FFCP PHASE1:Hg19::chr7:5568016..5568065,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=60 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=132 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-287bp_to_ENST00000464611_5end | |||
|cluster_id=chr7:5568016..5568065,- | |||
|coexpression_cluster_id=C1999 | |||
|description=CAGE_peak_3_at_ACTB_5end | |||
|id=chr7:5568016..5568065,- | |||
|ontology_enrichment_celltype=CL:0002371!4.91e-21!591;CL:0000144!8.90e-21!625;CL:0000548!9.76e-18!679;CL:0000004!9.76e-18!679;CL:0000255!9.76e-18!679;CL:0000012!8.34e-17!682;CL:0000003!1.73e-12!722;CL:0000723!4.63e-11!436;CL:0000222!6.14e-11!119;CL:0000048!1.00e-10!430;CL:0000055!3.12e-10!180;CL:0000034!5.68e-10!444;CL:0000393!3.27e-09!60;CL:0000211!3.27e-09!60;CL:0000183!4.18e-09!59;CL:0000220!5.50e-09!246;CL:0000192!6.65e-09!42;CL:0000514!6.65e-09!42;CL:0000680!1.04e-08!57;CL:0000056!1.04e-08!57;CL:0000355!1.04e-08!57;CL:0002321!1.05e-08!248;CL:0000187!5.15e-08!54;CL:0000063!1.47e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.45e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,5.00e-11,121;CL:0000723,5.36e-11,433;CL:0000048,1.15e-10,427;CL:0000034,6.54e-10,441;CL:0000393,6.74e-09,61;CL:0000211,6.74e-09,61;CL:0002321,8.10e-09,250;CL:0000192,1.65e-08,43;CL:0000514,1.65e-08,43;CL:0000680,2.13e-08,58;CL:0000056,2.13e-08,58;CL:0000355,2.13e-08,58;CL:0000187,1.03e-07,55;CL:1000449,3.53e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!4.17e-10!143;UBERON:0003081!1.21e-09!216;UBERON:0002204!1.52e-09!167;UBERON:0000914!9.13e-09!83;UBERON:0002329!9.13e-09!83;UBERON:0003077!9.13e-09!83;UBERON:0003059!9.13e-09!83;UBERON:0007282!9.13e-09!83;UBERON:0009618!9.13e-09!83;UBERON:0007285!9.13e-09!83;UBERON:0004290!1.63e-08!70;UBERON:0000486!2.40e-08!82;UBERON:0002385!9.67e-08!63;UBERON:0001015!9.67e-08!63;UBERON:0000383!9.67e-08!63;UBERON:0002049!1.04e-07!79;UBERON:0007798!1.04e-07!79;UBERON:0001134!1.25e-07!61;UBERON:0002036!1.25e-07!61;UBERON:0003082!1.25e-07!61;UBERON:0004876!2.00e-07!20;UBERON:0000080!5.68e-07!18;UBERON:0002120!5.68e-07!18;UBERON:0004875!5.68e-07!18;UBERON:0005721!5.68e-07!18;UBERON:0005754!5.68e-07!18;UBERON:0007297!5.68e-07!18;UBERON:0004535!7.63e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.45e-07;15!UBERON:0004819;3.45e-07;15!UBERON:0001285;3.45e-07;15!UBERON:0007684;3.45e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,3.33e-11,315;UBERON:0004120,3.33e-11,315;UBERON:0006603,3.33e-11,315;UBERON:0007503,7.76e-11,78;UBERON:0002204,2.60e-09,167;UBERON:0003081,2.46e-08,203;UBERON:0002329,3.02e-08,71;UBERON:0003059,3.02e-08,71;UBERON:0007282,3.02e-08,71;UBERON:0004290,3.02e-08,71;UBERON:0009618,3.02e-08,71;UBERON:0000486,4.14e-08,83;UBERON:0007524,4.45e-08,73;UBERON:0003077,6.38e-08,72;UBERON:0007285,6.38e-08,72;UBERON:0005256,7.20e-08,122;UBERON:0002385,1.78e-07,64;UBERON:0001015,1.78e-07,64;UBERON:0000383,1.78e-07,64;UBERON:0002049,2.16e-07,78;UBERON:0007798,2.16e-07,78;UBERON:0001134,2.31e-07,62;UBERON:0002036,2.31e-07,62;UBERON:0003082,2.31e-07,62;UBERON:0004211,3.53e-07,15;UBERON:0009773,3.53e-07,15;UBERON:0001231,3.53e-07,15;UBERON:0001285,3.53e-07,15;UBERON:0007684,3.53e-07,15;UBERON:0004208,3.53e-07,15;UBERON:0006555,5.21e-07,16;UBERON:0004819,5.21e-07,16 | |||
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| |||
|short_description=p3@ACTB | |||
}} |
Latest revision as of 02:00, 19 September 2015
Short description: | p3@ACTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ACTB_5end |
Coexpression cluster: | C1999_Neutrophils_Alveolar_Olfactory_Smooth_Monocytederived_Renal_Dendritic |
Association with transcript: | -287bp_to_ENST00000464611_5end |
EntrezGene: | ACTB |
HGNC: | 132 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 5.00e-11 | 121 |
somatic stem cell | 5.36e-11 | 433 |
multi fate stem cell | 1.15e-10 | 427 |
stem cell | 6.54e-10 | 441 |
electrically responsive cell | 6.74e-09 | 61 |
electrically active cell | 6.74e-09 | 61 |
embryonic cell | 8.10e-09 | 250 |
smooth muscle cell | 1.65e-08 | 43 |
smooth muscle myoblast | 1.65e-08 | 43 |
muscle precursor cell | 2.13e-08 | 58 |
myoblast | 2.13e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.13e-08 | 58 |
muscle cell | 1.03e-07 | 55 |
epithelial cell of nephron | 3.53e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 3.33e-11 | 315 |
mesoderm-derived structure | 3.33e-11 | 315 |
presumptive mesoderm | 3.33e-11 | 315 |
epithelial vesicle | 7.76e-11 | 78 |
musculoskeletal system | 2.60e-09 | 167 |
lateral plate mesoderm | 2.46e-08 | 203 |
somite | 3.02e-08 | 71 |
presomitic mesoderm | 3.02e-08 | 71 |
presumptive segmental plate | 3.02e-08 | 71 |
dermomyotome | 3.02e-08 | 71 |
trunk paraxial mesoderm | 3.02e-08 | 71 |
multilaminar epithelium | 4.14e-08 | 83 |
dense mesenchyme tissue | 4.45e-08 | 73 |
paraxial mesoderm | 6.38e-08 | 72 |
presumptive paraxial mesoderm | 6.38e-08 | 72 |
trunk mesenchyme | 7.20e-08 | 122 |
muscle tissue | 1.78e-07 | 64 |
musculature | 1.78e-07 | 64 |
musculature of body | 1.78e-07 | 64 |
vasculature | 2.16e-07 | 78 |
vascular system | 2.16e-07 | 78 |
skeletal muscle tissue | 2.31e-07 | 62 |
striated muscle tissue | 2.31e-07 | 62 |
myotome | 2.31e-07 | 62 |
nephron epithelium | 3.53e-07 | 15 |
renal tubule | 3.53e-07 | 15 |
nephron tubule | 3.53e-07 | 15 |
nephron | 3.53e-07 | 15 |
uriniferous tubule | 3.53e-07 | 15 |
nephrogenic mesenchyme | 3.53e-07 | 15 |
excretory tube | 5.21e-07 | 16 |
kidney epithelium | 5.21e-07 | 16 |