FF:10851-111F5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005438 | ||
|accession_numbers=CAGE;DRX007940;DRR008812;DRZ000237;DRZ001622 | |accession_numbers=CAGE;DRX007940;DRR008812;DRZ000237;DRZ001622;DRZ011587;DRZ012972 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!2.01!102.02!FOXS1;;chr6:10415276..10415341,-!p2@TFAP2A!1.71!60.76!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.59!61.44!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.37!25.84!PPARG;;chr6:1389789..1389821,+!p1@FOXF2!1.30!25.84!FOXF2;;chr15:83953397..83953425,-!p1@BNC1!1.30!21.76!BNC1;;chr6:10412392..10412409,-!p4@TFAP2A!1.29!21.31!TFAP2A;;chr21:38071430..38071456,+!p1@SIM2!1.29!18.59!SIM2;;chr12:54332608..54332636,+!p1@HOXC13!1.19!14.51!HOXC13;;chr17:46682321..46682362,-!p1@HOXB6!1.16!13.38!HOXB6;;chr2:172949484..172949522,+!p1@DLX1!1.15!13.15!DLX1;;chr11:61520075..61520136,+!p1@C11orf9!1.11!25.16!C11orf9;;chr18:19749541..19749557,+!p1@GATA6!1.10!36.50!GATA6;;chr10:8096772..8096787,+!p2@GATA3!1.10!13.60!GATA3;;chr5:50679228..50679288,+!p1@ISL1!1.08!11.11!ISL1;;chr7:35293685..35293718,-!p1@TBX20!1.08!11.11!TBX20;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.66!HOXC5;;chr8:72756667..72756736,-!p2@MSC!1.06!16.55!MSC;;chr8:72756063..72756125,-!p1@MSC!1.05!21.08!MSC;;chr5:134369905..134369972,-!p1@PITX1!1.04!15.42!PITX1;;chr12:80084167..80084197,-!p5@PAWR!1.03!23.35!PAWR;;chr8:60031619..60031676,-!p1@TOX!1.03!21.31!TOX;;chr11:46299199..46299233,+!p1@CREB3L1!1.02!49.88!CREB3L1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.01!83.20!PPP1R13L;;chr2:172967621..172967637,-!p1@DLX2!1.01!24.94!DLX2;;chr12:26277817..26277863,-!p2@BHLHE41!0.99!12.02!BHLHE41;;chr3:169381420..169381535,-!p1@MECOM!0.99!10.43!MECOM;;chr7:19157248..19157268,-!p1@TWIST1!0.98!24.48!TWIST1;;chr20:42295745..42295765,+!p1@MYBL2!0.97!141.24!MYBL2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.97!86.37!GLIS2;;chr12:26277956..26277980,-!p1@BHLHE41!0.97!30.83!BHLHE41;;chr20:50721803..50721857,-!p2@ZFP64!0.97!13.38!ZFP64;;chr5:172662197..172662216,-!p1@NKX2-5!0.97!8.39!NKX2-5;;chr12:124873357..124873401,-!p1@NCOR2!0.96!96.35!NCOR2;;chr12:80084737..80084763,-!p3@PAWR!0.96!31.06!PAWR;;chr12:54393880..54393962,+!p1@HOXC9!0.96!8.16!HOXC9;;chr3:138665937..138665968,-!p1@FOXL2!0.93!7.48!FOXL2;;chr7:19157043..19157088,-!p2@TWIST1!0.92!19.04!TWIST1;;chr12:80085061..80085119,-!p6@PAWR!0.92!11.79!PAWR;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.25!KDM5D;;chr6:1312325..1312340,+!p1@FOXQ1!0.91!11.79!FOXQ1;;chr12:26277929..26277955,-!p3@BHLHE41!0.91!10.20!BHLHE41;;chr8:72756637..72756664,-!p3@MSC!0.91!8.16!MSC;;chr20:42295713..42295738,+!p2@MYBL2!0.90!42.85!MYBL2;;chr17:46687959..46688007,-!p2@HOXB7!0.90!9.75!HOXB7;;chr15:67418119..67418162,+!p5@SMAD3!0.90!7.71!SMAD3;;chr3:25470156..25470227,+!p2@RARB!0.90!7.03!RARB;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.80!TFAP2A;;chr12:80084137..80084165,-!p10@PAWR!0.88!8.61!PAWR;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.88!6.57!SEBOX;;chr7:27153454..27153469,-!p2@HOXA3!0.88!6.57!HOXA3;;chr8:72756267..72756296,-!p4@MSC!0.87!9.75!MSC;;chr10:8096631..8096660,+!p1@GATA3!0.87!7.93!GATA3;;chr3:170076314..170076334,+!p2@SKIL!0.85!8.16!SKIL;;chr16:86544113..86544145,+!p1@FOXF1!0.84!7.48!FOXF1;;chr11:65667846..65667868,-!p1@FOSL1!0.83!163.91!FOSL1;;chr11:44331576..44331650,-!p1@ALX4!0.82!5.67!ALX4;;chr12:54394309..54394336,+!p2@HOXC9!0.82!5.67!HOXC9;;chr12:57853634..57853662,+!p2@GLI1!0.82!5.67!GLI1;;chr16:85932760..85932775,+!p1@IRF8!0.81!5.44!IRF8;;chr8:72756213..72756243,-!p5@MSC!0.79!6.80!MSC;;chr12:54402745..54402788,+!p1@HOXC8!0.79!5.21!HOXC8;;chr2:172967242..172967265,-!p2@DLX2!0.79!5.21!DLX2;;chr18:19749386..19749404,+!p2@GATA6!0.78!7.48!GATA6;;chr16:1429010..1429038,-!p5@UNKL!0.78!4.99!UNKL;;chr12:124873852..124873881,-!p3@NCOR2!0.77!32.42!NCOR2;;chr7:27835758..27835772,+!p3@TAX1BP1!0.77!6.80!TAX1BP1;;chr12:80084303..80084332,-!p1@PAWR!0.76!30.61!PAWR;;chr11:65667884..65667895,-!p2@FOSL1!0.76!20.18!FOSL1;;chr5:92918894..92918912,+!p2@NR2F1!0.76!16.78!NR2F1;;chr7:1577899..1577943,+!p3@MAFK!0.76!4.76!MAFK;;chr12:54332652..54332671,+!p2@HOXC13!0.76!4.76!HOXC13;;chr5:92918919..92918942,+!p1@NR2F1!0.75!22.44!NR2F1;;chr3:168864315..168864339,-!p2@MECOM!0.75!7.93!MECOM;;chr16:29818199..29818216,+!p11@MAZ!0.75!7.93!MAZ;;chr1:23885981..23886002,-!p1@ID3!0.74!884.83!ID3;;chr12:80084279..80084293,-!p8@PAWR!0.74!7.93!PAWR;;chr12:54332687..54332701,+!p3@HOXC13!0.74!4.53!HOXC13;;chr15:83953373..83953386,-!p2@BNC1!0.74!4.53!BNC1;;chr8:11561684..11561751,+!p1@GATA4!0.74!4.53!GATA4;;chr21:38071403..38071428,+!p2@SIM2!0.74!4.53!SIM2;;chr7:77428149..77428220,+!p1@PHTF2!0.73!49.20!PHTF2;;chr15:67418047..67418093,+!p4@SMAD3!0.73!5.67!SMAD3;;chr7:26191809..26191890,+!p1@NFE2L3!0.72!23.35!NFE2L3;;chr12:80083544..80083558,-!p13@PAWR!0.72!5.44!PAWR;;chr5:172662230..172662241,-!p3@NKX2-5!0.72!4.31!NKX2-5;;chr5:2751762..2751784,-!p1@IRX2!0.72!4.31!IRX2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.31!TFAP2A;;chr6:1389989..1390019,+!p2@FOXF2!0.72!4.31!FOXF2;;chr2:113994526..113994556,-!p3@PAX8!0.72!4.31!PAX8;;chr2:239756739..239756755,+!p2@TWIST2!0.71!7.48!TWIST2;;chr7:27788205..27788255,+!p2@TAX1BP1!0.71!6.80!TAX1BP1;;chr6:10412477..10412490,-!p10@TFAP2A!0.71!4.08!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.29!KLF5;;chr8:60031682..60031710,-!p2@TOX!0.69!6.80!TOX;;chr12:54447599..54447630,+!p3@HOXC4!0.69!4.99!HOXC4;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.53!TCF4;;chr5:3595977..3595999,+!p1@IRX1!0.69!3.85!IRX1;;chr20:30193083..30193098,+!p1@ID1!0.68!356.38!ID1;;chr6:19837592..19837621,+!p1@ID4!0.68!26.30!ID4;;chr17:46622114..46622138,-!p4@HOXB2!0.68!6.12!HOXB2;;chr8:72756023..72756055,-!p6@MSC!0.67!4.76!MSC;;chr6:1389824..1389840,+!p3@FOXF2!0.67!3.63!FOXF2;;chr15:80843484..80843499,+!p5@ARNT2!0.67!3.63!ARNT2;;chr12:80084120..80084136,-!p15@PAWR!0.67!3.63!PAWR;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.63!ZFY;;chr16:29818160..29818188,+!p6@MAZ!0.66!19.04!MAZ;;chr8:67525443..67525459,-!p2@MYBL1!0.66!5.67!MYBL1;;chr10:48355030..48355090,+!p1@ZNF488!0.66!4.76!ZNF488;;chr20:32274179..32274213,-!p1@E2F1!0.65!26.75!E2F1;;chr2:239756671..239756732,+!p1@TWIST2!0.65!12.70!TWIST2;;chr1:45805872..45805900,+!p2@TOE1!0.65!9.29!TOE1;;chr17:46622070..46622109,-!p1@HOXB2!0.65!8.61!HOXB2;;chr12:26278008..26278024,-!p4@BHLHE41!0.65!4.31!BHLHE41;;chr12:3068544..3068597,+!p1@TEAD4!0.64!23.80!TEAD4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.64!3.40!HOXC5;;chr5:3595934..3595957,+!p2@IRX1!0.64!3.40!IRX1;;chr4:299227..299272,-!p1@ZNF732!0.64!3.40!ZNF732;;chr12:2986275..2986363,-!p1@FOXM1!0.63!38.54!FOXM1;;chr6:126240380..126240430,+!p2@NCOA7!0.63!9.52!NCOA7;;chr12:57853565..57853579,+!p1@GLI1!0.62!3.40!GLI1;;chr1:197886461..197886558,+!p1@LHX9!0.62!3.17!LHX9;;chr7:101917407..101917443,+!p3@CUX1!0.62!3.17!CUX1;;chr8:72756380..72756427,-!p8@MSC!0.62!3.17!MSC;;chr12:3069037..3069119,+!p2@TEAD4!0.61!12.24!TEAD4;;chr1:200379104..200379128,-!p2@ZNF281!0.61!8.61!ZNF281;;chr3:25469724..25469773,+!p1@RARB!0.61!4.76!RARB;;chr17:46688334..46688385,-!p1@HOXB7!0.61!4.76!HOXB7;;chr7:27779729..27779819,+!p1@TAX1BP1!0.60!229.20!TAX1BP1;;chr17:41277372..41277418,-!p1@BRCA1!0.60!12.70!BRCA1;;chr15:37392094..37392116,-!p6@MEIS2!0.60!3.85!MEIS2;;chr6:1612300..1612324,+!p3@FOXC1!0.60!2.95!FOXC1;;chr2:176994408..176994492,+!p1@HOXD8!0.60!2.95!HOXD8;;chr12:54447637..54447659,+!p4@HOXC4!0.60!2.95!HOXC4;;chr14:37131058..37131139,+!p1@PAX9!0.60!2.95!PAX9;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.25!GLI2;;chr8:23540441..23540466,-!p1@NKX3-1!0.59!6.57!NKX3-1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.58!16.10!GLIS2;;chr11:46299539..46299620,+!p2@CREB3L1!0.58!5.21!CREB3L1;;chr3:168865194..168865245,-!p3@MECOM!0.58!3.85!MECOM;;chr12:80084768..80084821,-!p2@PAWR!0.57!23.12!PAWR;;chr1:35656508..35656584,-!p2@SFPQ!0.57!10.20!SFPQ;;chr1:35657108..35657135,-!p5@SFPQ!0.57!5.89!SFPQ;;chr12:80085255..80085284,-!p9@PAWR!0.57!4.31!PAWR;;chr15:80696703..80696754,+!p1@ARNT2!0.57!3.85!ARNT2;;chr15:67418177..67418204,+!p9@SMAD3!0.57!2.72!SMAD3;;chr1:201979703..201979721,+!p2@ELF3!0.57!2.72!ELF3;;chr5:139492456..139492489,+!p7@PURA!0.57!2.72!PURA;;chr11:16627528..16627550,-!p7@SOX6!0.57!2.72!SOX6;;chr3:69915385..69915438,+!p3@MITF!0.57!2.72!MITF;;chr6:21593973..21593988,+!p1@SOX4!0.56!118.57!SOX4;;chr16:1429627..1429662,-!p2@UNKL!0.56!9.07!UNKL;;chr19:20188776..20188826,+!p1@ZNF90!0.56!8.39!ZNF90;;chrX:66763856..66763896,+!p1@AR!0.56!4.08!AR;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.40!TBX18;;chr19:6110474..6110551,-!p1@RFX2!0.55!19.27!RFX2;;chr12:77459306..77459365,-!p1@E2F7!0.54!39.45!E2F7;;chr12:27485785..27485816,+!p1@ARNTL2!0.54!21.31!ARNTL2;;chr8:77593474..77593612,+!p1@ZFHX4!0.54!12.70!ZFHX4;;chr6:20402102..20402152,+!p1@E2F3!0.54!12.47!E2F3;;chr18:19749517..19749531,+!p3@GATA6!0.54!4.99!GATA6;;chr1:221052776..221052799,+!p1@HLX!0.54!4.99!HLX;;chr11:120107344..120107351,+!p1@POU2F3!0.54!3.17!POU2F3;;chr12:54394059..54394088,+!p3@HOXC9!0.54!2.49!HOXC9;;chr7:27142290..27142310,-!p1@HOXA2!0.54!2.49!HOXA2;;chr8:60031934..60031986,-!p6@TOX!0.54!2.49!TOX;;chr2:172950227..172950249,+!p2@DLX1!0.54!2.49!DLX1;;chr6:31126291..31126399,+!p1@TCF19!0.53!29.02!TCF19;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.53!13.60!TAL1;;chr3:12329397..12329433,+!p2@PPARG!0.53!6.35!PPARG;;chr9:99180617..99180658,-!p1@ZNF367!0.53!6.12!ZNF367;;chr2:200323414..200323455,-!p1@SATB2!0.53!5.89!SATB2;;chr11:8102846..8102892,+!p1@TUB!0.53!3.63!TUB;;chr10:8095593..8095625,+!p3@GATA3!0.53!2.95!GATA3;;chr3:114343768..114343822,-!p1@ZBTB20!0.52!12.70!ZBTB20;;chr7:27135591..27135658,-!p1@HOXA1!0.52!5.21!HOXA1;;chr6:45390077..45390105,+!p9@RUNX2!0.52!3.17!RUNX2;;chr1:164528410..164528428,+!p1@PBX1!0.51!21.54!PBX1;;chr21:27107465..27107557,+!p3@GABPA!0.51!10.20!GABPA;;chr12:53625966..53626012,-!p2@RARG!0.51!7.25!RARG;;chr5:158526917..158526932,-!p1@EBF1!0.51!6.80!EBF1;;chr11:12696002..12696022,+!p2@TEAD1!0.51!6.57!TEAD1;;chrX:66763815..66763854,+!p2@AR!0.51!3.17!AR;;chr3:157823517..157823562,-!p1@SHOX2!0.51!2.49!SHOX2;;chr2:172967323..172967336,-!p4@DLX2!0.51!2.27!DLX2;;chr3:138665969..138665993,-!p2@FOXL2!0.51!2.27!FOXL2;;chr4:103423079..103423112,+!p4@NFKB1!0.51!2.27!NFKB1;;chr1:201979743..201979762,+!p1@ELF3!0.51!2.27!ELF3;;chr11:1662926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| 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AP2A;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.29!KLF5;;chr8:60031682..60031710,-!p2@TOX!0.69!6.80!TOX;;chr12:54447599..54447630,+!p3@HOXC4!0.69!4.99!HOXC4;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.53!TCF4;;chr5:3595977..3595999,+!p1@IRX1!0.69!3.85!IRX1;;chr20:30193083..30193098,+!p1@ID1!0.68!356.38!ID1;;chr6:19837592..19837621,+!p1@ID4!0.68!26.30!ID4;;chr17:46622114..46622138,-!p4@HOXB2!0.68!6.12!HOXB2;;chr8:72756023..72756055,-!p6@MSC!0.67!4.76!MSC;;chr6:1389824..1389840,+!p3@FOXF2!0.67!3.63!FOXF2;;chr15:80843484..80843499,+!p5@ARNT2!0.67!3.63!ARNT2;;chr12:80084120..80084136,-!p15@PAWR!0.67!3.63!PAWR;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.63!ZFY;;chr16:29818160..29818188,+!p6@MAZ!0.66!19.04!MAZ;;chr8:67525443..67525459,-!p2@MYBL1!0.66!5.67!MYBL1;;chr10:48355030..48355090,+!p1@ZNF488!0.66!4.76!ZNF488;;chr20:32274179..32274213,-!p1@E2F1!0.65!26.75!E2F1;;chr2:239756671..239756732,+!p1@TWIST2!0.65!12.70!TWIST2;;chr1:45805872..45805900,+!p2@TOE1!0.65!9.29!TOE1;;chr17:46622070..46622109,-!p1@HOXB2!0.65!8.61!HOXB2;;chr12:26278008..26278024,-!p4@BHLHE41!0.65!4.31!BHLHE41;;chr12:3068544..3068597,+!p1@TEAD4!0.64!23.80!TEAD4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.64!3.40!HOXC5;;chr5:3595934..3595957,+!p2@IRX1!0.64!3.40!IRX1;;chr4:299227..299272,-!p1@ZNF732!0.64!3.40!ZNF732;;chr12:2986275..2986363,-!p1@FOXM1!0.63!38.54!FOXM1;;chr6:126240380..126240430,+!p2@NCOA7!0.63!9.52!NCOA7;;chr12:57853565..57853579,+!p1@GLI1!0.62!3.40!GLI1;;chr1:197886461..197886558,+!p1@LHX9!0.62!3.17!LHX9;;chr7:101917407..101917443,+!p3@CUX1!0.62!3.17!CUX1;;chr8:72756380..72756427,-!p8@MSC!0.62!3.17!MSC;;chr12:3069037..3069119,+!p2@TEAD4!0.61!12.24!TEAD4;;chr1:200379104..200379128,-!p2@ZNF281!0.61!8.61!ZNF281;;chr3:25469724..25469773,+!p1@RARB!0.61!4.76!RARB;;chr17:46688334..46688385,-!p1@HOXB7!0.61!4.76!HOXB7;;chr7:27779729..27779819,+!p1@TAX1BP1!0.60!229.20!TAX1BP1;;chr17:41277372..41277418,-!p1@BRCA1!0.60!12.70!BRCA1;;chr15:37392094..37392116,-!p6@MEIS2!0.60!3.85!MEIS2;;chr6:1612300..1612324,+!p3@FOXC1!0.60!2.95!FOXC1;;chr2:176994408..176994492,+!p1@HOXD8!0.60!2.95!HOXD8;;chr12:54447637..54447659,+!p4@HOXC4!0.60!2.95!HOXC4;;chr14:37131058..37131139,+!p1@PAX9!0.60!2.95!PAX9;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.25!GLI2;;chr8:23540441..23540466,-!p1@NKX3-1!0.59!6.57!NKX3-1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.58!16.10!GLIS2;;chr11:46299539..46299620,+!p2@CREB3L1!0.58!5.21!CREB3L1;;chr3:168865194..168865245,-!p3@MECOM!0.58!3.85!MECOM;;chr12:80084768..80084821,-!p2@PAWR!0.57!23.12!PAWR;;chr1:35656508..35656584,-!p2@SFPQ!0.57!10.20!SFPQ;;chr1:35657108..35657135,-!p5@SFPQ!0.57!5.89!SFPQ;;chr12:80085255..80085284,-!p9@PAWR!0.57!4.31!PAWR;;chr15:80696703..80696754,+!p1@ARNT2!0.57!3.85!ARNT2;;chr15:67418177..67418204,+!p9@SMAD3!0.57!2.72!SMAD3;;chr1:201979703..201979721,+!p2@ELF3!0.57!2.72!ELF3;;chr5:139492456..139492489,+!p7@PURA!0.57!2.72!PURA;;chr11:16627528..16627550,-!p7@SOX6!0.57!2.72!SOX6;;chr3:69915385..69915438,+!p3@MITF!0.57!2.72!MITF;;chr6:21593973..21593988,+!p1@SOX4!0.56!118.57!SOX4;;chr16:1429627..1429662,-!p2@UNKL!0.56!9.07!UNKL;;chr19:20188776..20188826,+!p1@ZNF90!0.56!8.39!ZNF90;;chrX:66763856..66763896,+!p1@AR!0.56!4.08!AR;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.40!TBX18;;chr19:6110474..6110551,-!p1@RFX2!0.55!19.27!RFX2;;chr12:77459306..77459365,-!p1@E2F7!0.54!39.45!E2F7;;chr12:27485785..27485816,+!p1@ARNTL2!0.54!21.31!ARNTL2;;chr8:77593474..77593612,+!p1@ZFHX4!0.54!12.70!ZFHX4;;chr6:20402102..20402152,+!p1@E2F3!0.54!12.47!E2F3;;chr18:19749517..19749531,+!p3@GATA6!0.54!4.99!GATA6;;chr1:221052776..221052799,+!p1@HLX!0.54!4.99!HLX;;chr11:120107344..120107351,+!p1@POU2F3!0.54!3.17!POU2F3;;chr12:54394059..54394088,+!p3@HOXC9!0.54!2.49!HOXC9;;chr7:27142290..27142310,-!p1@HOXA2!0.54!2.49!HOXA2;;chr8:60031934..60031986,-!p6@TOX!0.54!2.49!TOX;;chr2:172950227..172950249,+!p2@DLX1!0.54!2.49!DLX1;;chr6:31126291..31126399,+!p1@TCF19!0.53!29.02!TCF19;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.53!13.60!TAL1;;chr3:12329397..12329433,+!p2@PPARG!0.53!6.35!PPARG;;chr9:99180617..99180658,-!p1@ZNF367!0.53!6.12!ZNF367;;chr2:200323414..200323455,-!p1@SATB2!0.53!5.89!SATB2;;chr11:8102846..8102892,+!p1@TUB!0.53!3.63!TUB;;chr10:8095593..8095625,+!p3@GATA3!0.53!2.95!GATA3;;chr3:114343768..114343822,-!p1@ZBTB20!0.52!12.70!ZBTB20;;chr7:27135591..27135658,-!p1@HOXA1!0.52!5.21!HOXA1;;chr6:45390077..45390105,+!p9@RUNX2!0.52!3.17!RUNX2;;chr1:164528410..164528428,+!p1@PBX1!0.51!21.54!PBX1;;chr21:27107465..27107557,+!p3@GABPA!0.51!10.20!GABPA;;chr12:53625966..53626012,-!p2@RARG!0.51!7.25!RARG;;chr5:158526917..158526932,-!p1@EBF1!0.51!6.80!EBF1;;chr11:12696002..12696022,+!p2@TEAD1!0.51!6.57!TEAD1;;chrX:66763815..66763854,+!p2@AR!0.51!3.17!AR;;chr3:157823517..157823562,-!p1@SHOX2!0.51!2.49!SHOX2;;chr2:172967323..172967336,-!p4@DLX2!0.51!2.27!DLX2;;chr3:138665969..138665993,-!p2@FOXL2!0.51!2.27!FOXL2;;chr4:103423079..103423112,+!p4@NFKB1!0.51!2.27!NFKB1;;chr1:201979743..201979762,+!p1@ELF3!0.51!2.27!ELF3;;chr11:1662926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| ||
Line 40: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-41.CNhs13067.10851-111F5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-41.CNhs13067.10851-111F5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-41.CNhs13067.10851-111F5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-41.CNhs13067.10851-111F5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-41.CNhs13067.10851-111F5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10851-111F5 | |id=FF:10851-111F5 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102424 | |is_a=EFO:0002091;;FF:0000210;;FF:0102424 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13067 | |library_id=CNhs13067 | ||
| | |library_id_phase_based=2:CNhs13067 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10851 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10851 | |||
|name=mesothelioma cell line:Mero-41 | |name=mesothelioma cell line:Mero-41 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13067,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13067,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 89: | Line 100: | ||
|top_motifs=NR3C1:1.92360010564;AIRE:1.27048358446;ADNP_IRX_SIX_ZHX:1.25150724299;POU1F1:1.2175170462;HSF1,2:1.16262435032;E2F1..5:0.94021099716;UFEwm:0.939558351937;NKX3-2:0.925221294027;ZBTB16:0.879644447359;NKX3-1:0.85957597076;TEAD1:0.857223404674;PAX8:0.811767777907;TEF:0.795581584595;EVI1:0.777160841576;ONECUT1,2:0.74928807743;FOXA2:0.697723783923;ZNF384:0.688845949687;MYB:0.682921717174;NFE2L2:0.682507100736;T:0.660692861157;TAL1_TCF{3,4,12}:0.660595387752;HAND1,2:0.658953315255;NFE2L1:0.647960540507;TLX1..3_NFIC{dimer}:0.640746896512;TFDP1:0.631854812911;PAX6:0.563736337955;HMGA1,2:0.53761801865;NKX2-2,8:0.528326971964;HMX1:0.527895289579;ALX4:0.46091904169;TBX4,5:0.455182834768;RFX1:0.4362750417;STAT5{A,B}:0.436190140734;ELK1,4_GABP{A,B1}:0.413435646088;HOX{A4,D4}:0.405268095245;HES1:0.391452803851;KLF4:0.383393538635;OCT4_SOX2{dimer}:0.380148778983;NFE2:0.379226170533;ALX1:0.369804715882;HOX{A5,B5}:0.360546142934;NR6A1:0.352737318281;ZNF143:0.348573733082;HOXA9_MEIS1:0.338756673146;bHLH_family:0.325452055593;FOXL1:0.317315865557;GLI1..3:0.281562038588;SOX17:0.266221154407;PRDM1:0.265387395616;NFATC1..3:0.245714868776;MYBL2:0.240429139944;TP53:0.214914932022;GFI1:0.207482002724;LEF1_TCF7_TCF7L1,2:0.206684972483;TOPORS:0.200380335223;NFY{A,B,C}:0.195876330409;FOXP3:0.140964244873;CDX1,2,4:0.140817412942;IKZF2:0.123652059798;EN1,2:0.11805198992;TFAP2B:0.107890712263;TFCP2:0.103667219579;BACH2:0.0994385789578;NKX6-1,2:0.0981448948028;GFI1B:0.0951491988838;FOXD3:0.0823843161024;GTF2A1,2:0.0820244577305;IKZF1:0.0789986532975;SRF:0.0757850656961;XBP1:0.0683513576957;CDC5L:0.0656006852566;XCPE1{core}:0.0626623088053;PAX4:0.0585210597075;RXRA_VDR{dimer}:0.0570010373688;RXR{A,B,G}:0.0480062521634;POU3F1..4:0.0352424891889;FOXM1:0.0285047742558;MYOD1:0.02628808648;PAX5:0.0202317093904;HNF4A_NR2F1,2:0.0166080367621;TBP:0.0109887596493;POU5F1:0.00644637116054;HLF:0.00482261753241;CUX2:-0.00589328468835;AHR_ARNT_ARNT2:-0.00854440429854;LHX3,4:-0.0127623208412;MAFB:-0.0139477770349;SNAI1..3:-0.0202309344143;MTE{core}:-0.020290445477;IRF1,2:-0.020319115544;FOX{I1,J2}:-0.0279268424896;GATA4:-0.0363391021622;FOS_FOS{B,L1}_JUN{B,D}:-0.0371236548633;HNF1A:-0.0415049541758;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0420677406337;HIC1:-0.070402098774;NRF1:-0.0788175184082;STAT1,3:-0.0818316669755;EBF1:-0.082232390983;MZF1:-0.0876895728909;MAZ:-0.0912652844342;CRX:-0.0976354100951;GTF2I:-0.126021352451;YY1:-0.126868078865;ZNF238:-0.128023359466;ZBTB6:-0.134546282284;IRF7:-0.135888786293;NR5A1,2:-0.136816163459;SOX{8,9,10}:-0.145858627517;ZIC1..3:-0.152414264275;GCM1,2:-0.166339159521;VSX1,2:-0.171767700081;PRRX1,2:-0.172970932271;SOX2:-0.192591413717;PDX1:-0.201823280541;NFKB1_REL_RELA:-0.20445073557;FOSL2:-0.218004366694;LMO2:-0.226181228548;GZF1:-0.235482173161;ZEB1:-0.244725436998;SMAD1..7,9:-0.245887233416;BREu{core}:-0.249042731079;POU6F1:-0.250883763639;ARID5B:-0.257960879171;ZNF148:-0.315509505765;NFIX:-0.319978899723;EGR1..3:-0.322448155731;PITX1..3:-0.328430929479;ESR1:-0.343198578638;HBP1_HMGB_SSRP1_UBTF:-0.352930964957;RREB1:-0.386740162847;POU2F1..3:-0.39046076841;CEBPA,B_DDIT3:-0.391741424064;SP1:-0.395570845607;STAT2,4,6:-0.398713147527;ELF1,2,4:-0.401618301303;GATA6:-0.402780961661;RFX2..5_RFXANK_RFXAP:-0.403599116582;FOXQ1:-0.405351700434;NKX2-1,4:-0.428641219574;FOXP1:-0.442259287055;NR1H4:-0.481793458739;EP300:-0.483032402818;AR:-0.486061000866;MED-1{core}:-0.496649964787;ZFP161:-0.498208738802;PAX1,9:-0.501165291627;MEF2{A,B,C,D}:-0.505288613315;NKX2-3_NKX2-5:-0.509375926605;ETS1,2:-0.522710247288;TFAP2{A,C}:-0.531714951579;DMAP1_NCOR{1,2}_SMARC:-0.532489918435;PPARG:-0.539403566903;ATF6:-0.552160844191;SPIB:-0.55311158833;PBX1:-0.554824312688;REST:-0.559269195905;ATF5_CREB3:-0.567920958922;PAX2:-0.57774313453;MYFfamily:-0.599166106588;RUNX1..3:-0.610818470678;NFIL3:-0.610882549587;RBPJ:-0.611703920361;SPI1:-0.616606868005;PATZ1:-0.616813072123;PAX3,7:-0.628096568834;DBP:-0.68579671677;HOX{A6,A7,B6,B7}:-0.694500610878;SPZ1:-0.701258457312;FOX{F1,F2,J1}:-0.709105389443;HIF1A:-0.748789409196;MTF1:-0.757116483597;BPTF:-0.761732694948;FOXO1,3,4:-0.765246068991;ATF4:-0.781380243679;TFAP4:-0.789595817828;NANOG:-0.814352534556;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.820717354454;NHLH1,2:-0.872374084186;ZNF423:-0.880934837901;FOX{D1,D2}:-0.886275393442;CREB1:-0.957167747857;ESRRA:-0.970136239172;FOXN1:-0.992470091929;SREBF1,2:-1.04734984104;TGIF1:-1.04783779905;ATF2:-1.11168401191;SOX5:-1.12765020878;TLX2:-1.15211937805;NANOG{mouse}:-1.16931888298;RORA:-1.33867689439;JUN:-1.4201909485 | |top_motifs=NR3C1:1.92360010564;AIRE:1.27048358446;ADNP_IRX_SIX_ZHX:1.25150724299;POU1F1:1.2175170462;HSF1,2:1.16262435032;E2F1..5:0.94021099716;UFEwm:0.939558351937;NKX3-2:0.925221294027;ZBTB16:0.879644447359;NKX3-1:0.85957597076;TEAD1:0.857223404674;PAX8:0.811767777907;TEF:0.795581584595;EVI1:0.777160841576;ONECUT1,2:0.74928807743;FOXA2:0.697723783923;ZNF384:0.688845949687;MYB:0.682921717174;NFE2L2:0.682507100736;T:0.660692861157;TAL1_TCF{3,4,12}:0.660595387752;HAND1,2:0.658953315255;NFE2L1:0.647960540507;TLX1..3_NFIC{dimer}:0.640746896512;TFDP1:0.631854812911;PAX6:0.563736337955;HMGA1,2:0.53761801865;NKX2-2,8:0.528326971964;HMX1:0.527895289579;ALX4:0.46091904169;TBX4,5:0.455182834768;RFX1:0.4362750417;STAT5{A,B}:0.436190140734;ELK1,4_GABP{A,B1}:0.413435646088;HOX{A4,D4}:0.405268095245;HES1:0.391452803851;KLF4:0.383393538635;OCT4_SOX2{dimer}:0.380148778983;NFE2:0.379226170533;ALX1:0.369804715882;HOX{A5,B5}:0.360546142934;NR6A1:0.352737318281;ZNF143:0.348573733082;HOXA9_MEIS1:0.338756673146;bHLH_family:0.325452055593;FOXL1:0.317315865557;GLI1..3:0.281562038588;SOX17:0.266221154407;PRDM1:0.265387395616;NFATC1..3:0.245714868776;MYBL2:0.240429139944;TP53:0.214914932022;GFI1:0.207482002724;LEF1_TCF7_TCF7L1,2:0.206684972483;TOPORS:0.200380335223;NFY{A,B,C}:0.195876330409;FOXP3:0.140964244873;CDX1,2,4:0.140817412942;IKZF2:0.123652059798;EN1,2:0.11805198992;TFAP2B:0.107890712263;TFCP2:0.103667219579;BACH2:0.0994385789578;NKX6-1,2:0.0981448948028;GFI1B:0.0951491988838;FOXD3:0.0823843161024;GTF2A1,2:0.0820244577305;IKZF1:0.0789986532975;SRF:0.0757850656961;XBP1:0.0683513576957;CDC5L:0.0656006852566;XCPE1{core}:0.0626623088053;PAX4:0.0585210597075;RXRA_VDR{dimer}:0.0570010373688;RXR{A,B,G}:0.0480062521634;POU3F1..4:0.0352424891889;FOXM1:0.0285047742558;MYOD1:0.02628808648;PAX5:0.0202317093904;HNF4A_NR2F1,2:0.0166080367621;TBP:0.0109887596493;POU5F1:0.00644637116054;HLF:0.00482261753241;CUX2:-0.00589328468835;AHR_ARNT_ARNT2:-0.00854440429854;LHX3,4:-0.0127623208412;MAFB:-0.0139477770349;SNAI1..3:-0.0202309344143;MTE{core}:-0.020290445477;IRF1,2:-0.020319115544;FOX{I1,J2}:-0.0279268424896;GATA4:-0.0363391021622;FOS_FOS{B,L1}_JUN{B,D}:-0.0371236548633;HNF1A:-0.0415049541758;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0420677406337;HIC1:-0.070402098774;NRF1:-0.0788175184082;STAT1,3:-0.0818316669755;EBF1:-0.082232390983;MZF1:-0.0876895728909;MAZ:-0.0912652844342;CRX:-0.0976354100951;GTF2I:-0.126021352451;YY1:-0.126868078865;ZNF238:-0.128023359466;ZBTB6:-0.134546282284;IRF7:-0.135888786293;NR5A1,2:-0.136816163459;SOX{8,9,10}:-0.145858627517;ZIC1..3:-0.152414264275;GCM1,2:-0.166339159521;VSX1,2:-0.171767700081;PRRX1,2:-0.172970932271;SOX2:-0.192591413717;PDX1:-0.201823280541;NFKB1_REL_RELA:-0.20445073557;FOSL2:-0.218004366694;LMO2:-0.226181228548;GZF1:-0.235482173161;ZEB1:-0.244725436998;SMAD1..7,9:-0.245887233416;BREu{core}:-0.249042731079;POU6F1:-0.250883763639;ARID5B:-0.257960879171;ZNF148:-0.315509505765;NFIX:-0.319978899723;EGR1..3:-0.322448155731;PITX1..3:-0.328430929479;ESR1:-0.343198578638;HBP1_HMGB_SSRP1_UBTF:-0.352930964957;RREB1:-0.386740162847;POU2F1..3:-0.39046076841;CEBPA,B_DDIT3:-0.391741424064;SP1:-0.395570845607;STAT2,4,6:-0.398713147527;ELF1,2,4:-0.401618301303;GATA6:-0.402780961661;RFX2..5_RFXANK_RFXAP:-0.403599116582;FOXQ1:-0.405351700434;NKX2-1,4:-0.428641219574;FOXP1:-0.442259287055;NR1H4:-0.481793458739;EP300:-0.483032402818;AR:-0.486061000866;MED-1{core}:-0.496649964787;ZFP161:-0.498208738802;PAX1,9:-0.501165291627;MEF2{A,B,C,D}:-0.505288613315;NKX2-3_NKX2-5:-0.509375926605;ETS1,2:-0.522710247288;TFAP2{A,C}:-0.531714951579;DMAP1_NCOR{1,2}_SMARC:-0.532489918435;PPARG:-0.539403566903;ATF6:-0.552160844191;SPIB:-0.55311158833;PBX1:-0.554824312688;REST:-0.559269195905;ATF5_CREB3:-0.567920958922;PAX2:-0.57774313453;MYFfamily:-0.599166106588;RUNX1..3:-0.610818470678;NFIL3:-0.610882549587;RBPJ:-0.611703920361;SPI1:-0.616606868005;PATZ1:-0.616813072123;PAX3,7:-0.628096568834;DBP:-0.68579671677;HOX{A6,A7,B6,B7}:-0.694500610878;SPZ1:-0.701258457312;FOX{F1,F2,J1}:-0.709105389443;HIF1A:-0.748789409196;MTF1:-0.757116483597;BPTF:-0.761732694948;FOXO1,3,4:-0.765246068991;ATF4:-0.781380243679;TFAP4:-0.789595817828;NANOG:-0.814352534556;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.820717354454;NHLH1,2:-0.872374084186;ZNF423:-0.880934837901;FOX{D1,D2}:-0.886275393442;CREB1:-0.957167747857;ESRRA:-0.970136239172;FOXN1:-0.992470091929;SREBF1,2:-1.04734984104;TGIF1:-1.04783779905;ATF2:-1.11168401191;SOX5:-1.12765020878;TLX2:-1.15211937805;NANOG{mouse}:-1.16931888298;RORA:-1.33867689439;JUN:-1.4201909485 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10851-111F5;search_select_hide=table117:FF:10851-111F5 | |||
}} | }} |
Latest revision as of 15:09, 3 June 2020
Name: | mesothelioma cell line:Mero-41 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13067 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13067
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13067
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.32 |
10 | 10 | 0.423 |
100 | 100 | 0.14 |
101 | 101 | 0.236 |
102 | 102 | 0.314 |
103 | 103 | 0.272 |
104 | 104 | 0.752 |
105 | 105 | 0.0248 |
106 | 106 | 0.577 |
107 | 107 | 0.0454 |
108 | 108 | 0.887 |
109 | 109 | 0.0826 |
11 | 11 | 0.793 |
110 | 110 | 0.546 |
111 | 111 | 0.994 |
112 | 112 | 0.762 |
113 | 113 | 0.00921 |
114 | 114 | 0.402 |
115 | 115 | 0.309 |
116 | 116 | 0.453 |
117 | 117 | 0.891 |
118 | 118 | 0.488 |
119 | 119 | 0.301 |
12 | 12 | 0.774 |
120 | 120 | 0.276 |
121 | 121 | 0.663 |
122 | 122 | 0.422 |
123 | 123 | 0.0839 |
124 | 124 | 0.0168 |
125 | 125 | 0.934 |
126 | 126 | 0.703 |
127 | 127 | 0.77 |
128 | 128 | 0.228 |
129 | 129 | 0.963 |
13 | 13 | 0.0989 |
130 | 130 | 0.431 |
131 | 131 | 0.916 |
132 | 132 | 0.937 |
133 | 133 | 0.0788 |
134 | 134 | 0.458 |
135 | 135 | 0.42 |
136 | 136 | 0.156 |
137 | 137 | 0.136 |
138 | 138 | 0.97 |
139 | 139 | 0.0824 |
14 | 14 | 0.319 |
140 | 140 | 0.221 |
141 | 141 | 0.758 |
142 | 142 | 0.606 |
143 | 143 | 0.226 |
144 | 144 | 0.491 |
145 | 145 | 0.571 |
146 | 146 | 0.656 |
147 | 147 | 0.242 |
148 | 148 | 0.411 |
149 | 149 | 0.841 |
15 | 15 | 0.404 |
150 | 150 | 0.0326 |
151 | 151 | 0.264 |
152 | 152 | 0.179 |
153 | 153 | 0.417 |
154 | 154 | 0.966 |
155 | 155 | 0.0127 |
156 | 156 | 0.173 |
157 | 157 | 0.18 |
158 | 158 | 0.133 |
159 | 159 | 0.781 |
16 | 16 | 0.146 |
160 | 160 | 0.312 |
161 | 161 | 0.532 |
162 | 162 | 0.934 |
163 | 163 | 0.804 |
164 | 164 | 0.00787 |
165 | 165 | 0.817 |
166 | 166 | 0.289 |
167 | 167 | 0.308 |
168 | 168 | 0.397 |
169 | 169 | 0.0169 |
17 | 17 | 0.808 |
18 | 18 | 0.144 |
19 | 19 | 0.7 |
2 | 2 | 0.711 |
20 | 20 | 0.996 |
21 | 21 | 0.0726 |
22 | 22 | 0.923 |
23 | 23 | 0.837 |
24 | 24 | 0.621 |
25 | 25 | 0.762 |
26 | 26 | 0.172 |
27 | 27 | 0.848 |
28 | 28 | 0.622 |
29 | 29 | 0.00509 |
3 | 3 | 0.281 |
30 | 30 | 0.649 |
31 | 31 | 0.634 |
32 | 32 | 0.035 |
33 | 33 | 0.305 |
34 | 34 | 0.166 |
35 | 35 | 0.335 |
36 | 36 | 0.837 |
37 | 37 | 0.92 |
38 | 38 | 0.868 |
39 | 39 | 0.963 |
4 | 4 | 0.372 |
40 | 40 | 0.255 |
41 | 41 | 0.0927 |
42 | 42 | 0.244 |
43 | 43 | 0.452 |
44 | 44 | 0.313 |
45 | 45 | 0.253 |
46 | 46 | 0.501 |
47 | 47 | 0.619 |
48 | 48 | 0.544 |
49 | 49 | 0.361 |
5 | 5 | 0.849 |
50 | 50 | 0.96 |
51 | 51 | 0.585 |
52 | 52 | 0.51 |
53 | 53 | 0.466 |
54 | 54 | 0.996 |
55 | 55 | 0.796 |
56 | 56 | 0.495 |
57 | 57 | 0.0624 |
58 | 58 | 0.238 |
59 | 59 | 0.601 |
6 | 6 | 0.918 |
60 | 60 | 0.439 |
61 | 61 | 0.929 |
62 | 62 | 0.577 |
63 | 63 | 0.641 |
64 | 64 | 0.848 |
65 | 65 | 0.911 |
66 | 66 | 0.415 |
67 | 67 | 0.78 |
68 | 68 | 0.861 |
69 | 69 | 0.971 |
7 | 7 | 0.956 |
70 | 70 | 0.268 |
71 | 71 | 0.00743 |
72 | 72 | 0.691 |
73 | 73 | 0.338 |
74 | 74 | 0.0135 |
75 | 75 | 0.742 |
76 | 76 | 0.433 |
77 | 77 | 0.212 |
78 | 78 | 0.44 |
79 | 79 | 0.0574 |
8 | 8 | 0.0572 |
80 | 80 | 0.114 |
81 | 81 | 0.0534 |
82 | 82 | 1 |
83 | 83 | 0.796 |
84 | 84 | 0.49 |
85 | 85 | 0.55 |
86 | 86 | 0.0649 |
87 | 87 | 0.192 |
88 | 88 | 0.506 |
89 | 89 | 0.354 |
9 | 9 | 0.333 |
90 | 90 | 0.436 |
91 | 91 | 0.596 |
92 | 92 | 0.561 |
93 | 93 | 0.751 |
94 | 94 | 0.472 |
95 | 95 | 0.801 |
96 | 96 | 0.647 |
97 | 97 | 0.88 |
98 | 98 | 0.099 |
99 | 99 | 0.0417 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13067
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)