FF:10055-101H1: Difference between revisions

Latest revision as of 12:18, 3 June 2020

Name:	uterus, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11763
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	uterus
dev stage	26 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	B402230
catalog number	Cat:RtHFN: Uterus
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005818

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11763		CAGE		DRX008757		DRR009629

Accession ID Hg19

Library id		BAM		CTSS
CNhs11763		DRZ001054		DRZ002439

Accession ID Hg38

Library id		BAM		CTSS
CNhs11763		DRZ012404		DRZ013789

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0774
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.152
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.148
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.386
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.629
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.116
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0148
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.346
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0319
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.346
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0415
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.346
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.346
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0688
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0.346
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.402
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.00525
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.42
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.148
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0115
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0236
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.108
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.259
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.42
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.851
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.148
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.101
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.259
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.259
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.77
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0.42
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0705
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11763

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.67785e-5
MA0003.1	MA0003.1	0.212
MA0004.1	MA0004.1	0.0369
MA0006.1	MA0006.1	0.767
MA0007.1	MA0007.1	0.539
MA0009.1	MA0009.1	0.203
MA0014.1	MA0014.1	0.284
MA0017.1	MA0017.1	0.00352
MA0018.2	MA0018.2	0.0957
MA0019.1	MA0019.1	0.909
MA0024.1	MA0024.1	0.349
MA0025.1	MA0025.1	0.0571
MA0027.1	MA0027.1	0.767
MA0028.1	MA0028.1	0.00187
MA0029.1	MA0029.1	0.474
MA0030.1	MA0030.1	0.785
MA0031.1	MA0031.1	0.973
MA0035.2	MA0035.2	0.167
MA0038.1	MA0038.1	0.256
MA0039.2	MA0039.2	0.751
MA0040.1	MA0040.1	0.257
MA0041.1	MA0041.1	0.508
MA0042.1	MA0042.1	0.844
MA0043.1	MA0043.1	0.00741
MA0046.1	MA0046.1	0.849
MA0047.2	MA0047.2	0.0633
MA0048.1	MA0048.1	0.751
MA0050.1	MA0050.1	0.00262
MA0051.1	MA0051.1	0.00244
MA0052.1	MA0052.1	0.477
MA0055.1	MA0055.1	0.0844
MA0057.1	MA0057.1	0.804
MA0058.1	MA0058.1	0.00742
MA0059.1	MA0059.1	0.0027
MA0060.1	MA0060.1	0.307
MA0061.1	MA0061.1	3.09672e-4
MA0062.2	MA0062.2	2.48648e-7
MA0065.2	MA0065.2	3.81654e-4
MA0066.1	MA0066.1	0.0993
MA0067.1	MA0067.1	0.0369
MA0068.1	MA0068.1	8.55126e-6
MA0069.1	MA0069.1	0.404
MA0070.1	MA0070.1	0.347
MA0071.1	MA0071.1	0.15
MA0072.1	MA0072.1	0.294
MA0073.1	MA0073.1	0.327
MA0074.1	MA0074.1	0.887
MA0076.1	MA0076.1	9.56098e-4
MA0077.1	MA0077.1	0.828
MA0078.1	MA0078.1	0.464
MA0079.2	MA0079.2	0.957
MA0080.2	MA0080.2	5.15652e-8
MA0081.1	MA0081.1	0.0123
MA0083.1	MA0083.1	0.0805
MA0084.1	MA0084.1	0.301
MA0087.1	MA0087.1	0.146
MA0088.1	MA0088.1	0.0288
MA0090.1	MA0090.1	0.377
MA0091.1	MA0091.1	0.918
MA0092.1	MA0092.1	0.447
MA0093.1	MA0093.1	0.0387
MA0099.2	MA0099.2	1.29286e-18
MA0100.1	MA0100.1	0.379
MA0101.1	MA0101.1	3.37668e-4
MA0102.2	MA0102.2	0.0499
MA0103.1	MA0103.1	0.394
MA0104.2	MA0104.2	0.00321
MA0105.1	MA0105.1	7.88965e-8
MA0106.1	MA0106.1	0.111
MA0107.1	MA0107.1	6.86814e-4
MA0108.2	MA0108.2	1.25541e-9
MA0111.1	MA0111.1	0.855
MA0112.2	MA0112.2	0.00307
MA0113.1	MA0113.1	0.622
MA0114.1	MA0114.1	0.00149
MA0115.1	MA0115.1	0.00283
MA0116.1	MA0116.1	2.37807e-4
MA0117.1	MA0117.1	0.282
MA0119.1	MA0119.1	0.252
MA0122.1	MA0122.1	0.859
MA0124.1	MA0124.1	0.241
MA0125.1	MA0125.1	0.413
MA0131.1	MA0131.1	0.813
MA0135.1	MA0135.1	0.374
MA0136.1	MA0136.1	4.04735e-11
MA0137.2	MA0137.2	0.573
MA0138.2	MA0138.2	0.603
MA0139.1	MA0139.1	0.0669
MA0140.1	MA0140.1	0.231
MA0141.1	MA0141.1	0.00481
MA0142.1	MA0142.1	0.0809
MA0143.1	MA0143.1	0.514
MA0144.1	MA0144.1	0.706
MA0145.1	MA0145.1	0.868
MA0146.1	MA0146.1	0.101
MA0147.1	MA0147.1	0.00299
MA0148.1	MA0148.1	0.0239
MA0149.1	MA0149.1	0.0129
MA0150.1	MA0150.1	4.9565e-9
MA0152.1	MA0152.1	0.0249
MA0153.1	MA0153.1	0.16
MA0154.1	MA0154.1	0.0013
MA0155.1	MA0155.1	0.951
MA0156.1	MA0156.1	7.86274e-7
MA0157.1	MA0157.1	0.626
MA0159.1	MA0159.1	0.0147
MA0160.1	MA0160.1	0.00132
MA0162.1	MA0162.1	0.564
MA0163.1	MA0163.1	1.02523e-7
MA0164.1	MA0164.1	0.288
MA0258.1	MA0258.1	0.0366
MA0259.1	MA0259.1	0.324

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11763

Novel motif	Logo	P-value
1	1	0.01
10	10	0.0443
100	100	0.311
101	101	0.53
102	102	0.526
103	103	0.247
104	104	0.712
105	105	0.873
106	106	0.238
107	107	0.678
108	108	0.877
109	109	0.00727
11	11	0.0801
110	110	0.191
111	111	0.0086
112	112	0.211
113	113	0.0367
114	114	7.1111e-4
115	115	0.184
116	116	0.933
117	117	0.00414
118	118	0.0792
119	119	0.409
12	12	0.278
120	120	0.388
121	121	0.751
122	122	0.306
123	123	0.0552
124	124	0.895
125	125	0.278
126	126	0.519
127	127	0.0687
128	128	0.543
129	129	0.775
13	13	0.0657
130	130	0.36
131	131	0.91
132	132	0.129
133	133	0.972
134	134	0.843
135	135	0.777
136	136	0.652
137	137	0.134
138	138	0.252
139	139	0.155
14	14	0.403
140	140	0.865
141	141	0.602
142	142	0.592
143	143	0.0209
144	144	0.777
145	145	0.839
146	146	0.412
147	147	0.821
148	148	0.0233
149	149	0.659
15	15	0.0275
150	150	0.486
151	151	0.357
152	152	0.222
153	153	0.846
154	154	0.913
155	155	0.0806
156	156	0.61
157	157	0.522
158	158	0.12
159	159	0.621
16	16	0.412
160	160	0.704
161	161	0.624
162	162	0.135
163	163	0.534
164	164	0.0444
165	165	0.441
166	166	0.0886
167	167	0.0261
168	168	0.242
169	169	0.0252
17	17	0.325
18	18	0.0299
19	19	1
2	2	0.602
20	20	0.231
21	21	0.399
22	22	0.465
23	23	0.666
24	24	0.108
25	25	0.31
26	26	0.0212
27	27	0.733
28	28	0.668
29	29	0.0208
3	3	0.213
30	30	0.135
31	31	0.843
32	32	0.0128
33	33	0.188
34	34	0.652
35	35	0.166
36	36	0.0205
37	37	0.0206
38	38	0.27
39	39	0.668
4	4	0.9
40	40	0.0635
41	41	0.0256
42	42	0.23
43	43	0.13
44	44	0.958
45	45	0.527
46	46	0.136
47	47	0.0539
48	48	0.227
49	49	0.108
5	5	0.27
50	50	0.936
51	51	0.565
52	52	0.712
53	53	0.815
54	54	0.668
55	55	0.602
56	56	0.511
57	57	0.198
58	58	0.408
59	59	0.354
6	6	0.963
60	60	0.402
61	61	0.352
62	62	0.218
63	63	0.398
64	64	0.36
65	65	0.324
66	66	0.757
67	67	0.468
68	68	0.448
69	69	0.606
7	7	0.153
70	70	0.0179
71	71	0.0477
72	72	0.313
73	73	0.0195
74	74	0.477
75	75	0.00437
76	76	0.136
77	77	0.813
78	78	0.172
79	79	0.822
8	8	0.09
80	80	0.581
81	81	0.676
82	82	0.373
83	83	0.596
84	84	0.725
85	85	0.327
86	86	0.0759
87	87	0.0188
88	88	0.801
89	89	0.312
9	9	0.826
90	90	0.177
91	91	0.502
92	92	0.433
93	93	0.202
94	94	0.0341
95	95	0.00602
96	96	0.0999
97	97	0.932
98	98	0.131
99	99	0.416

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11763

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010055 human uterus - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0005795 (embryonic uterus)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010055 (human uterus - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0005795 (embryonic uterus)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008647
+|DRA_sample_Accession=CAGE@SAMD00005818
+|accession_numbers=CAGE;DRX008757;DRR009629;DRZ001054;DRZ002439;DRZ012404;DRZ013789
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0005795,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0002050,UBERON:0005423,UBERON:0001062
 |ancestors_in_cell_lineage_facet=
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.20!157.88!PEG3;;chr7:27224842..27224872,-!p1@HOXA11!2.08!118.00!HOXA11;;chr19:46801639..46801699,+!p1@HIF3A!1.94!87.08!HIF3A;;chr4:174451370..174451387,-!p1@HAND2!1.91!80.16!HAND2;;chr7:27224795..27224840,-!p2@HOXA11!1.89!76.50!HOXA11;;chr6:152128810..152128827,+!p2@ESR1!1.82!64.70!ESR1;;chr15:57511609..57511651,+!p2@TCF12!1.80!102.94!TCF12;;chr8:55370487..55370503,+!p1@SOX17!1.79!60.63!SOX17;;chr19:46800289..46800327,+!p2@HIF3A!1.78!58.59!HIF3A;;chr4:57547454..57547469,-!p1@HOPX!1.77!57.78!HOPX;;chr9:77112244..77112262,+!p1@RORB!1.73!59.00!RORB;;chr5:134369879..134369898,-!p2@PITX1!1.73!52.49!PITX1;;chr13:72441315..72441454,-!p1@DACH1!1.72!101.32!DACH1;;chr10:119302232..119302265,+!p1@EMX2!1.72!51.68!EMX2;;chr7:96654133..96654150,-!p1@DLX5!1.67!45.98!DLX5;;chr7:27192185..27192209,-!p1@HOXA3!1.66!45.17!HOXA3;;chr11:32457075..32457095,-!p1@WT1!1.63!41.50!WT1;;chr17:80797886..80797906,-!p1@ZNF750!1.63!41.50!ZNF750;;chr1:40105299..40105326,-!p1@HEYL!1.62!41.10!HEYL;;chr6:134210243..134210257,+!p1@TCF21!1.59!37.84!TCF21;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.40!ZBED1;;chr11:34642612..34642646,+!p1@EHF!1.52!32.14!EHF;;chr8:99956662..99956684,+!p1@OSR2!1.49!45.17!OSR2;;chr2:27371879..27371907,+!p1@TCF23!1.49!30.11!TCF23;;chr7:27213893..27213954,-!p1@HOXA10!1.48!28.89!HOXA10;;chr15:96873984..96873999,+!p3@NR2F2!1.47!201.01!NR2F2;;chr2:176981499..176981522,+!p2@HOXD10!1.46!28.08!HOXD10;;chr7:27239703..27239715,-!p1@HOXA13!1.45!27.26!HOXA13;;chr17:1959369..1959388,+!p2@HIC1!1.44!68.77!HIC1;;chr1:170633348..170633399,+!p2@PRRX1!1.40!32.96!PRRX1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.40!24.01!TFCP2L1;;chr20:62680984..62680999,-!p1@SOX18!1.39!31.33!SOX18;;chr3:128212033..128212051,-!p1@GATA2!1.38!23.19!GATA2;;chr6:152126790..152126828,+!p3@ESR1!1.38!22.79!ESR1;;chr2:177001290..177001315,+!p1@HOXD3!1.37!22.38!HOXD3;;chr2:66662281..66662308,+!p1@MEIS1!1.36!74.46!MEIS1;;chr2:166326200..166326216,+!p1@CSRNP3!1.36!31.74!CSRNP3;;chr21:39870339..39870443,-!p1@ERG!1.35!21.57!ERG;;chr10:119302268..119302282,+!p4@EMX2!1.35!21.16!EMX2;;chr10:119302508..119302559,+!p5@EMX2!1.35!21.16!EMX2;;chr1:209979467..209979494,-!p1@IRF6!1.33!22.79!IRF6;;chr5:158526917..158526932,-!p1@EBF1!1.31!47.61!EBF1;;chr16:79634595..79634620,-!p2@MAF!1.31!34.99!MAF;;chr13:72441074..72441172,-!p2@DACH1!1.31!19.53!DACH1;;chr2:66662396..66662407,+!p4@MEIS1!1.31!19.53!MEIS1;;chr15:96874012..96874042,+!p2@NR2F2!1.30!167.23!NR2F2;;chr2:66662895..66662907,+!p3@MEIS1!1.29!22.79!MEIS1;;chr16:51185172..51185197,-!p1@SALL1!1.29!18.72!SALL1;;chr6:152126830..152126847,+!p4@ESR1!1.29!18.72!ESR1;;chr7:27239740..27239759,-!p2@HOXA13!1.29!18.72!HOXA13;;chr18:53068911..53068935,-!p4@TCF4!1.28!20.34!TCF4;;chr7:27205136..27205164,-!p1@HOXA9!1.28!17.90!HOXA9;;chr16:79634624..79634642,-!p1@MAF!1.27!67.95!MAF;;chr3:169381420..169381535,-!p1@MECOM!1.27!20.75!MECOM;;chr2:145277882..145277967,-!p3@ZEB2!1.26!29.70!ZEB2;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.09!HOXB6;;chr8:10588010..10588030,-!p1@SOX7!1.26!17.09!SOX7;;chr11:128457446..128457461,-!p4@ETS1!1.26!17.09!ETS1;;chr11:32457413..32457431,-!p2@WT1!1.26!17.09!WT1;;chr20:30433396..30433414,-!p1@FOXS1!1.26!17.09!FOXS1;;chr2:66662249..66662267,+!p2@MEIS1!1.25!64.29!MEIS1;;chr1:170633262..170633285,+!p3@PRRX1!1.25!19.12!PRRX1;;chr1:201979743..201979762,+!p1@ELF3!1.25!16.68!ELF3;;chr6:152128782..152128803,+!p5@ESR1!1.25!16.68!ESR1;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.91!GATA2;;chr20:51588873..51588953,+!p1@TSHZ2!1.23!21.16!TSHZ2;;chr2:19558373..19558392,-!p1@OSR1!1.22!41.91!OSR1;;chr3:189507432..189507459,+!p1@TP63!1.22!15.46!TP63;;chr7:28220198..28220269,-!p2@JAZF1!1.21!133.06!JAZF1;;chrX:66763856..66763896,+!p1@AR!1.21!21.97!AR;;chr2:114036488..114036504,-!p1@PAX8!1.21!15.06!PAX8;;chr4:4861385..4861398,+!p1@MSX1!1.20!43.54!MSX1;;chr5:92919100..92919135,+!p3@NR2F1!1.20!17.90!NR2F1;;chr5:134369905..134369972,-!p1@PITX1!1.19!22.38!PITX1;;chr1:164528911..164528940,+!p7@PBX1!1.19!21.57!PBX1;;chr2:176981526..176981543,+!p3@HOXD10!1.19!14.65!HOXD10;;chr2:66662510..66662521,+!p6@MEIS1!1.19!14.65!MEIS1;;chr10:102505327..102505344,+!p1@PAX2!1.19!14.65!PAX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.18!20.34!ZBTB16;;chr17:74137321..74137337,-!p1@FOXJ1!1.18!14.24!FOXJ1;;chr1:24645832..24645853,+!p1@GRHL3!1.18!14.24!GRHL3;;chr11:101000537..101000553,-!p1@PGR!1.17!13.83!PGR;;chr11:129245526..129245553,+!p1@BARX2!1.16!13.43!BARX2;;chr6:126070769..126070801,+!p1@HEY2!1.15!15.06!HEY2;;chr1:170633058..170633084,+!p5@PRRX1!1.15!13.02!PRRX1;;chrX:84498989..84499003,+!p1@ZNF711!1.14!17.50!ZNF711;;chr8:106330656..106330684,+!p1@ZFPM2!1.13!32.96!ZFPM2;;chr12:24715376..24715432,-!p1@SOX5!1.13!15.87!SOX5;;chr1:164528616..164528660,+!p5@PBX1!1.12!24.82!PBX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.75!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.43!PRRX1;;chr3:114819124..114819200,-!p3@ZBTB20!1.11!27.67!ZBTB20;;chr1:170632285..170632309,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NF10;;chr11:61520075..61520136,+!p1@C11orf9!0.43!4.48!C11orf9;;chr9:14314106..14314119,-!p5@NFIB!0.43!3.66!NFIB;;chr8:28243813..28243839,-!p4@ZNF395!0.43!3.66!ZNF395;;chr2:85980951..85981004,+!p1@ATOH8!0.43!3.26!ATOH8;;chr1:61547811..61547837,+!p7@NFIA!0.43!2.85!NFIA;;chr3:168865194..168865245,-!p3@MECOM!0.43!2.44!MECOM;;chr19:19932513..19932569,-!p1@ZNF506!0.42!45.17!ZNF506;;chr19:21264991..21265026,+!p1@ZNF714!0.42!15.06!ZNF714;;chr21:27107259..27107299,+!p1@GABPA!0.42!13.43!GABPA;;chr6:43139041..43139094,+!p3@SRF!0.42!13.02!SRF;;chr8:124286775..124286860,-!p2@ZHX1!0.42!9.77!ZHX1;;chr7:138666053..138666146,-!p1@KIAA1549!0.42!9.36!KIAA1549;;chr19:11959532..11959593,+!p1@ZNF439!0.42!8.54!ZNF439;;chr21:27107726..27107772,+!p4@GABPA!0.42!6.92!GABPA;;chr13:74708411..74708436,-!p3@KLF12!0.42!6.51!KLF12;;chr19:20188776..20188826,+!p1@ZNF90!0.42!5.70!ZNF90;;chr4:146402843..146402864,+!p3@SMAD1!0.42!4.07!SMAD1;;chr2:214016314..214016343,-!p2@IKZF2!0.42!3.26!IKZF2;;chr6:10412600..10412637,-!p1@TFAP2A!0.42!3.26!TFAP2A;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.42!2.44!ZNF700;;chr10:31607702..31607755,+!p3@ZEB1!0.42!2.03!ZEB1;;chr10:70320115..70320126,+!p3@TET1!0.42!1.63!TET1;;chr11:101000524..101000535,-!p3@PGR!0.42!1.63!PGR;;chr11:125034586..125034604,+!p3@PKNOX2!0.42!1.63!PKNOX2;;chr11:16629261..16629284,-!p1@SOX6!0.42!1.63!SOX6;;chr11:46299443..46299459,+!p4@CREB3L1!0.42!1.63!CREB3L1;;chr11:47400062..47400077,-!p2@SPI1!0.42!1.63!SPI1;;chr12:115121770..115121781,-!p4@TBX3!0.42!1.63!TBX3;;chr12:26277994..26278001,-!p6@BHLHE41!0.42!1.63!BHLHE41;;chr12:53625846..53625861,-!p6@RARG!0.42!1.63!RARG;;chr12:54378923..54378966,+!p1@HOXC10!0.42!1.63!HOXC10;;chr12:57853634..57853662,+!p2@GLI1!0.42!1.63!GLI1;;chr13:37494306..37494324,-!p4@SMAD9!0.42!1.63!SMAD9;;chr13:45150455..45150472,-!p8@TSC22D1!0.42!1.63!TSC22D1;;chr14:74256787..74256858,-!p6@C14orf43!0.42!1.63!C14orf43;;chr16:79634447..79634462,-!p8@MAF!0.42!1.63!MAF;;chr17:36105042..36105060,-!p1@HNF1B!0.42!1.63!HNF1B;;chr17:46655672..46655697,-!p3@HOXB4!0.42!1.63!HOXB4;;chr17:46675558..46675577,-!p2@HOXB6!0.42!1.63!HOXB6;;chr18:19749353..19749367,+!p4@GATA6!0.42!1.63!GATA6;;chr18:42646649..42646652,+!p9@SETBP1!0.42!1.63!SETBP1;;chr18:52894476..52894484,-!p41@TCF4!0.42!1.63!TCF4;;chr18:52969813..52969823,-!p67@TCF4!0.42!1.63!TCF4;;chr18:52989447..52989460,-!p50@TCF4!0.42!1.63!TCF4;;chr18:53068982..53068993,-!p20@TCF4!0.42!1.63!TCF4;;chr18:53177899..53177918,-!p33@TCF4!0.42!1.63!TCF4;;chr18:53177984..53178004,-!p17@TCF4!0.42!1.63!TCF4;;chr19:12267492..12267505,-!p2@ZNF625,p3@ZNF20!0.42!1.63!ZNF625;;chr19:13135582..13135600,+!p3@NFIX!0.42!1.63!NFIX;;chr19:13136057..13136085,+!p11@NFIX!0.42!1.63!NFIX;;chr5:158527139..158527161,-!p5@EBF1!0.42!1.63!EBF1;;chr6:152128371..152128382,+!p14@ESR1!0.42!1.63!ESR1;;chr6:34524049..34524089,-!p2@SPDEF!0.42!1.63!SPDEF;;chr7:114054864..114054876,+!p11@FOXP2!0.42!1.63!FOXP2;;chr7:27170359..27170381,-!p1@HOXA4!0.42!1.63!HOXA4;;chr7:27195867..27195893,-!p3@HOXA7!0.42!1.63!HOXA7;;chr7:27219849..27219867,-!p6@HOXA10!0.42!1.63!HOXA10;;chr7:42276771..42276782,-!p4@GLI3!0.42!1.63!GLI3;;chr7:50344289..50344323,+!p1@IKZF1!0.42!1.63!IKZF1;;chr7:96634908..96634923,+!p4@DLX6!0.42!1.63!DLX6;;chr8:81787006..81787031,-!p2@ZNF704!0.42!1.63!ZNF704;;chr8:93029520..93029534,-!p18@RUNX1T1!0.42!1.63!RUNX1T1;;chr2:100759010..100759035,-!p1@AFF3!0.42!1.63!AFF3;;chr2:10091922..10091935,+!p3@GRHL1!0.42!1.63!GRHL1;;chr2:176972000..176972025,+!p4@HOXD11!0.42!1.63!HOXD11;;chr2:176973528..176973535,+!p9@HOXD10!0.42!1.63!HOXD10;;chr2:177001098..177001101,+!p9@HOXD3!0.42!1.63!HOXD3;;chr2:66666432..66666462,+!p7@MEIS1!0.42!1.63!MEIS1;;chr2:95963052..95963106,+!p1@KCNIP3!0.42!1.63!KCNIP3;;chr3:107243213..107243223,+!p11@BBX!0.42!1.63!BBX;;chr3:111314230..111314241,-!p2@ZBED2!0.42!1.63!ZBED2;;chr3:114173558..114173571,-!p19@ZBTB20!0.42!1.63!ZBTB20;;chr3:114173654..114173696,-!p12@ZBTB20!0.42!1.63!ZBTB20;;chr3:114343039..114343085,-!p8@ZBTB20!0.42!1.63!ZBTB20;;chr3:138665760..138665772,-!p3@FOXL2!0.42!1.63!FOXL2;;chr3:168864936..168864953,-!p8@MECOM!0.42!1.63!MECOM;;chr3:168865364..168865376,-!p11@MECOM!0.42!1.63!MECOM;;chr3:181429704..181429722,+!p1@SOX2!0.42!1.63!SOX2;;chr3:22414187..22414230,-!p6@ZNF385D!0.42!1.63!ZNF385D;;chr3:71180051..71180085,-!p21@FOXP1!0.42!1.63!FOXP1;;chr4:109089095..109089144,-!p6@LEF1!0.42!1.63!LEF1;;chr4:109089573..109089585,-!p8@LEF1!0.42!1.63!LEF1;;chr4:57522513..57522548,-!p4@HOPX!0.42!1.63!HOPX;;chr19:38183166..38183184,-!p3@ZNF781!0.42!1.63!ZNF781;;chr19:44860847..44860861,-!p4@ZFP112,p4@ZNF285!0.42!1.63!ZFP112;;chr19:58545454..58545498,+!p1@ZSCAN1!0.42!1.63!ZSCAN1;;chr1:10856639..10856662,-!p2@CASZ1!0.42!1.63!CASZ1;;chr1:10856665..10856683,-!p4@CASZ1!0.42!1.63!CASZ1;;chr1:170632477..170632506,+!p6@PRRX1!0.42!1.63!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.42!1.63!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.42!1.63!PRRX1;;chr1:40105347..40105358,-!p2@HEYL!0.42!1.63!HEYL;;chr1:8585919..8585943,-!p18@RERE!0.42!1.63!RERE;;chr20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@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10055-101H1
 |is_a=EFO:0002091;;FF:0010055
 |is_obsolete=
-|library_ids=CNhs11763
+|library_id=CNhs11763
+|library_id_phase_based=2:CNhs11763
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10055
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10055
 |name=uterus, fetal, donor1
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11763,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 87: / Line 100: @@
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS008647
-|accession_numbers=DRX008757;DRR009629;DRZ001054;DRZ002439;CAGE
-|library_id=CNhs11763
 }}

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Latest revision as of 12:18, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0