FFCP PHASE1:Hg19::chr8:97597117..97597144,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6383 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10659 | |||
|TSSclassifier=strong | |||
|UniProt=E5RHU3 | |||
|association_with_transcript=-28bp_to_ENST00000521590_5end | |||
|cluster_id=chr8:97597117..97597144,+ | |||
|description=CAGE_peak_5_at_SDC2_5end | |||
|id=chr8:97597117..97597144,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.91e-32!180;CL:0000057!8.56e-22!75;CL:0002620!8.33e-18!23;CL:0000048!2.07e-16!430;CL:0000723!4.11e-16!436;CL:0000034!3.92e-15!444;CL:0000187!6.29e-13!54;CL:0000680!8.40e-13!57;CL:0000056!8.40e-13!57;CL:0000355!8.40e-13!57;CL:0000393!1.56e-12!60;CL:0000211!1.56e-12!60;CL:0000183!7.39e-12!59;CL:0000359!2.53e-09!32;CL:0002371!5.38e-09!591;CL:0000192!5.40e-09!42;CL:0000514!5.40e-09!42;CL:0002320!5.20e-08!365;CL:0000144!1.73e-07!625;CL:0002334!1.94e-07!12;CL:0000134!3.30e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.92e-20;23!CL:0002594;7.05e-15;4!CL:0000057;5.50e-08;73!CL:0000359;5.79e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,5.02e-20,23;CL:0002594,2.18e-15,4;CL:0000057,1.74e-13,76;CL:0000048,1.93e-10,427;CL:0000723,3.85e-10,433;CL:0000034,9.40e-10,441;CL:0000359,2.33e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.38e-09!14;DOID:17!5.09e-07!5;DOID:450!5.09e-07!5;DOID:66!5.09e-07!5;DOID:423!5.09e-07!5;DOID:0080000!5.09e-07!5;DOID:11722!5.09e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.19e-11;14!DOID:17;3.55e-07;5!DOID:450;3.55e-07;5!DOID:66;3.55e-07;5!DOID:423;3.55e-07;5!DOID:0080000;3.55e-07;5!DOID:11722;3.55e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.63e-12,14;DOID:17,4.45e-07,5;DOID:450,4.45e-07,5;DOID:66,4.45e-07,5;DOID:423,4.45e-07,5;DOID:0080000,4.45e-07,5;DOID:11722,4.45e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.67e-16!83;UBERON:0002329!2.67e-16!83;UBERON:0003077!2.67e-16!83;UBERON:0003059!2.67e-16!83;UBERON:0007282!2.67e-16!83;UBERON:0009618!2.67e-16!83;UBERON:0007285!2.67e-16!83;UBERON:0004290!2.07e-13!70;UBERON:0001134!2.63e-11!61;UBERON:0002036!2.63e-11!61;UBERON:0003082!2.63e-11!61;UBERON:0002097!7.26e-11!40;UBERON:0002199!7.49e-11!45;UBERON:0002416!7.49e-11!45;UBERON:0002385!1.23e-10!63;UBERON:0001015!1.23e-10!63;UBERON:0000383!1.23e-10!63;UBERON:0000486!8.48e-10!82;UBERON:0002384!3.26e-09!375;UBERON:0005256!1.03e-07!143;UBERON:0003102!3.56e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0001310;7.05e-15;4!UBERON:0002118;3.29e-12;5!UBERON:0002097;6.67e-10;41!UBERON:0000992;1.85e-09;13!UBERON:0002199;4.05e-09;46!UBERON:0002416;4.05e-09;46!UBERON:0003102;9.00e-08;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001310,2.18e-15,4;UBERON:0002097,3.85e-14,41;UBERON:0002199,3.02e-12,46;UBERON:0002416,3.02e-12,46;UBERON:0002118,3.33e-12,5;UBERON:0000992,1.39e-09,13;UBERON:0002329,1.08e-07,71;UBERON:0003059,1.08e-07,71;UBERON:0007282,1.08e-07,71;UBERON:0004290,1.08e-07,71;UBERON:0009618,1.08e-07,71;UBERON:0002384,1.27e-07,371;UBERON:0003077,1.53e-07,72;UBERON:0007285,1.53e-07,72;UBERON:0007524,2.15e-07,73;UBERON:0010260,7.84e-07,9 | |||
|phase1_expression=0,0.642301571672949,0.704772020479856,1.0007329835313,0,0,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,1.20538905604795,0.730310090387373,0.975865597581014,0,0,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0.361439152384566,0.50133791063589,0.289693037921647,0,0,0,0.221729397462564,0,0,0,0,0.324547393654683,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,1.01304409331664,0.264818361626438,0.573673241497627,0,1.68203280042692,1.06748995729705,1.48000529050296,0,0,0,0.302714855289863,0.576175924479999,0.468642863667593,0.312160076830321,0,0,1.29177948508141,2.91371299862637,2.24721290723598,0,0,0,0,0.741800787835671,0,0,1.0100166837244,0.875829639103749,1.10825646193673,0,0.30648779579902,0.300476117813194,0.453728732640084,2.87023417102179,1.06778694409284,0.847727604638247,3.00091096084402,0.92747276314595,1.03056216018252,0.37223371266318,1.35021065793013,0.974370051611986,2.77677151668526,0.736399189138395,0.161646056818812,3.55009592516614,3.92933183087797,1.52604533079439,0,0,0,0,0,0,0,0,0,0,0,2.76269842704961,0,0,0,0.168584690078102,0,0.110293972732394,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,0.977424915930974,0,0,0.115930404975077,0.469634776943287,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0.43596006883328,1.10007428731425,1.55126058909333,0,2.535908257668,1.32969058292435,0,0.514414748524284,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,4.0736225433569,0,0,0.868687840005475,0,0,0,0,0,0,0,0,0,0.335032530668698,0.637938751653163,0,0,0,0.613457458595699,0,0.271265023699736,1.03985430765404,0.892144943985809,0.788512075169673,0.234282829985426,0.300946099727719,0,0,3.32112799267718,1.65932251687533,0.60818530127658,0,0,0,0,0,0,0,0,0,0.61384789315225,0.280660094433074,0.256278298511402,0.511707249066704,0.321707842287215,0,0.616838775210622,0.532685175939381,0.574890092096664,1.55776328755086,0.464841513839837,0,0,0,0.229628896329213,0,0.131124414959424,0,0.231046011313244,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0.574265537996172,0,0,0.580024309752732,0.154048617114644,0.307007349452259,0.413509717453592,1.18162269355101,0.145016693914229,0.596586391912706,0.356128142586949,0,0,0,0,0.464845549297286,0.94443704049192,1.3940745403212,0,0,0,0.18532421910392,1.00187420719394,0,2.53103539774981,0,0,0,0,0,0.179872457583315,0,0.353437207037059,0.404364963146632,0,0.842516912477962,0,0.731140468893853,0,0,0.141405431953713,0,1.10273068709225,0,0,0,0,3.85529716229138,1.8589409885985,1.69017361519345,0.860468113224309,0.392996164052485,3.92338156629375,1.06428319221179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.90975216557434,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,1.4655614944298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,2.16179930125442,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,1.36310417428337,0,0.146552233678082,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0,0,0,0,0,0,0.597019211547496,0.467426619694449,0.554805861502613,1.51522404220071,0.251567901752575,0,0,0,0.310874401165561,0.147855149989634,1.43367090447332,0,1.70789252563885,0.414706207840855,1.86089200190596,0.521745061811734,0.300515217994437,0.761610424337591,2.84809513243263,3.09142720644351,0,1.39210127963548,3.18476710958893,0.800055529326307,0.686791410365586,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0.982829546539238,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0.212574920101683,0,0.558644917973244,0.318004350653419,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1441462864015,0,0.795664888465099,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703484977438482,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0.849635573439084,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9307228228694,0,2.34640942403454,0.122241444182866,0,0,0,0 | |||
|short_description=p5@SDC2 | |||
}} |
Latest revision as of 14:25, 19 September 2015
Short description: | p5@SDC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SDC2_5end |
Coexpression cluster: | NA |
Association with transcript: | -28bp_to_ENST00000521590_5end |
EntrezGene: | SDC2 |
HGNC: | 10659 |
UniProt: | E5RHU3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 5.02e-20 | 23 |
smooth muscle cell of the umbilical artery | 2.18e-15 | 4 |
fibroblast | 1.74e-13 | 76 |
multi fate stem cell | 1.93e-10 | 427 |
somatic stem cell | 3.85e-10 | 433 |
stem cell | 9.40e-10 | 441 |
vascular associated smooth muscle cell | 2.33e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
umbilical artery | 2.18e-15 | 4 |
skin of body | 3.85e-14 | 41 |
integument | 3.02e-12 | 46 |
integumental system | 3.02e-12 | 46 |
right ovary | 3.33e-12 | 5 |
female gonad | 1.39e-09 | 13 |
somite | 1.08e-07 | 71 |
presomitic mesoderm | 1.08e-07 | 71 |
presumptive segmental plate | 1.08e-07 | 71 |
dermomyotome | 1.08e-07 | 71 |
trunk paraxial mesoderm | 1.08e-07 | 71 |
connective tissue | 1.27e-07 | 371 |
paraxial mesoderm | 1.53e-07 | 72 |
presumptive paraxial mesoderm | 1.53e-07 | 72 |
dense mesenchyme tissue | 2.15e-07 | 73 |
umbilical blood vessel | 7.84e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.63e-12 | 14 |
musculoskeletal system disease | 4.45e-07 | 5 |
myotonic disease | 4.45e-07 | 5 |
muscle tissue disease | 4.45e-07 | 5 |
myopathy | 4.45e-07 | 5 |
muscular disease | 4.45e-07 | 5 |
myotonic dystrophy | 4.45e-07 | 5 |