,9.09630016223939,24.8335371102012,4.64957918974806,2.58116835958384,26.8470368706376,14.0976833373173,10.9805895619474,0,0,0,3.33440328590885,11.6504807657348,6.65258645325297,116.610669674825,39.286265161744,40.4150535983626,109.430833464369,55.264382899204,36.6746940207425,44.5254199334973,8.94416224055402,9.05564799096948,20.3675346914247,14.0198695879578,11.272406710616,0.120859449591622,7.81975234182811,0.0920809889358963,1.37777337797528,4.55227920016793,2.36023946926963,0,0.231046011313244,0,0,0,5.68666920354483,4.76262374774244,4.96606607034921,15.4227252690289,0.541892875087706,1.00337954770971,0,0.831076008928724,0.223874754722178,0,0,0,0.656029291399411,0.650756789328606,56.5695153945995,1.83138929636687,1.81520899825294,9.18824860793876,3.25030123018261,8.03419649220798,7.15363315361703,11.3995976664837,15.350367472613,6.753992051742,76.8054750808156,27.263138455875,7.49994321261688,14.0670616321845,1.65284915360978,2.30628080838127,8.55005173713714,0.4046311234222,15.8047486761077,13.5369309137175,6.2733354314454,12.6293767872196,5.32306030317022,5.21959795245044,13.5286679945862,4.00749682877575,19.3522352067027,9.17500331684305,18.491128810611,5.11795582622668,15.4058035692211,4.13664222303718,7.8494864019923,23.0236745706643,22.2374994086204,9.66061699234629,4.24583211303964,3.17020642346017,7.16139375606268,6.82687234725426,16.3288038052961,4.22600587027022,2.45699840534374,16.4030301066307,5.65040583101214,7.16774946609961,15.2590964305481,10.9612721313441,16.7844904937339,35.4183166105182,2.63783490051515,2.78841148289775,2.25356482025793,8.89150383665119,11.3968887575221,1.78335525740625,8.15950447362375,42.0104194242352,72.7741713441383,6.45104395401716,9.79817216685952,2.79044126903985,4.69211592875051,4.3556393944529,54.5092606497551,3.01353760869861,3.36942951335251,1.33029046061003,4.13502120372527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,133.175934958152,0,0,0.284136146806413,26.2618933211459,39.1993378699083,71.8756042912203,4.97073823883149,13.6449333918197,19.3677146739856,0,0,25.9022384726391,6.90709788827869,0,0,0,2.79935628895627,0,0,0,26.9296497388829,0,41.1206863535157,7.75466196876175,17.0693300617806,0,0,0,52.1999694313051,0.568967241427498,0.508507300585533,0.709163045303809,0,0,0,8.85741385813839,7.5975756334007,1.52581736317083,5.41838373663001,3.84211904639612,7.45910350323507,0,0.139423744278603,23.8545801361771,0.113942055847001,0.69169171316418,1.07709173291727,0.217294743844016,27.4340997369451,13.9228341970831,45.307955961584,0,1.56980256395025,0,0,0,0,0,0,0,19.4247041709386,0,0,4.97630965539252,21.6721033033181,13.4426631885398,0,0,0.104421949505455,45.7653692938797,10.4335094148843,13.821602297795,0,0,0,8.2862724598372,6.04953580243319,0.61214552326098,20.5356383792586,0,0.103688191397247,0,0,0,0,0,3.74421617135474,3.29763502836749,0.685946781900644,1.65412492502765,17.472666824203,0.343972064943233,0,0,0,26.8659575672922,0,19.2083629663453,0.137041924646751,0.19871461170299,15.5744558051462,0,1.12222348352147,19.8511285107598,0,0,0,0,0,0,0,0.271808412147228,0.523014231561666,0.101998217636322,0.866851769704557,15.6109275064545,43.2620997298698,0,3.0083580899397,0,43.0094897959272,40.561395050068,3.58936512288407,3.79390100948083,7.2968428183217,13.8366303613961,22.5064632830533,9.00749708856009,0,0,0,0,0,0,6.36183751847443,20.8391211350711,0,0,0,0,0,10.9956697551025,0,6.93490224232944,5.5077317541748,0.422401346077626,0,0,25.7290317494412,10.5934715258469,0,13.0319904420891,3.45688596480507,12.736907044267,9.578415324999,0,13.4606537210483,0,4.68967147769864,1.32506888912221,11.2476172034549,20.6282858718596,0,4.9337051562167,54.3547929969566,66.811829667358,36.4530368705532,4.96166021811951,0,0,1.27668251554036,94.115079982919,138.38082150053,145.820494539408,160.001843786385,0,1.77213635993397,8.90791733784331,19.6549761209205,14.9086390879419,26.7339014203814,17.4490892265287,1.10678907948985,0.249960815924213,0,0,0,0,0,21.1941820099361,25.2410374635002,37.1719927206751,49.4341843767983,24.4020864699998,48.9396171878095,20.1379260189293,17.089094385246,21.1394592792581,15.5247907489116,15.4517864148791,17.092518262217,13.6631402051108,12.8558924430665,12.7604022987838,4.69570555630561,10.2175174118109,12.1857667894015,14.6473463953678,14.3660440770022,13.855961858481,8.35260767781289,3.98095888698616,2.00013882331577,33.6527791079137,23.9092137023803,0,0.770479321629213,3.21662387062389,0,0.226705925512272,4.16740453782901,0,0,0.308801447160972,1.75427239662966,0.530067437837643,0,3.04096393175531,0,0,0.303859956177382,26.1308444326771,0,0,0,0.655219697692825,3.19504781379835,0,0,0,0,0,2.94569520402945,0.139879507719444,1.86623178009892,0,0,0,0,4.07358071889661,0,0,0,5.72407831176153,0,0,3.52675943690684,6.4311550244172,19.6541428795166,7.08482881627925,26.33958674443,9.84558548355624,0,10.2352733647042,14.5328081068666,27.1261898492393,0.196295437002051,0,1.10057159113007,0,2.288292572803,0,0,26.0979839371923,0,7.81514011233093,6.28576066755414,0,0,14.2504303544813,12.4972495778216,25.4224759696456,18.5174165766208,0.546974809018219,4.93431990171464,18.8560247787932,0,0.255524855279191,2.14280734351315,8.4070930554706,1.82089681270989,2.04895972216168,19.4258190656179,0,0.342976018874837,18.4877673696982,11.9048720148757,0,0.111231401892069,23.2339554837521,6.12750800672407,0,2.73947616152849,0.863710364874486,0,7.93389640360885,0,2.55731135809876,1.21700790611806,4.81026818838152,9.32472738733666,15.5353814155494,11.0601545890255,6.02318302348389,0.354996002191696,0.426067023795788,7.19757985324579,2.2910686854405,0.93061915699296,0.955538938977433,0.111855431797792,0,0,13.5960055809458,10.7795947199059,6.95888658802919,24.285549652957,0,0,0,0,0,0,6.40545512295941,0.874238242015829,0,19.1215690968046,0,19.2382297772646,22.5755264248585,5.4945244585842,5.77752189938577,2.25561403151649,2.96506284678455,0,1.78553938605658,0.352894871715692,0,3.65168194123259,1.83491713361816,40.9951207813151,0.157771562193185,11.8985107834101,0.872701380680755,6.34832208618481,30.1315964715069,48.0662653776675,57.9719593245877,0,0,0.126698501011437,0,0,0,0,31.4481597605694,7.77095977452918,17.4125582286344,44.9933531999244,23.6689719910089,10.4748349844046,0.645889098360061,4.77975300078106,0.448527450322454,14.6388464039779,5.45716410187192,13.2807216217146,10.951465634729,4.44523549896278,30.9839927296362,24.949526740951,0.162806537221949,0.426909383510862,1.9307228228694,0,75.0851015691054,38.2615720292372,1.62758471326295,53.9262987090265,28.3796048963347,0 | |||
|short_description=p1@SH3D19 | |||
}} |
Latest revision as of 02:37, 16 September 2015
Short description: | p1@SH3D19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SH3D19_5end |
Coexpression cluster: | C2779_Adipocyte_mature_adipose_Preadipocyte_Fibroblast_Mesenchymal_Hair |
Association with transcript: | 0bp_to_ENST00000514013_5end |
EntrezGene: | SH3D19 |
HGNC: | 30418 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.18e-14 | 76 |
fat cell | 7.77e-12 | 15 |
mesodermal cell | 9.99e-12 | 121 |
muscle precursor cell | 6.19e-11 | 58 |
myoblast | 6.19e-11 | 58 |
multi-potent skeletal muscle stem cell | 6.19e-11 | 58 |
muscle cell | 3.09e-10 | 55 |
endothelial cell of vascular tree | 8.74e-09 | 24 |
electrically responsive cell | 1.48e-07 | 61 |
electrically active cell | 1.48e-07 | 61 |
smooth muscle cell | 4.02e-07 | 43 |
smooth muscle myoblast | 4.02e-07 | 43 |
blood vessel endothelial cell | 5.51e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.51e-07 | 18 |