FF:11461-119B3: Difference between revisions

Latest revision as of 18:02, 4 June 2020

Name:	Bronchial Epithelial Cell, donor6
Species:	Human (Homo sapiens)
Library ID:	CNhs12062
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	45 years old adult
sex	male
age	45
cell type	epithelial cell of lung, bronchial
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1217
catalog number	CA502-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005825

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12062		CAGE		DRX008124		DRR008996

Accession ID Hg19

Library id		BAM		CTSS
CNhs12062		DRZ000421		DRZ001806

Accession ID Hg38

Library id		BAM		CTSS
CNhs12062		DRZ011771		DRZ013156

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0602
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.237
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.137
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0134
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.282
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0351
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.13
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.672
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.161
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.237
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.558
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.044
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0602
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.555
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.117
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.137
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.137
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12062

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.997
MA0003.1	MA0003.1	0.421
MA0004.1	MA0004.1	0.533
MA0006.1	MA0006.1	0.146
MA0007.1	MA0007.1	0.209
MA0009.1	MA0009.1	0.198
MA0014.1	MA0014.1	0.423
MA0017.1	MA0017.1	0.137
MA0018.2	MA0018.2	0.197
MA0019.1	MA0019.1	0.608
MA0024.1	MA0024.1	0.00499
MA0025.1	MA0025.1	0.446
MA0027.1	MA0027.1	0.425
MA0028.1	MA0028.1	0.0564
MA0029.1	MA0029.1	0.26
MA0030.1	MA0030.1	0.969
MA0031.1	MA0031.1	0.0757
MA0035.2	MA0035.2	0.266
MA0038.1	MA0038.1	0.528
MA0039.2	MA0039.2	0.00513
MA0040.1	MA0040.1	0.666
MA0041.1	MA0041.1	0.346
MA0042.1	MA0042.1	0.978
MA0043.1	MA0043.1	0.354
MA0046.1	MA0046.1	0.351
MA0047.2	MA0047.2	0.0929
MA0048.1	MA0048.1	0.665
MA0050.1	MA0050.1	3.69934e-11
MA0051.1	MA0051.1	5.18939e-6
MA0052.1	MA0052.1	0.853
MA0055.1	MA0055.1	0.0107
MA0057.1	MA0057.1	0.0965
MA0058.1	MA0058.1	0.312
MA0059.1	MA0059.1	0.619
MA0060.1	MA0060.1	0.239
MA0061.1	MA0061.1	0.779
MA0062.2	MA0062.2	0.0679
MA0065.2	MA0065.2	0.00905
MA0066.1	MA0066.1	0.116
MA0067.1	MA0067.1	0.231
MA0068.1	MA0068.1	0.0323
MA0069.1	MA0069.1	0.55
MA0070.1	MA0070.1	0.952
MA0071.1	MA0071.1	0.937
MA0072.1	MA0072.1	0.963
MA0073.1	MA0073.1	0.784
MA0074.1	MA0074.1	0.98
MA0076.1	MA0076.1	0.262
MA0077.1	MA0077.1	0.951
MA0078.1	MA0078.1	0.616
MA0079.2	MA0079.2	0.28
MA0080.2	MA0080.2	0.0562
MA0081.1	MA0081.1	0.229
MA0083.1	MA0083.1	0.467
MA0084.1	MA0084.1	0.0817
MA0087.1	MA0087.1	0.409
MA0088.1	MA0088.1	0.435
MA0090.1	MA0090.1	0.0656
MA0091.1	MA0091.1	0.83
MA0092.1	MA0092.1	0.934
MA0093.1	MA0093.1	0.466
MA0099.2	MA0099.2	6.66228e-14
MA0100.1	MA0100.1	0.0475
MA0101.1	MA0101.1	0.725
MA0102.2	MA0102.2	0.55
MA0103.1	MA0103.1	3.67011e-7
MA0104.2	MA0104.2	0.851
MA0105.1	MA0105.1	0.797
MA0106.1	MA0106.1	7.77906e-8
MA0107.1	MA0107.1	0.587
MA0108.2	MA0108.2	0.191
MA0111.1	MA0111.1	0.811
MA0112.2	MA0112.2	0.0237
MA0113.1	MA0113.1	0.312
MA0114.1	MA0114.1	0.07
MA0115.1	MA0115.1	0.628
MA0116.1	MA0116.1	0.121
MA0117.1	MA0117.1	0.596
MA0119.1	MA0119.1	0.275
MA0122.1	MA0122.1	0.553
MA0124.1	MA0124.1	0.611
MA0125.1	MA0125.1	0.664
MA0131.1	MA0131.1	0.41
MA0135.1	MA0135.1	0.0334
MA0136.1	MA0136.1	0.563
MA0137.2	MA0137.2	0.00988
MA0138.2	MA0138.2	0.096
MA0139.1	MA0139.1	0.366
MA0140.1	MA0140.1	0.923
MA0141.1	MA0141.1	0.0801
MA0142.1	MA0142.1	0.221
MA0143.1	MA0143.1	0.771
MA0144.1	MA0144.1	0.632
MA0145.1	MA0145.1	0.0299
MA0146.1	MA0146.1	0.0237
MA0147.1	MA0147.1	0.994
MA0148.1	MA0148.1	0.0548
MA0149.1	MA0149.1	0.122
MA0150.1	MA0150.1	0.109
MA0152.1	MA0152.1	0.147
MA0153.1	MA0153.1	0.19
MA0154.1	MA0154.1	0.222
MA0155.1	MA0155.1	0.322
MA0156.1	MA0156.1	0.6
MA0157.1	MA0157.1	0.0355
MA0159.1	MA0159.1	0.0768
MA0160.1	MA0160.1	0.302
MA0162.1	MA0162.1	0.165
MA0163.1	MA0163.1	0.404
MA0164.1	MA0164.1	0.885
MA0258.1	MA0258.1	0.122
MA0259.1	MA0259.1	0.803

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12062

Novel motif	Logo	P-value
1	1	0.579
10	10	0.976
100	100	0.737
101	101	0.00153
102	102	0.0949
103	103	0.151
104	104	0.392
105	105	0.0888
106	106	0.0502
107	107	0.0716
108	108	0.44
109	109	5.50129e-4
11	11	0.0631
110	110	0.0716
111	111	0.502
112	112	0.243
113	113	0.433
114	114	0.349
115	115	0.163
116	116	0.274
117	117	0.174
118	118	0.908
119	119	0.142
12	12	0.32
120	120	0.0762
121	121	0.741
122	122	0.07
123	123	0.379
124	124	0.132
125	125	0.848
126	126	0.495
127	127	0.0344
128	128	0.612
129	129	0.121
13	13	0.0349
130	130	0.773
131	131	0.427
132	132	0.489
133	133	5.7783e-4
134	134	0.189
135	135	0.976
136	136	0.0753
137	137	0.0702
138	138	0.704
139	139	0.233
14	14	0.736
140	140	0.0489
141	141	0.421
142	142	0.0492
143	143	0.508
144	144	0.233
145	145	0.368
146	146	0.00567
147	147	0.0425
148	148	0.18
149	149	0.191
15	15	0.893
150	150	0.349
151	151	0.494
152	152	0.036
153	153	0.995
154	154	0.596
155	155	0.438
156	156	0.305
157	157	0.701
158	158	0.388
159	159	0.597
16	16	0.0202
160	160	0.313
161	161	0.395
162	162	0.39
163	163	0.699
164	164	0.271
165	165	0.235
166	166	0.13
167	167	0.264
168	168	0.768
169	169	0.0502
17	17	0.14
18	18	0.0569
19	19	0.404
2	2	0.175
20	20	0.717
21	21	0.476
22	22	0.187
23	23	0.58
24	24	0.109
25	25	0.81
26	26	0.143
27	27	0.448
28	28	0.762
29	29	0.238
3	3	0.582
30	30	0.0711
31	31	0.696
32	32	0.676
33	33	0.128
34	34	0.808
35	35	0.663
36	36	0.738
37	37	0.166
38	38	0.317
39	39	0.23
4	4	0.531
40	40	0.00877
41	41	0.659
42	42	0.966
43	43	0.446
44	44	0.582
45	45	0.205
46	46	0.411
47	47	0.181
48	48	0.069
49	49	0.988
5	5	0.66
50	50	0.522
51	51	0.761
52	52	0.491
53	53	0.386
54	54	0.575
55	55	0.929
56	56	0.376
57	57	0.532
58	58	0.988
59	59	0.056
6	6	0.186
60	60	0.23
61	61	0.616
62	62	0.898
63	63	0.259
64	64	0.239
65	65	0.161
66	66	0.734
67	67	0.599
68	68	0.809
69	69	0.141
7	7	0.527
70	70	0.00644
71	71	0.262
72	72	0.956
73	73	0.0127
74	74	0.0261
75	75	0.145
76	76	0.916
77	77	0.00456
78	78	0.0568
79	79	0.544
8	8	0.246
80	80	0.984
81	81	0.585
82	82	0.681
83	83	0.513
84	84	0.899
85	85	0.492
86	86	0.785
87	87	0.00589
88	88	0.473
89	89	0.0912
9	9	0.672
90	90	0.133
91	91	0.617
92	92	0.74
93	93	0.666
94	94	0.686
95	95	0.031
96	96	0.53
97	97	0.726
98	98	0.36
99	99	0.0205

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12062

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000015 human bronchial epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0002328 (bronchial epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000485 (simple columnar epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0004815 (lower respiratory tract epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002031 (epithelium of bronchus)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000015 (human bronchial epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008017
+|DRA_sample_Accession=CAGE@SAMD00005825
+|accession_numbers=CAGE;DRX008124;DRR008996;DRZ000421;DRZ001806;DRZ011771;DRZ013156
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005178,UBERON:0000485,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0004815,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002031,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0002328
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.34!218.89!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.13!149.01!IRF6;;chr11:34642612..34642646,+!p1@EHF!1.93!84.67!EHF;;chr1:6479968..6479986,-!p1@HES2!1.84!68.77!HES2;;chr5:134369905..134369972,-!p1@PITX1!1.80!92.81!PITX1;;chr1:209979411..209979433,-!p2@IRF6!1.76!56.94!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.75!62.49!BNC1;;chr6:10415276..10415341,-!p2@TFAP2A!1.66!54.72!TFAP2A;;chr6:34524093..34524135,-!p1@SPDEF!1.62!40.67!SPDEF;;chr17:7492684..7492778,-!p2@SOX15!1.60!79.13!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.58!56.57!ZNF385A;;chr3:189507432..189507459,+!p1@TP63!1.57!35.87!TP63;;chr6:10412600..10412637,-!p1@TFAP2A!1.54!55.46!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.53!36.98!ZNF385A;;chr2:46524897..46524911,+!p2@EPAS1!1.50!82.82!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.44!26.62!PITX1;;chr13:73633131..73633149,+!p1@KLF5!1.42!256.98!KLF5;;chr8:10588010..10588030,-!p1@SOX7!1.42!25.51!SOX7;;chr20:22565185..22565223,-!p3@FOXA2!1.42!25.14!FOXA2;;chr20:22565370..22565388,-!p2@FOXA2!1.32!19.97!FOXA2;;chr22:19748231..19748317,+!p1@TBX1!1.31!19.60!TBX1;;chr6:34524049..34524089,-!p2@SPDEF!1.31!19.60!SPDEF;;chr17:80797886..80797906,-!p1@ZNF750!1.31!19.23!ZNF750;;chr3:111314186..111314204,-!p1@ZBED2!1.28!18.12!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.24!141.62!PPP1R13L;;chr5:2751762..2751784,-!p1@IRX2!1.24!16.27!IRX2;;chr14:37131058..37131139,+!p1@PAX9!1.23!15.90!PAX9;;chr6:10415484..10415508,-!p3@TFAP2A!1.19!14.42!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!1.19!14.42!SPDEF;;chr14:38064429..38064486,-!p1@FOXA1!1.16!13.31!FOXA1;;chr1:24645832..24645853,+!p1@GRHL3!1.16!13.31!GRHL3;;chr14:90085820..90085840,-!p6@FOXN3!1.12!12.20!FOXN3;;chr20:22564895..22564910,-!p1@FOXA2!1.11!11.83!FOXA2;;chr17:8027418..8027432,-!p1@HES7!1.10!11.46!HES7;;chr6:106546808..106546833,+!p3@PRDM1!1.07!13.68!PRDM1;;chr15:101069113..101069169,-!p1@CERS3!1.07!10.72!CERS3;;chr6:1312325..1312340,+!p1@FOXQ1!1.01!15.16!FOXQ1;;chr6:10412576..10412599,-!p5@TFAP2A!1.01!9.24!TFAP2A;;chr11:34642656..34642667,+!p2@EHF!1.01!9.24!EHF;;chr14:37051798..37051831,-!p1@NKX2-8!0.99!8.87!NKX2-8;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.29!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.98!8.50!OTX1;;chr1:24645921..24645973,+!p2@GRHL3!0.98!8.50!GRHL3;;chr1:154975258..154975330,+!p1@ZBTB7B!0.97!31.80!ZBTB7B;;chr2:122042770..122042785,-!p1@TFCP2L1!0.96!8.13!TFCP2L1;;chr4:57547454..57547469,-!p1@HOPX!0.94!7.76!HOPX;;chr8:49833948..49833973,-!p2@SNAI2!0.89!45.48!SNAI2;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.35!ETV4;;chr2:70142232..70142251,+!p1@MXD1!0.88!39.19!MXD1;;chr17:46132044..46132080,+!p4@NFE2L1!0.88!6.66!NFE2L1;;chr8:102504651..102504683,+!p1@GRHL2!0.88!6.66!GRHL2;;chr17:41623009..41623053,-!p4@ETV4!0.87!10.72!ETV4;;chr21:36260773..36260804,-!p7@RUNX1!0.87!8.87!RUNX1;;chr2:46524878..46524891,+!p3@EPAS1!0.86!11.46!EPAS1;;chr3:189507460..189507471,+!p3@TP63!0.86!6.29!TP63;;chr1:209979375..209979386,-!p4@IRF6!0.86!6.29!IRF6;;chr1:209979449..209979460,-!p3@IRF6!0.86!6.29!IRF6;;chr11:65554528..65554546,+!p1@OVOL1!0.86!6.29!OVOL1;;chr6:34204672..34204692,+!p1@HMGA1!0.85!732.85!HMGA1;;chr11:120107344..120107351,+!p1@POU2F3!0.85!7.40!POU2F3;;chr1:154975229..154975247,+!p6@ZBTB7B!0.84!5.92!ZBTB7B;;chr1:50889155..50889173,-!p2@DMRTA2!0.82!5.55!DMRTA2;;chr5:2751785..2751808,-!p2@IRX2!0.82!5.55!IRX2;;chr12:66218598..66218645,+!p2@HMGA2!0.81!26.99!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.81!18.49!TWIST2;;chr19:42636586..42636607,-!p1@POU2F2!0.81!15.90!POU2F2;;chr8:128748308..128748324,+!p2@MYC!0.80!160.84!MYC;;chr12:27485762..27485776,+!p3@ARNTL2!0.80!15.16!ARNTL2;;chr6:10413188..10413249,-!p7@TFAP2A!0.79!5.18!TFAP2A;;chr3:111314230..111314241,-!p2@ZBED2!0.79!5.18!ZBED2;;chr17:45928443..45928473,-!p2@SP6!0.79!5.18!SP6;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!66.19!ZC3H12A;;chr2:239148671..239148686,-!p1@HES6!0.77!19.23!HES6;;chr12:53625966..53626012,-!p2@RARG!0.76!13.68!RARG;;chr11:34645791..34645836,+!p3@EHF!0.76!4.81!EHF;;chr6:106546731..106546755,+!p5@PRDM1!0.76!4.81!PRDM1;;chr20:18038521..18038571,-!p1@OVOL2!0.76!4.81!OVOL2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.75!364.95!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.75!135.33!FOSL1;;chrX:107018969..107019024,-!p6@TSC22D3!0.75!6.66!TSC22D3;;chr17:41623075..41623101,-!p9@ETV4!0.75!5.55!ETV4;;chr6:34204921..34204939,+!p3@HMGA1!0.74!152.34!HMGA1;;chr12:48298765..48298783,-!p2@VDR!0.74!9.98!VDR;;chr1:24646263..24646277,+!p4@GRHL3!0.74!4.44!GRHL3;;chr6:10419768..10419819,-!p6@TFAP2A!0.74!4.44!TFAP2A;;chr13:73636252..73636307,+!p2@KLF5!0.73!5.18!KLF5;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.34!ETV4;;chr2:239756739..239756755,+!p2@TWIST2!0.72!7.76!TWIST2;;chr8:49833978..49833996,-!p1@SNAI2!0.71!97.25!SNAI2;;chr14:21566731..21566836,-!p1@ZNF219!0.71!49.92!ZNF219;;chr12:66218003..66218018,+!p9@HMGA2!0.71!5.18!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.71!5.18!ETV4;;chr11:64073022..64073056,+!p1@ESRRA!0.70!53.98!ESRRA;;c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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002328;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000485;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
 |ffid_belonging_in_development=CL:0000223
 |fonse_cell_line=
@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11461-119B3
 |is_a=EFO:0002091;;FF:0000015
 |is_obsolete=
-|library_ids=CNhs12062
+|library_id=CNhs12062
+|library_id_phase_based=2:CNhs12062
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11461
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11461
 |name=Bronchial Epithelial Cell, donor6
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12062,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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-}} {{DRAAccessionNumbers
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 }}

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FF:11461-119B3: Difference between revisions

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Latest revision as of 18:02, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0