FFCP PHASE1:Hg19::chrX:135730297..135730350,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:135730297..135730350,+
|short_description=p1@CD40LG
|description=CAGE_peak_1_at_CD40LG_5end
|association_with_transcript=0bp_to_NM_000074,uc004faa.2,uc010n...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=959 | |EntrezGene=959 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11935 | |HGNC=11935 | ||
|TSSclassifier=strong | |||
|UniProt=P29965 | |UniProt=P29965 | ||
|association_with_transcript=0bp_to_NM_000074,uc004faa.2,uc010nsd.2_5end | |||
|cluster_id=chrX:135730297..135730350,+ | |||
|coexpression_cluster_id=C300 | |||
|description=CAGE_peak_1_at_CD40LG_5end | |||
|id=chrX:135730297..135730350,+ | |||
|ontology_enrichment_celltype=CL:0000791!2.00e-20!18;CL:0000789!2.00e-20!18;CL:0002420!2.00e-20!18;CL:0002419!2.00e-20!18;CL:0000790!2.00e-20!18;CL:0000084!8.29e-18!25;CL:0000827!8.29e-18!25;CL:0000738!4.97e-17!140;CL:0000037!2.47e-15!172;CL:0000566!2.47e-15!172;CL:0000988!2.81e-13!182;CL:0000625!4.31e-13!11;CL:0002032!9.43e-13!165;CL:0000837!9.43e-13!165;CL:0002087!2.73e-12!119;CL:0002031!3.93e-11!124;CL:0000838!1.45e-09!52;CL:0000542!3.18e-09!53;CL:0000051!3.18e-09!53;CL:0000624!4.28e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.73e-30;18!CL:0000789;3.73e-30;18!CL:0002419;3.73e-30;18!CL:0000084;5.07e-25;25!CL:0000625;4.92e-19;11!CL:0000624;1.84e-11;6!CL:0000542;1.84e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.36e-30,18;CL:0000789,3.36e-30,18;CL:0002420,3.36e-30,18;CL:0002419,3.36e-30,18;CL:0000790,3.36e-30,18;CL:0000084,4.87e-25,25;CL:0000827,4.87e-25,25;CL:0000625,4.78e-19,11;CL:0000838,1.07e-13,52;CL:0000542,2.65e-13,53;CL:0000051,2.65e-13,53;CL:0000738,3.91e-13,136;CL:0000624,1.80e-11,6;CL:0000037,7.77e-11,168;CL:0002087,5.40e-10,115;CL:0000988,1.16e-09,177;CL:0002032,4.90e-09,161;CL:0000837,4.90e-09,161;CL:0002031,4.68e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;3.73e-30;18!CL:0000051;1.84e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.39e-32!115;UBERON:0000178!1.25e-10!15;UBERON:0000179!1.25e-10!15;UBERON:0000463!1.25e-10!15;UBERON:0002390!2.69e-09!102;UBERON:0003061!2.69e-09!102;UBERON:0002193!1.15e-08!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.36e-16;15!UBERON:0000179;4.36e-16;15!UBERON:0000463;4.36e-16;15!UBERON:0002390;3.84e-10;32!UBERON:0002193;5.23e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.54e-16,15;UBERON:0000179,4.54e-16,15;UBERON:0000463,4.54e-16,15;UBERON:0007023,1.60e-13,114;UBERON:0004177,5.80e-09,7;UBERON:0005057,5.80e-09,7;UBERON:0002370,7.99e-08,4;UBERON:0005058,7.99e-08,4;UBERON:0009113,7.99e-08,4;UBERON:0003295,7.99e-08,4;UBERON:0005562,7.99e-08,4;UBERON:0003408,1.03e-07,10 | |||
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| ||
|short_description=p1@CD40LG | |||
}} | }} |
Latest revision as of 14:58, 19 September 2015
Short description: | p1@CD40LG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CD40LG_5end |
Coexpression cluster: | C300_CD4_CD8_NK_Natural_blood_mycosis_Basophils |
Association with transcript: | 0bp_to_NM_000074, uc004faa.2, uc010nsd.2_5end |
EntrezGene: | CD40LG |
HGNC: | 11935 |
UniProt: | P29965 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.36e-30 | 18 |
alpha-beta T cell | 3.36e-30 | 18 |
immature T cell | 3.36e-30 | 18 |
mature T cell | 3.36e-30 | 18 |
immature alpha-beta T cell | 3.36e-30 | 18 |
T cell | 4.87e-25 | 25 |
pro-T cell | 4.87e-25 | 25 |
CD8-positive, alpha-beta T cell | 4.78e-19 | 11 |
lymphoid lineage restricted progenitor cell | 1.07e-13 | 52 |
lymphocyte | 2.65e-13 | 53 |
common lymphoid progenitor | 2.65e-13 | 53 |
leukocyte | 3.91e-13 | 136 |
CD4-positive, alpha-beta T cell | 1.80e-11 | 6 |
hematopoietic stem cell | 7.77e-11 | 168 |
nongranular leukocyte | 5.40e-10 | 115 |
hematopoietic cell | 1.16e-09 | 177 |
hematopoietic oligopotent progenitor cell | 4.90e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.90e-09 | 161 |
hematopoietic lineage restricted progenitor cell | 4.68e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 4.54e-16 | 15 |
haemolymphatic fluid | 4.54e-16 | 15 |
organism substance | 4.54e-16 | 15 |
adult organism | 1.60e-13 | 114 |
hemopoietic organ | 5.80e-09 | 7 |
immune organ | 5.80e-09 | 7 |
thymus | 7.99e-08 | 4 |
hemolymphoid system gland | 7.99e-08 | 4 |
thymic region | 7.99e-08 | 4 |
pharyngeal gland | 7.99e-08 | 4 |
thymus primordium | 7.99e-08 | 4 |
gland of gut | 1.03e-07 | 10 |