FFCP PHASE1:Hg19::chr4:57774274..57774299,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5978 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9966 | |||
|TSSclassifier=strong | |||
|UniProt=Q13127 | |||
|association_with_transcript=199bp_to_ENST00000309042_5end | |||
|cluster_id=chr4:57774274..57774299,+ | |||
|description=CAGE_peak_8_at_REST_5end | |||
|id=chr4:57774274..57774299,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000097;4.89e-18;5!CL:0000775;1.55e-17;3!CL:0000047;3.94e-12;2!CL:0000163;4.45e-10;9!CL:0000039;1.17e-07;7!CL:0000586;1.17e-07;7!CL:0000094;7.36e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,2.43e-18,5;CL:0002028,2.43e-18,5;CL:0000775,1.28e-17,3;CL:0000163,3.05e-10,9;CL:0000766,3.79e-10,72;CL:0000039,9.99e-08,7;CL:0000586,9.99e-08,7;CL:0000094,6.88e-07,8;CL:0000511,7.82e-07,1;CL:0002625,7.82e-07,1;CL:0000216,7.82e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003101!3.35e-07!22;UBERON:0000079!3.35e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;1.95e-12;11!UBERON:0000473;2.17e-11;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,1.57e-12,11;UBERON:0000473,1.29e-11,8;UBERON:0002405,3.14e-07,93;UBERON:0001831,6.99e-07,1;UBERON:0001567,6.99e-07,1;UBERON:0008801,6.99e-07,1;UBERON:0001136,7.82e-07,1;UBERON:0001343,7.82e-07,1;UBERON:0004910,7.82e-07,1;UBERON:0005154,7.82e-07,1;UBERON:0005295,7.82e-07,1;UBERON:0004813,7.82e-07,1;UBERON:0005297,7.82e-07,1;UBERON:0005294,7.82e-07,1;UBERON:0010141,7.82e-07,1;UBERON:0005891,7.82e-07,1 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.704772020479856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0.123121058076788,0,0,0.286235987131057,0,0.251085279189606,0.305653622991805,0,0.0787107813136792,0,0,0.154816123316076,0.919421224478927,0,0,0.0774672005803016,0,0,0,0.401088894940283,0,0.223915474239924,1.29557466407592,0.515151135268373,1.01778767145695,1.88937971844405,0.727752183563449,0.232429036905685,0,0.619412741790207,0.28769239232215,0,0.47296445977717,0,0,0,1.50593871634084,0.818718450173537,0,1.53041946185451,0.962787081228281,2.55734850319616,0.989553900560148,0.598390972864896,0,0.290209238628584,0,0,0,0,0.217188844705117,0,0,0,0,0.212604299965044,0,0.22465726229299,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0.196709770113833,0,0.411202997999018,0,0,0,0,0.222820913770347,0,0.221533894583621,0.541607727530031,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0.383220493601921,0,0,0,0,0,0,0,0,0.236777252044017,0,0.201606743224732,0.267440195783507,0,0,0,0,0,0,0.144846518960824,0,0,0,0.443458794925128,0,0.261958150995425,0.364295288292542,0,0.324547393654683,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.417989933073621,0.516833518338658,0,0.33472061276467,0,0,0.488124115096339,0.367663080345869,0,0.446498641420399,0,0,0,0,0,0,0,0,0,0.379891534993739,0.132409180813219,0.573673241497627,0.354668382198357,0,0,0,0.622422070799533,0.269421344139376,0,0.151357427644931,1.15235184896,0,0,0,0,0,0.161872944368132,0,0,0,0,1.18800285728205,1.23633464639278,0,0,0,0,0.277064115484183,0.438977620880838,0,0.600952235626387,0.113432183160021,0,0,0.423863802319124,0,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0,0.184099797284599,0.161646056818812,0,0.10075209822764,0.169560592310488,0,0,0.860413786167011,0.609868530647977,0.397589304964456,0.116193942869518,0.414644220061482,0.252320850875628,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0,0,0,0,0,0,0.738155454624648,0,0.4115740113314,0,0,0,0.590789906681404,0,0.122988438543114,0,0.329250856225877,0,0.201057944823262,0,0,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0.16798212819886,0,0,0,0,0,1.76096868026452,1.65862492432618,2.01767934783746,2.39860623510122,0.063497894292169,0,0,0,0.102827492703324,0,0.571652865261156,0,0,0,0.129271715757778,0,0,0.797814349754612,2.08014873822732,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0.479249710983165,0,0,0,0.205476322550383,0.179060963239896,0.336255431980582,0.197030760201927,0.215627574859517,0,1.01637849688985,2.60279707715243,0,0,0,1.49801404789436,2.99161459204025,2.07207756718018,0.12269149171914,0,0,0.207970861530807,0,0,0,0,0,0,0,0.184369168541703,0.347534457872331,0,0.343143423810856,0.206768026122887,0,0,0,0,0,0.496215615637554,0.153461973288062,0,0.384417447767103,0,0.160853921143607,0,0,0.355123450626254,0.164254312027618,0.519254429183621,0,0.966875596732978,0.802025881213139,0.184161977871793,0,0,0.786746489756545,0,0.308061348417659,0.784349769176855,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0.183138929636687,0.082509499920588,0,0,1.6068392984416,0.386682873168488,0,0.15350367472613,0,0.214840489736547,0,0,0.178064071293475,0.826424576804891,0.192190067365106,0,0.2023155617111,0,0,0,0,0.532306030317022,0,0.18532421910392,0.715624433709956,0.372158369359667,0.632758849437452,0,0,0.42793898803392,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0.136499911407986,0.424216295861138,0,1.10273068709225,0,0,0,0,0.405820753925408,0,0,0.143411352204052,0,0,0,0,0,0,0,0.192444225451024,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0.28853842595289,0.0711418433484141,0,0,0.383010740264733,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0.223676107892416,0.166849141711909,0,0,0,0.270455678475983,0,0,0,1.61158997199083,0,0.111443384277478,0.284136146806413,0,0.890894042497916,0,0,0,0.556543525114529,0.16480387422676,0,0.19924798825107,0.828851746593443,0,0.306806047506464,0.246169610922139,0,0.359473404589307,0.179021174675609,0,0.197286811273867,0,0,0,0,0,0,0.0874599999961957,2.89999830173917,0,0,0,0,0,0.173624994933292,0,0,0,0.110579259931225,0,0,0.21787692703798,0,1.07730361905316,0.113942055847001,0.23056390438806,1.16684937732704,0,0,1.55715908783166,0,0,0.156980256395025,0.166211681900156,0,0,0,0,0.317873157960757,0,0,0.141353071433941,0,0,0.619202951523374,0,0,0,0,0.134802265961354,0.802577647298789,0.234264445725339,0,0.19566461893209,0,0,0,0,0.126373159256976,0.300646838828985,0.103688191397247,0,0,0.313932918407225,0,0,0.138674673013139,0,0.0979923974143777,0.0870592065804026,1.04836000945218,0.343972064943233,0,0,0,0.678923115418936,0.882561266915003,0,0,0,0,0,0.0801588202515337,0.213452994739353,0,0.144090417154106,0.343609788497747,0,0.14405479798815,0,0,0,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0.229160424011684,0.717873024576814,0,0,0.223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| |||
|short_description=p8@REST | |||
}} |
Latest revision as of 03:13, 18 September 2015
Short description: | p8@REST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_REST_5end |
Coexpression cluster: | NA |
Association with transcript: | 199bp_to_ENST00000309042_5end |
EntrezGene: | REST |
HGNC: | 9966 |
UniProt: | Q13127 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 2.43e-18 | 5 |
basophil mast progenitor cell | 2.43e-18 | 5 |
neutrophil | 1.28e-17 | 3 |
endocrine cell | 3.05e-10 | 9 |
myeloid leukocyte | 3.79e-10 | 72 |
germ line cell | 9.99e-08 | 7 |
germ cell | 9.99e-08 | 7 |
granulocyte | 6.88e-07 | 8 |
androgen binding protein secreting cell | 7.82e-07 | 1 |
seminiferous tubule epithelial cell | 7.82e-07 | 1 |
Sertoli cell | 7.82e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 1.57e-12 | 11 |
testis | 1.29e-11 | 8 |
immune system | 3.14e-07 | 93 |
parotid gland | 6.99e-07 | 1 |
cheek | 6.99e-07 | 1 |
parotid gland primordium | 6.99e-07 | 1 |
mesothelium | 7.82e-07 | 1 |
seminiferous tubule of testis | 7.82e-07 | 1 |
epithelium of male gonad | 7.82e-07 | 1 |
epithelial cord | 7.82e-07 | 1 |
sex cord | 7.82e-07 | 1 |
seminiferous tubule epithelium | 7.82e-07 | 1 |
testis sex cord | 7.82e-07 | 1 |
genital ridge | 7.82e-07 | 1 |
primitive sex cord of indifferent gonad | 7.82e-07 | 1 |
coelomic epithelium | 7.82e-07 | 1 |