FFCP PHASE1:Mm9::chr8:28479265..28479279,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=108043|HGNC=|MCL_coexpression_id=1820|UniProt=Q8BMN3,Q3UZS0|association_with_transcript=82bp_to_ENSMUST00000060943,ENSMUST00000079463,NM_027454,NM_173212,uc009lis.1,uc009lit.2,uc009liu.2_5end|description=CAGE_peak_1_at_Chrnb3_5end|id=chr8:28479265..28479279,+|ontology_enrichment_celltype=CL:0000117!1.52e-09!23;CL:0000337!1.52e-09!23;CL:0002614!2.55e-07!3;CL:0000540!5.62e-07!33;CL:0000047!5.62e-07!33;CL:0000031!5.62e-07!33;CL:0000404!5.62e-07!33;CL:0002610!6.55e-07!3|ontology_enrichment_celltype_v019_2=CL:0002614,6.91e-15,3;CL:0002610,6.07e-14,3;CL:0000117,6.25e-09,23;CL:0000337,6.25e-09,23;CL:0000540,1.12e-07,33;CL:0000047,1.12e-07,33;CL:0000031,1.12e-07,33;CL:0000404,1.12e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.32e-22!63;UBERON:0003056!1.20e-20!49;UBERON:0000970!6.59e-17!9;UBERON:0000019!6.59e-17!9;UBERON:0000047!6.59e-17!9;UBERON:0004088!6.59e-17!9;UBERON:0002104!6.59e-17!9;UBERON:0001456!6.59e-17!9;UBERON:0003072!6.59e-17!9;UBERON:0003071!6.59e-17!9;UBERON:0004128!6.59e-17!9;UBERON:0004121!5.73e-16!102;UBERON:0000924!5.73e-16!102;UBERON:0006601!5.73e-16!102;UBERON:0002346!1.16e-15!71;UBERON:0003075!1.16e-15!71;UBERON:0007284!1.16e-15!71;UBERON:0000020!4.84e-15!12;UBERON:0001032!4.84e-15!12;UBERON:0004456!4.84e-15!12;UBERON:0007811!2.41e-14!86;UBERON:0005085!1.06e-13!13;UBERON:0001444!1.86e-13!11;UBERON:0000153!1.97e-12!94;UBERON:0002616!3.29e-12!49;UBERON:0000955!7.44e-12!50;UBERON:0006238!7.44e-12!50;UBERON:0000073!1.26e-11!75;UBERON:0001016!1.26e-11!75;UBERON:0001017!3.81e-11!73;UBERON:0005743!3.81e-11!73;UBERON:0003080!9.77e-10!40;UBERON:0001049!1.67e-09!52;UBERON:0005068!1.67e-09!52;UBERON:0006241!1.67e-09!52;UBERON:0007135!1.67e-09!52;UBERON:0002950!5.10e-09!4;UBERON:0001891!5.10e-09!4;UBERON:0009616!5.10e-09!4;UBERON:0002780!1.02e-08!39;UBERON:0001890!1.02e-08!39;UBERON:0006240!1.02e-08!39;UBERON:0002298!1.18e-08!6;UBERON:0002420!2.72e-08!8;UBERON:0007245!2.72e-08!8;UBERON:0010009!2.72e-08!8;UBERON:0010011!2.72e-08!8;UBERON:0000454!2.72e-08!8;UBERON:0002038!2.55e-07!3;UBERON:0002308!2.55e-07!3;UBERON:0009663!2.55e-07!3;UBERON:0009661!2.55e-07!3;UBERON:0006331!2.55e-07!3;UBERON:0000125!2.55e-07!3;UBERON:0004684!6.55e-07!3;UBERON:0002275!6.55e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000970,6.68e-24,9;UBERON:0000019,6.68e-24,9;UBERON:0000047,6.68e-24,9;UBERON:0010312,6.68e-24,9;UBERON:0004088,6.68e-24,9;UBERON:0002104,6.68e-24,9;UBERON:0001456,6.68e-24,9;UBERON:0003072,6.68e-24,9;UBERON:0004128,6.68e-24,9;UBERON:0003071,6.68e-24,9;UBERON:0000020,8.17e-23,12;UBERON:0001032,8.17e-23,12;UBERON:0004456,8.17e-23,12;UBERON:0000033,5.49e-21,13;UBERON:0005085,5.49e-21,13;UBERON:0001444,1.97e-19,11;UBERON:0002950,8.34e-19,4;UBERON:0001891,8.34e-19,4;UBERON:0009616,8.34e-19,4;UBERON:0010286,8.34e-19,4;UBERON:0003056,1.84e-18,49;UBERON:0004121,3.75e-16,95;UBERON:0000924,3.75e-16,95;UBERON:0006601,3.75e-16,95;UBERON:0002038,6.91e-15,3;UBERON:0009663,6.91e-15,3;UBERON:0009661,6.91e-15,3;UBERON:0000125,6.91e-15,3;UBERON:0002308,6.91e-15,3;UBERON:0004684,6.07e-14,3;UBERON:0002275,6.07e-14,3;UBERON:0002346,1.45e-13,64;UBERON:0003075,1.45e-13,64;UBERON:0007284,1.45e-13,64;UBERON:0010371,2.65e-13,73;UBERON:0010314,5.15e-10,92;UBERON:0000073,2.07e-08,54;UBERON:0001017,3.21e-08,73;UBERON:0001016,6.07e-08,75;UBERON:0007811,6.21e-07,36|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,1.5869729378161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40463523997555,4.08599481872601,5.68344173048101,0.395658863190582,0.0914876436024097,0.52091337055676,7.2587579740359,8.4414391504752,9.47349136216223,0,0.142371680799103,0,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.14560342750128,0,0,0.521472960576829,0.511430914660661,6.2336413367868,3.0825839982874,0,0,0,4.8401626853889,0.260240885925407,0.229902104433473,2.70093194708024,7.68594570962147,5.71506592871154,5.50888997224854,3.27956035959051,15.78090561508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126473074248515,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.5116516142727,0,0,0,0,0.178368817602071,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0.675022500231806,0,0.453142408984205,1.55328093525546,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0.377252682772152,0,0.128050304809739,0.287177344778066,0.952587382566147,0,0,0,0.147198920134397,0,0,0.238436189947321,0.290692833264657,0,0,0,0,0,0,0.118635018124174,0,0,0.154936841185966,0,0,0,0,0,0,0|short_description=p1@Chrnb3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=108043 | |||
|HGNC= | |||
|MCL_coexpression_id=1820 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BMN3,Q3UZS0 | |||
|association_with_transcript=82bp_to_ENSMUST00000060943,ENSMUST00000079463,NM_027454,NM_173212,uc009lis.1,uc009lit.2,uc009liu.2_5end | |||
|cluster_id=chr8:28479265..28479279,+ | |||
|description=CAGE_peak_1_at_Chrnb3_5end | |||
|id=chr8:28479265..28479279,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.52e-09!23;CL:0000337!1.52e-09!23;CL:0002614!2.55e-07!3;CL:0000540!5.62e-07!33;CL:0000047!5.62e-07!33;CL:0000031!5.62e-07!33;CL:0000404!5.62e-07!33;CL:0002610!6.55e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002614,6.91e-15,3;CL:0002610,6.07e-14,3;CL:0000117,6.25e-09,23;CL:0000337,6.25e-09,23;CL:0000540,1.12e-07,33;CL:0000047,1.12e-07,33;CL:0000031,1.12e-07,33;CL:0000404,1.12e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.32e-22!63;UBERON:0003056!1.20e-20!49;UBERON:0000970!6.59e-17!9;UBERON:0000019!6.59e-17!9;UBERON:0000047!6.59e-17!9;UBERON:0004088!6.59e-17!9;UBERON:0002104!6.59e-17!9;UBERON:0001456!6.59e-17!9;UBERON:0003072!6.59e-17!9;UBERON:0003071!6.59e-17!9;UBERON:0004128!6.59e-17!9;UBERON:0004121!5.73e-16!102;UBERON:0000924!5.73e-16!102;UBERON:0006601!5.73e-16!102;UBERON:0002346!1.16e-15!71;UBERON:0003075!1.16e-15!71;UBERON:0007284!1.16e-15!71;UBERON:0000020!4.84e-15!12;UBERON:0001032!4.84e-15!12;UBERON:0004456!4.84e-15!12;UBERON:0007811!2.41e-14!86;UBERON:0005085!1.06e-13!13;UBERON:0001444!1.86e-13!11;UBERON:0000153!1.97e-12!94;UBERON:0002616!3.29e-12!49;UBERON:0000955!7.44e-12!50;UBERON:0006238!7.44e-12!50;UBERON:0000073!1.26e-11!75;UBERON:0001016!1.26e-11!75;UBERON:0001017!3.81e-11!73;UBERON:0005743!3.81e-11!73;UBERON:0003080!9.77e-10!40;UBERON:0001049!1.67e-09!52;UBERON:0005068!1.67e-09!52;UBERON:0006241!1.67e-09!52;UBERON:0007135!1.67e-09!52;UBERON:0002950!5.10e-09!4;UBERON:0001891!5.10e-09!4;UBERON:0009616!5.10e-09!4;UBERON:0002780!1.02e-08!39;UBERON:0001890!1.02e-08!39;UBERON:0006240!1.02e-08!39;UBERON:0002298!1.18e-08!6;UBERON:0002420!2.72e-08!8;UBERON:0007245!2.72e-08!8;UBERON:0010009!2.72e-08!8;UBERON:0010011!2.72e-08!8;UBERON:0000454!2.72e-08!8;UBERON:0002038!2.55e-07!3;UBERON:0002308!2.55e-07!3;UBERON:0009663!2.55e-07!3;UBERON:0009661!2.55e-07!3;UBERON:0006331!2.55e-07!3;UBERON:0000125!2.55e-07!3;UBERON:0004684!6.55e-07!3;UBERON:0002275!6.55e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,6.68e-24,9;UBERON:0000019,6.68e-24,9;UBERON:0000047,6.68e-24,9;UBERON:0010312,6.68e-24,9;UBERON:0004088,6.68e-24,9;UBERON:0002104,6.68e-24,9;UBERON:0001456,6.68e-24,9;UBERON:0003072,6.68e-24,9;UBERON:0004128,6.68e-24,9;UBERON:0003071,6.68e-24,9;UBERON:0000020,8.17e-23,12;UBERON:0001032,8.17e-23,12;UBERON:0004456,8.17e-23,12;UBERON:0000033,5.49e-21,13;UBERON:0005085,5.49e-21,13;UBERON:0001444,1.97e-19,11;UBERON:0002950,8.34e-19,4;UBERON:0001891,8.34e-19,4;UBERON:0009616,8.34e-19,4;UBERON:0010286,8.34e-19,4;UBERON:0003056,1.84e-18,49;UBERON:0004121,3.75e-16,95;UBERON:0000924,3.75e-16,95;UBERON:0006601,3.75e-16,95;UBERON:0002038,6.91e-15,3;UBERON:0009663,6.91e-15,3;UBERON:0009661,6.91e-15,3;UBERON:0000125,6.91e-15,3;UBERON:0002308,6.91e-15,3;UBERON:0004684,6.07e-14,3;UBERON:0002275,6.07e-14,3;UBERON:0002346,1.45e-13,64;UBERON:0003075,1.45e-13,64;UBERON:0007284,1.45e-13,64;UBERON:0010371,2.65e-13,73;UBERON:0010314,5.15e-10,92;UBERON:0000073,2.07e-08,54;UBERON:0001017,3.21e-08,73;UBERON:0001016,6.07e-08,75;UBERON:0007811,6.21e-07,36 | |||
|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,1.5869729378161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40463523997555,4.08599481872601,5.68344173048101,0.395658863190582,0.0914876436024097,0.52091337055676,7.2587579740359,8.4414391504752,9.47349136216223,0,0.142371680799103,0,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.14560342750128,0,0,0.521472960576829,0.511430914660661,6.2336413367868,3.0825839982874,0,0,0,4.8401626853889,0.260240885925407,0.229902104433473,2.70093194708024,7.68594570962147,5.71506592871154,5.50888997224854,3.27956035959051,15.78090561508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126473074248515,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.5116516142727,0,0,0,0,0.178368817602071,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0.675022500231806,0,0.453142408984205,1.55328093525546,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0.377252682772152,0,0.128050304809739,0.287177344778066,0.952587382566147,0,0,0,0.147198920134397,0,0,0.238436189947321,0.290692833264657,0,0,0,0,0,0,0.118635018124174,0,0,0.154936841185966,0,0,0,0,0,0,0 | |||
|short_description=p1@Chrnb3 | |||
}} |
Latest revision as of 21:43, 1 October 2015
Short description: | p1@Chrnb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Chrnb3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1820 |
Association with transcript: | 82bp_to_ENSMUST00000060943, ENSMUST00000079463, NM_027454, NM_173212, uc009lis.1, uc009lit.2, uc009liu.2_5end |
EntrezGene: | Chrnb3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the substantia nigra | 6.91e-15 | 3 |
raphe nuclei neuron | 6.07e-14 | 3 |
CNS neuron (sensu Vertebrata) | 6.25e-09 | 23 |
neuroblast (sensu Vertebrata) | 6.25e-09 | 23 |
neuron | 1.12e-07 | 33 |
neuronal stem cell | 1.12e-07 | 33 |
neuroblast | 1.12e-07 | 33 |
electrically signaling cell | 1.12e-07 | 33 |