FFCP PHASE1:Mm9::chr4:109149213..109149270,-: Difference between revisions
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{{FFCP|EntrezGene=29864|HGNC=|MCL_coexpression_id=1|UniProt=Q9QYK7|association_with_transcript=9bp_to_ENSMUST00000030284_5end|description=CAGE_peak_1_at_Rnf11_5end|id=chr4:109149213..109149270,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004111!1.12e-16!122;UBERON:0000025!6.09e-15!114;UBERON:0004121!1.72e-10!102;UBERON:0000924!1.72e-10!102;UBERON:0006601!1.72e-10!102;UBERON:0000033!1.52e-09!63;UBERON:0000955!2.65e-09!50;UBERON:0006238!2.65e-09!50;UBERON:0001049!4.67e-09!52;UBERON:0005068!4.67e-09!52;UBERON:0006241!4.67e-09!52;UBERON:0007135!4.67e-09!52;UBERON:0002616!6.90e-09!49;UBERON:0000475!1.34e-08!200;UBERON:0002346!4.21e-08!71;UBERON:0003075!4.21e-08!71;UBERON:0007284!4.21e-08!71;UBERON:0001017!1.00e-07!73;UBERON:0005743!1.00e-07!73;UBERON:0000073!2.48e-07!75;UBERON:0001016!2.48e-07!75;UBERON:0002021!3.49e-07!10;UBERON:0000411!3.49e-07!10;UBERON:0001950!3.49e-07!10;UBERON:0005256!5.29e-07!47|ontology_enrichment_uberon_v019_2=UBERON:0004111,1.12e-16,122;UBERON:0000025,6.09e-15,114;UBERON:0000073,3.69e-10,54;UBERON:0010314,4.61e-10,92;UBERON:0004121,3.18e-09,95;UBERON:0000924,3.18e-09,95;UBERON:0006601,3.18e-09,95;UBERON:0001049,4.67e-09,52;UBERON:0005068,4.67e-09,52;UBERON:0006241,4.67e-09,52;UBERON:0007135,4.67e-09,52;UBERON:0010371,8.11e-09,73;UBERON:0000955,8.58e-08,47;UBERON:0006238,8.58e-08,47;UBERON:0001017,1.00e-07,73;UBERON:0002616,2.11e-07,46;UBERON:0001016,2.48e-07,75;UBERON:0002021,3.49e-07,10;UBERON:0000411,3.49e-07,10;UBERON:0001950,3.49e-07,10;UBERON:0002346,5.77e-07,64;UBERON:0003075,5.77e-07,64;UBERON:0007284,5.77e-07,64|phase1_expression=51.4077799206389,35.9444669868542,42.7699285026164,19.3577095236371,27.5492651470491,26.5249249620786,17.7545606852599,7.10178278928669,17.1762241025033,14.2779361056416,6.8487187290202,5.34473465268754,3.42401459862411,2.53519167015092,21.3190247562024,33.2059438519315,25.1842276126133,6.30924330716475,8.08975158273859,10.1853516431527,33.8472294801258,7.84398514486994,6.00759515019551,18.5591210440352,19.2703796096423,41.9189333803965,37.9070556619986,34.4753972297422,6.27077284206034,8.56902441183765,15.9645967671819,10.1604907753541,5.53558308826113,47.5445043046316,7.79899373328441,9.14290549471708,8.98345167554424,57.3388334109564,33.5974198145234,26.6997109426637,88.8229546926832,88.7959130445979,54.3771595394892,20.8988717839458,20.5795170375615,15.9685674380663,19.559783608701,15.6978112593922,35.1497892375155,27.9979054666968,13.0187372111587,11.5002051491977,7.3824346665404,7.25362142011344,9.41062637598899,48.364773974758,34.6705462325896,43.3164557513052,38.4401275633236,40.2033144246745,27.2547503507657,18.9752937958714,17.7858959222228,15.2982951937838,17.7995945262055,18.4724829885986,37.4500138148006,30.3532461204028,24.8855069540346,18.765825428105,18.2982716375702,49.7032712862618,51.2415015007743,17.8836566853833,15.7186572469908,16.5459381589804,78.182275509566,83.6352064457979,77.4176927611467,31.6527090552465,26.2569537138916,30.2129754922921,70.9124817463508,59.6528366633581,67.8424220129037,48.9083451886288,40.5759290277443,33.5519002485541,19.0072745266292,25.014186395346,34.7837386442013,42.1607699720879,75.4768180415603,46.9541776724901,36.3874793770695,31.8099089839108,40.728881838208,29.9957367737382,36.3700406444016,26.5004680882755,36.6192891419369,14.115912515575,15.2883143823987,7.11066703153331,24.8964697162896,24.0691872201344,27.8038444758131,39.8501740219519,4.40194402200192,55.8142442883741,18.3894446372104,32.273340701087,40.1270965225542,50.7935298662338,45.0364748329749,51.6489690364966,37.5736350956248,36.005239873058,58.3842964286917,32.8386705393241,41.0765224336332,34.4261429726008,26.0948465705371,52.4077626650669,58.435631200954,15.5828803677241,8.14742846640258,4.79922184794726,9.14905634926066,77.741341851103,68.1675898199753,28.0209205211688,83.9571466528695,88.4775482362944,84.7775221803005,66.6811591208484,27.2929495118848,36.9488702711976,43.468314450592,48.1911849980025,14.8337304977482,22.0706020256134,21.7875177064473,23.6606564002073,27.0785266622285,28.953700784376,30.1719553082327,38.8055056108524,14.0119195406347,12.1027891307404,16.1875034230833,20.8235945806196,22.5218271872734,43.5315208152708,49.7992770107223,16.1217756122979,4.21327912387941,4.37491442095016,6.81992398549422,19.6769483908727,20.1692411583743,24.668502420159,29.1196024769809,24.0052362731833,27.3052789810659,29.9968788728026,26.0225199357631,25.5716099784101,31.1018116336478,46.623559798463,50.6680059661598,53.5091953976716,48.5205754793222,51.9378840602639,62.4561147235458,27.9900545671654,20.1555457620117,9.25576983322405,13.8637362847902,13.4697269679054,14.6908905907186,13.5127961497639,20.0140239460383,22.6368495073945,21.8283368310475,24.0460473897056,29.1548842208313,27.2570366696377,26.7100799353195,8.08937467788799,18.371734239349,19.1175622324193,20.6738012038859,15.0808036644842,9.01661885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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=29864 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9QYK7 | |||
|association_with_transcript=9bp_to_ENSMUST00000030284_5end | |||
|cluster_id=chr4:109149213..109149270,- | |||
|description=CAGE_peak_1_at_Rnf11_5end | |||
|id=chr4:109149213..109149270,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!1.12e-16!122;UBERON:0000025!6.09e-15!114;UBERON:0004121!1.72e-10!102;UBERON:0000924!1.72e-10!102;UBERON:0006601!1.72e-10!102;UBERON:0000033!1.52e-09!63;UBERON:0000955!2.65e-09!50;UBERON:0006238!2.65e-09!50;UBERON:0001049!4.67e-09!52;UBERON:0005068!4.67e-09!52;UBERON:0006241!4.67e-09!52;UBERON:0007135!4.67e-09!52;UBERON:0002616!6.90e-09!49;UBERON:0000475!1.34e-08!200;UBERON:0002346!4.21e-08!71;UBERON:0003075!4.21e-08!71;UBERON:0007284!4.21e-08!71;UBERON:0001017!1.00e-07!73;UBERON:0005743!1.00e-07!73;UBERON:0000073!2.48e-07!75;UBERON:0001016!2.48e-07!75;UBERON:0002021!3.49e-07!10;UBERON:0000411!3.49e-07!10;UBERON:0001950!3.49e-07!10;UBERON:0005256!5.29e-07!47 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,1.12e-16,122;UBERON:0000025,6.09e-15,114;UBERON:0000073,3.69e-10,54;UBERON:0010314,4.61e-10,92;UBERON:0004121,3.18e-09,95;UBERON:0000924,3.18e-09,95;UBERON:0006601,3.18e-09,95;UBERON:0001049,4.67e-09,52;UBERON:0005068,4.67e-09,52;UBERON:0006241,4.67e-09,52;UBERON:0007135,4.67e-09,52;UBERON:0010371,8.11e-09,73;UBERON:0000955,8.58e-08,47;UBERON:0006238,8.58e-08,47;UBERON:0001017,1.00e-07,73;UBERON:0002616,2.11e-07,46;UBERON:0001016,2.48e-07,75;UBERON:0002021,3.49e-07,10;UBERON:0000411,3.49e-07,10;UBERON:0001950,3.49e-07,10;UBERON:0002346,5.77e-07,64;UBERON:0003075,5.77e-07,64;UBERON:0007284,5.77e-07,64 | |||
|phase1_expression=51.4077799206389,35.9444669868542,42.7699285026164,19.3577095236371,27.5492651470491,26.5249249620786,17.7545606852599,7.10178278928669,17.1762241025033,14.2779361056416,6.8487187290202,5.34473465268754,3.42401459862411,2.53519167015092,21.3190247562024,33.2059438519315,25.1842276126133,6.30924330716475,8.08975158273859,10.1853516431527,33.8472294801258,7.84398514486994,6.00759515019551,18.5591210440352,19.2703796096423,41.9189333803965,37.9070556619986,34.4753972297422,6.27077284206034,8.56902441183765,15.9645967671819,10.1604907753541,5.53558308826113,47.5445043046316,7.79899373328441,9.14290549471708,8.98345167554424,57.3388334109564,33.5974198145234,26.6997109426637,88.8229546926832,88.7959130445979,54.3771595394892,20.8988717839458,20.5795170375615,15.9685674380663,19.559783608701,15.6978112593922,35.1497892375155,27.9979054666968,13.0187372111587,11.5002051491977,7.3824346665404,7.25362142011344,9.41062637598899,48.364773974758,34.6705462325896,43.3164557513052,38.4401275633236,40.2033144246745,27.2547503507657,18.9752937958714,17.7858959222228,15.2982951937838,17.7995945262055,18.4724829885986,37.4500138148006,30.3532461204028,24.8855069540346,18.765825428105,18.2982716375702,49.7032712862618,51.2415015007743,17.8836566853833,15.7186572469908,16.5459381589804,78.182275509566,83.6352064457979,77.4176927611467,31.6527090552465,26.2569537138916,30.2129754922921,70.9124817463508,59.6528366633581,67.8424220129037,48.9083451886288,40.5759290277443,33.5519002485541,19.0072745266292,25.014186395346,34.7837386442013,42.1607699720879,75.4768180415603,46.9541776724901,36.3874793770695,31.8099089839108,40.728881838208,29.9957367737382,36.3700406444016,26.5004680882755,36.6192891419369,14.115912515575,15.2883143823987,7.11066703153331,24.8964697162896,24.0691872201344,27.8038444758131,39.8501740219519,4.40194402200192,55.8142442883741,18.3894446372104,32.273340701087,40.1270965225542,50.7935298662338,45.0364748329749,51.6489690364966,37.5736350956248,36.005239873058,58.3842964286917,32.8386705393241,41.0765224336332,34.4261429726008,26.0948465705371,52.4077626650669,58.435631200954,15.5828803677241,8.14742846640258,4.79922184794726,9.14905634926066,77.741341851103,68.1675898199753,28.0209205211688,83.9571466528695,88.4775482362944,84.7775221803005,66.6811591208484,27.2929495118848,36.9488702711976,43.468314450592,48.1911849980025,14.8337304977482,22.0706020256134,21.7875177064473,23.6606564002073,27.0785266622285,28.953700784376,30.1719553082327,38.8055056108524,14.0119195406347,12.1027891307404,16.1875034230833,20.8235945806196,22.5218271872734,43.5315208152708,49.7992770107223,16.1217756122979,4.21327912387941,4.37491442095016,6.81992398549422,19.6769483908727,20.1692411583743,24.668502420159,29.1196024769809,24.0052362731833,27.3052789810659,29.9968788728026,26.0225199357631,25.5716099784101,31.1018116336478,46.623559798463,50.6680059661598,53.5091953976716,48.5205754793222,51.9378840602639,62.4561147235458,27.9900545671654,20.1555457620117,9.25576983322405,13.8637362847902,13.4697269679054,14.6908905907186,13.5127961497639,20.0140239460383,22.6368495073945,21.8283368310475,24.0460473897056,29.1548842208313,27.2570366696377,26.7100799353195,8.08937467788799,18.371734239349,19.1175622324193,20.6738012038859,15.0808036644842,9.01661885384643,23.2162513743658,20.1710586654331,20.479659407973,31.4285589507559,40.445180546411,38.1506908654541,36.7723548486966,43.2820835547237,25.5273011745624,36.5599730910558,35.9779379815766,47.0635481621327,52.3354436662745,53.980680577661,35.3866249064497,41.8308885079591,32.9473695825698,96.3246983733275,45.4011956155574,41.188972851122,35.6136217905428,40.0056232153864,51.6214567858803,32.8860678496556,17.6227012946551,18.578007314391,19.6904299499218,17.6017686216377,24.7909261013887,30.2315423925237,38.0510613322708,46.187097223114,46.7290495158915,50.7066164330809,42.2767351966604,46.27957514006,43.250068515872,9.04747703635634,6.52686820582452,30.9811492001993,21.2471294654644,76.2615302442012,60.7156536547612,47.5411341592359,65.3899701459326,17.3529520678941,16.0079885161622,18.3109888072879,18.6395662402991,18.7150886229211,20.0984336860071,22.2645885921192,19.5811424800579,26.4842811224171,56.8738730066598,30.9429385754026,18.6968883850618,22.6412873501471,27.5500105364134,35.84118735179,11.1679092631291,15.7208249621671,16.7858520982749,17.4228116799656,24.9022469834581,29.4608254211772,26.5379622518579,19.250858432775,31.2876390356458,65.3595373164992,50.5364161916116,50.0446220458068,20.3469036255381,22.120334926851,25.5061071687595,37.596129532162,32.819862438781,38.5044708208963,28.3152402676577,72.5135577916865,41.5190858893088,19.1859706307817,53.588032205981,51.345687689298,47.4662719184587,54.5531612094334,51.8685243194394,15.1570035047522,62.1174761735207,26.9975991660607,16.5109494370578,22.5937323391048,53.8733787033416,34.1735569302563,55.135539742772,16.9978429993855,15.1147568509551,17.8277966207707,37.2321541025894,14.2351197111511,16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| |||
|short_description=p1@Rnf11 | |||
}} |
Latest revision as of 03:41, 26 September 2015
Short description: | p1@Rnf11 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rnf11_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 9bp_to_ENSMUST00000030284_5end |
EntrezGene: | Rnf11 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 1.12e-16 | 122 |
tube | 6.09e-15 | 114 |
regional part of nervous system | 3.69e-10 | 54 |
structure with developmental contribution from neural crest | 4.61e-10 | 92 |
ectoderm-derived structure | 3.18e-09 | 95 |
ectoderm | 3.18e-09 | 95 |
presumptive ectoderm | 3.18e-09 | 95 |
neural tube | 4.67e-09 | 52 |
neural rod | 4.67e-09 | 52 |
future spinal cord | 4.67e-09 | 52 |
neural keel | 4.67e-09 | 52 |
ecto-epithelium | 8.11e-09 | 73 |
brain | 8.58e-08 | 47 |
future brain | 8.58e-08 | 47 |
central nervous system | 1.00e-07 | 73 |
regional part of brain | 2.11e-07 | 46 |
nervous system | 2.48e-07 | 75 |
occipital lobe | 3.49e-07 | 10 |
visual cortex | 3.49e-07 | 10 |
neocortex | 3.49e-07 | 10 |
neurectoderm | 5.77e-07 | 64 |
neural plate | 5.77e-07 | 64 |
presumptive neural plate | 5.77e-07 | 64 |