FFCP PHASE1:Hg19::chr4:48485413..48485423,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=201780 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22980 | |||
|TSSclassifier=strong | |||
|UniProt=Q96EP9 | |||
|association_with_transcript=53bp_to_ENST00000273861,NM_152679,uc003gyc.2_5end | |||
|cluster_id=chr4:48485413..48485423,+ | |||
|coexpression_cluster_id=C135 | |||
|description=CAGE_peak_5_at_SLC10A4_5end | |||
|id=chr4:48485413..48485423,+ | |||
|ontology_enrichment_celltype=CL:0002605!6.59e-12!3 | |||
|ontology_enrichment_celltype_v019=CL:0000333;9.08e-24;5!CL:0000047;1.54e-15;2!CL:0002321;1.31e-08;15 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.09e-10;3!UBERON:0003057;1.09e-10;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;5.35e-20;6!DOID:171;2.00e-12;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,4.86e-20,6;DOID:171,1.89e-12,10 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.94e-40!57;UBERON:0005068!4.94e-40!57;UBERON:0006241!4.94e-40!57;UBERON:0007135!4.94e-40!57;UBERON:0002020!4.27e-34!34;UBERON:0003528!4.27e-34!34;UBERON:0002780!1.74e-33!41;UBERON:0001890!1.74e-33!41;UBERON:0006240!1.74e-33!41;UBERON:0003080!1.40e-32!42;UBERON:0002616!2.89e-32!59;UBERON:0000073!1.16e-31!94;UBERON:0001016!1.16e-31!94;UBERON:0002791!6.52e-31!33;UBERON:0001893!6.72e-30!34;UBERON:0003075!1.33e-28!86;UBERON:0007284!1.33e-28!86;UBERON:0005743!2.12e-28!86;UBERON:0001017!7.65e-28!82;UBERON:0002346!5.05e-27!90;UBERON:0000955!2.81e-26!69;UBERON:0006238!2.81e-26!69;UBERON:0002308!5.87e-26!9;UBERON:0000125!5.87e-26!9;UBERON:0003056!1.51e-25!61;UBERON:0001869!3.54e-25!32;UBERON:0009663!8.94e-19!7;UBERON:0004121!3.34e-18!169;UBERON:0007023!5.23e-18!115;UBERON:0000924!1.35e-17!173;UBERON:0006601!1.35e-17!173;UBERON:0000033!3.44e-16!123;UBERON:0000153!3.89e-15!129;UBERON:0007811!3.89e-15!129;UBERON:0000956!4.12e-15!25;UBERON:0000203!4.12e-15!25;UBERON:0002420!1.85e-14!9;UBERON:0007245!1.85e-14!9;UBERON:0010009!1.85e-14!9;UBERON:0010011!1.85e-14!9;UBERON:0000454!1.85e-14!9;UBERON:0006331!2.48e-12!3;UBERON:0000988!4.54e-12!3;UBERON:0002298!1.49e-11!8;UBERON:0001950!4.07e-10!20;UBERON:0002619!4.03e-09!22;UBERON:0002148!4.19e-09!2;UBERON:0009662!4.19e-09!2;UBERON:0000369!4.37e-09!4;UBERON:0002435!4.37e-09!4;UBERON:0000204!4.37e-09!4;UBERON:0010082!4.37e-09!4;UBERON:0000025!6.81e-09!194;UBERON:0003076!1.15e-08!15;UBERON:0003057!1.15e-08!15;UBERON:0001875!1.55e-08!2;UBERON:0006514!1.55e-08!2;UBERON:0004111!5.99e-08!241;UBERON:0001872!2.80e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;9.08e-24;5!UBERON:0002410;9.08e-24;5!UBERON:0002148;2.37e-15;2!UBERON:0006331;2.37e-15;2!UBERON:0009662;2.37e-15;2!UBERON:0000010;1.08e-13;8!UBERON:0000988;1.09e-10;3!UBERON:0002240;1.09e-10;3!UBERON:0005174;1.09e-10;3!UBERON:0001137;1.09e-10;3!UBERON:0001016;5.83e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,8.09e-24,5;UBERON:0002410,8.09e-24,5;UBERON:0002148,2.74e-15,2;UBERON:0006331,2.74e-15,2;UBERON:0009662,2.74e-15,2;UBERON:0000010,1.02e-13,8;UBERON:0001016,2.56e-11,89;UBERON:0002240,9.90e-11,3;UBERON:0005174,9.90e-11,3;UBERON:0001137,9.90e-11,3;UBERON:0000988,1.20e-10,3;UBERON:0003076,1.78e-08,15;UBERON:0003057,1.78e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.447352215784832,0.500547425135725,0,0.278406173895242,0,2.16364542780786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.794682894901893,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242998226632099,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,1.16354660725395,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248385611765534,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80344509631373,0,11.3578023719694,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0,0.252071696221718,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.0679697329768317,0.328863867814245,0.118193840883968,0,0,0.314231179832004,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0.218559560503957,0,0,0,0.392616934229891,0,1.2679671827502,0,0,0,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p5@SLC10A4 | |||
}} |
Latest revision as of 22:47, 17 September 2015
Short description: | p5@SLC10A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SLC10A4_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | 53bp_to_ENST00000273861, NM_152679, uc003gyc.2_5end |
EntrezGene: | SLC10A4 |
HGNC: | 22980 |
UniProt: | Q96EP9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 8.09e-24 | 5 |
autonomic nervous system | 8.09e-24 | 5 |
locus ceruleus | 2.74e-15 | 2 |
brainstem nucleus | 2.74e-15 | 2 |
hindbrain nucleus | 2.74e-15 | 2 |
peripheral nervous system | 1.02e-13 | 8 |
nervous system | 2.56e-11 | 89 |
spinal cord | 9.90e-11 | 3 |
dorsal region element | 9.90e-11 | 3 |
dorsum | 9.90e-11 | 3 |
pons | 1.20e-10 | 3 |
posterior neural tube | 1.78e-08 | 15 |
chordal neural plate | 1.78e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 4.86e-20 | 6 |
neuroectodermal tumor | 1.89e-12 | 10 |