Personal tools

FFCP PHASE1:Hg19::chr9:112179990..112179998,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP|DPIdataset=robustDPI|EntrezGene=5774|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9655|TSSclassifier=S|UniProt=B7Z8K9|association_with_transcript=64bp_to_ENST00000394827,NR_026918,uc011lwd.1_5end|coexpression_cluster_id=C141|description=CAGE_peak_17_at_PTPN3_5end|id=chr9:112179990..112179998,-|ontology_enrichment_celltype=CL:0000946!7.62e-26!1;CL:0000786!7.62e-26!1;CL:0000980!7.62e-26!1;CL:0000785!1.21e-13!2;CL:0000955!1.21e-13!2;CL:0000818!1.21e-13!2;CL:0000954!1.21e-13!2;CL:0000816!1.21e-13!2;CL:0000817!1.54e-09!3|ontology_enrichment_celltype_v019=CL:0000084;1.15e-11;25|ontology_enrichment_celltype_v019_2=CL:0000084,1.15e-11,25;CL:0000827,1.15e-11,25|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0060058!6.61e-11!10;DOID:2531!3.03e-08!51;DOID:0060083!3.03e-08!51|ontology_enrichment_disease_v019=DOID:2531;2.50e-10;51!DOID:0060083;2.50e-10;51!DOID:1036;1.35e-09;8!DOID:0060058;5.73e-08;10|ontology_enrichment_disease_v019_2=DOID:2531,1.06e-12,51;DOID:0060083,1.06e-12,51;DOID:1036,1.35e-09,8;DOID:0060058,5.73e-08,10;DOID:1240,7.07e-08,39|ontology_enrichment_uberon=UBERON:0004177!3.19e-32!7;UBERON:0002370!1.11e-25!4;UBERON:0005058!1.11e-25!4;UBERON:0009113!1.11e-25!4;UBERON:0003295!1.11e-25!4;UBERON:0005562!1.11e-25!4;UBERON:0003351!1.71e-17!6;UBERON:0000974!6.61e-11!10;UBERON:0003408!6.61e-11!10;UBERON:0001042!6.61e-11!10;UBERON:0009145!6.61e-11!10;UBERON:0006562!5.29e-10!11;UBERON:0009722!5.29e-10!11;UBERON:0007690!5.29e-10!11;UBERON:0002106!1.81e-09!3;UBERON:0004854!1.81e-09!3;UBERON:0009034!1.81e-09!3;UBERON:0002095!1.81e-09!3;UBERON:0004782!1.81e-09!3;UBERON:0003281!1.81e-09!3;UBERON:0009664!1.81e-09!3;UBERON:0002296!1.81e-09!3;UBERON:0005602!1.81e-09!3;UBERON:0001179!1.81e-09!3;UBERON:0006293!1.81e-09!3;UBERON:0005057!3.16e-09!26;UBERON:0008814!1.40e-07!15|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.82926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77854608371035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322944549180031,0.744896571550295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p17@PTPN3}}
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=5774
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=9655
|TSSclassifier=strong
|UniProt=B7Z8K9
|association_with_transcript=64bp_to_ENST00000394827,NR_026918,uc011lwd.1_5end
|cluster_id=chr9:112179990..112179998,-
|coexpression_cluster_id=C141
|description=CAGE_peak_17_at_PTPN3_5end
|id=chr9:112179990..112179998,-
|ontology_enrichment_celltype=CL:0000946!7.62e-26!1;CL:0000786!7.62e-26!1;CL:0000980!7.62e-26!1;CL:0000785!1.21e-13!2;CL:0000955!1.21e-13!2;CL:0000818!1.21e-13!2;CL:0000954!1.21e-13!2;CL:0000816!1.21e-13!2;CL:0000817!1.54e-09!3
|ontology_enrichment_celltype_v019=CL:0000084;1.15e-11;25
|ontology_enrichment_celltype_v019_2=CL:0000084,1.15e-11,25;CL:0000827,1.15e-11,25
|ontology_enrichment_development_v019=
|ontology_enrichment_disease=DOID:0060058!6.61e-11!10;DOID:2531!3.03e-08!51;DOID:0060083!3.03e-08!51
|ontology_enrichment_disease_v019=DOID:2531;2.50e-10;51!DOID:0060083;2.50e-10;51!DOID:1036;1.35e-09;8!DOID:0060058;5.73e-08;10
|ontology_enrichment_disease_v019_2=DOID:2531,1.06e-12,51;DOID:0060083,1.06e-12,51;DOID:1036,1.35e-09,8;DOID:0060058,5.73e-08,10;DOID:1240,7.07e-08,39
|ontology_enrichment_uberon=UBERON:0004177!3.19e-32!7;UBERON:0002370!1.11e-25!4;UBERON:0005058!1.11e-25!4;UBERON:0009113!1.11e-25!4;UBERON:0003295!1.11e-25!4;UBERON:0005562!1.11e-25!4;UBERON:0003351!1.71e-17!6;UBERON:0000974!6.61e-11!10;UBERON:0003408!6.61e-11!10;UBERON:0001042!6.61e-11!10;UBERON:0009145!6.61e-11!10;UBERON:0006562!5.29e-10!11;UBERON:0009722!5.29e-10!11;UBERON:0007690!5.29e-10!11;UBERON:0002106!1.81e-09!3;UBERON:0004854!1.81e-09!3;UBERON:0009034!1.81e-09!3;UBERON:0002095!1.81e-09!3;UBERON:0004782!1.81e-09!3;UBERON:0003281!1.81e-09!3;UBERON:0009664!1.81e-09!3;UBERON:0002296!1.81e-09!3;UBERON:0005602!1.81e-09!3;UBERON:0001179!1.81e-09!3;UBERON:0006293!1.81e-09!3;UBERON:0005057!3.16e-09!26;UBERON:0008814!1.40e-07!15
|ontology_enrichment_uberon_v019=
|ontology_enrichment_uberon_v019_2=
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.82926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77854608371035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322944549180031,0.744896571550295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|short_description=p17@PTPN3
}}

Latest revision as of 02:09, 20 September 2015

Short description:p17@PTPN3
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_17_at_PTPN3_5end
Coexpression cluster:C141_Hodgkin_acute_thymus_chronic_vein_CD4_B
Association with transcript: 64bp_to_ENST00000394827, NR_026918, uc011lwd.1_5end
EntrezGene:PTPN3
HGNC: 9655
UniProt: B7Z8K9
Genome view:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0
2
4
6
8
10




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data