FF:11292-117A5: Difference between revisions

Latest revision as of 16:31, 3 June 2020

Name:	Tracheal Epithelial Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11092
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	trachea
dev stage	50 years old adult
sex	female
age	50
cell type	tracheal epithelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1875
catalog number	CA504-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005201

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11092		CAGE		DRX008522		DRR009394

Accession ID Hg19

Library id		BAM		CTSS
CNhs11092		DRZ000819		DRZ002204

Accession ID Hg38

Library id		BAM		CTSS
CNhs11092		DRZ012169		DRZ013554

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.16
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0861
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.141
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0234
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.234
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.284
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0.0399
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0.0764
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0132
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.48
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.088
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0209
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.446
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0277
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0123
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.494
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0306
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.152
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0764
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0399
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11092

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.544
MA0003.1	MA0003.1	0.535
MA0004.1	MA0004.1	0.476
MA0006.1	MA0006.1	0.216
MA0007.1	MA0007.1	0.321
MA0009.1	MA0009.1	0.1
MA0014.1	MA0014.1	0.346
MA0017.1	MA0017.1	0.17
MA0018.2	MA0018.2	0.0401
MA0019.1	MA0019.1	0.399
MA0024.1	MA0024.1	0.934
MA0025.1	MA0025.1	0.483
MA0027.1	MA0027.1	0.319
MA0028.1	MA0028.1	0.00752
MA0029.1	MA0029.1	0.711
MA0030.1	MA0030.1	0.571
MA0031.1	MA0031.1	0.124
MA0035.2	MA0035.2	0.501
MA0038.1	MA0038.1	0.942
MA0039.2	MA0039.2	0.00144
MA0040.1	MA0040.1	0.318
MA0041.1	MA0041.1	0.617
MA0042.1	MA0042.1	0.507
MA0043.1	MA0043.1	0.971
MA0046.1	MA0046.1	0.288
MA0047.2	MA0047.2	0.171
MA0048.1	MA0048.1	0.419
MA0050.1	MA0050.1	5.52629e-11
MA0051.1	MA0051.1	5.67232e-5
MA0052.1	MA0052.1	0.224
MA0055.1	MA0055.1	1.38501e-4
MA0057.1	MA0057.1	0.0552
MA0058.1	MA0058.1	0.198
MA0059.1	MA0059.1	0.377
MA0060.1	MA0060.1	0.498
MA0061.1	MA0061.1	0.536
MA0062.2	MA0062.2	0.0278
MA0065.2	MA0065.2	0.0217
MA0066.1	MA0066.1	0.232
MA0067.1	MA0067.1	0.126
MA0068.1	MA0068.1	0.0115
MA0069.1	MA0069.1	0.782
MA0070.1	MA0070.1	0.915
MA0071.1	MA0071.1	0.246
MA0072.1	MA0072.1	0.873
MA0073.1	MA0073.1	0.737
MA0074.1	MA0074.1	0.337
MA0076.1	MA0076.1	0.143
MA0077.1	MA0077.1	0.691
MA0078.1	MA0078.1	0.812
MA0079.2	MA0079.2	0.772
MA0080.2	MA0080.2	0.0449
MA0081.1	MA0081.1	0.362
MA0083.1	MA0083.1	0.114
MA0084.1	MA0084.1	0.329
MA0087.1	MA0087.1	0.838
MA0088.1	MA0088.1	0.214
MA0090.1	MA0090.1	0.00152
MA0091.1	MA0091.1	0.166
MA0092.1	MA0092.1	0.56
MA0093.1	MA0093.1	0.361
MA0099.2	MA0099.2	3.13058e-14
MA0100.1	MA0100.1	0.222
MA0101.1	MA0101.1	0.774
MA0102.2	MA0102.2	0.704
MA0103.1	MA0103.1	1.50996e-7
MA0104.2	MA0104.2	0.654
MA0105.1	MA0105.1	0.457
MA0106.1	MA0106.1	9.16578e-12
MA0107.1	MA0107.1	0.824
MA0108.2	MA0108.2	0.96
MA0111.1	MA0111.1	0.758
MA0112.2	MA0112.2	0.0744
MA0113.1	MA0113.1	0.447
MA0114.1	MA0114.1	0.0537
MA0115.1	MA0115.1	0.58
MA0116.1	MA0116.1	0.0657
MA0117.1	MA0117.1	0.778
MA0119.1	MA0119.1	0.159
MA0122.1	MA0122.1	0.95
MA0124.1	MA0124.1	0.342
MA0125.1	MA0125.1	0.057
MA0131.1	MA0131.1	0.911
MA0135.1	MA0135.1	0.993
MA0136.1	MA0136.1	0.17
MA0137.2	MA0137.2	0.0483
MA0138.2	MA0138.2	0.928
MA0139.1	MA0139.1	0.506
MA0140.1	MA0140.1	0.667
MA0141.1	MA0141.1	0.773
MA0142.1	MA0142.1	0.198
MA0143.1	MA0143.1	0.98
MA0144.1	MA0144.1	0.877
MA0145.1	MA0145.1	0.0343
MA0146.1	MA0146.1	0.167
MA0147.1	MA0147.1	0.41
MA0148.1	MA0148.1	0.0299
MA0149.1	MA0149.1	0.0285
MA0150.1	MA0150.1	0.133
MA0152.1	MA0152.1	0.561
MA0153.1	MA0153.1	0.371
MA0154.1	MA0154.1	0.21
MA0155.1	MA0155.1	0.904
MA0156.1	MA0156.1	0.146
MA0157.1	MA0157.1	0.098
MA0159.1	MA0159.1	0.269
MA0160.1	MA0160.1	0.912
MA0162.1	MA0162.1	0.11
MA0163.1	MA0163.1	0.254
MA0164.1	MA0164.1	0.831
MA0258.1	MA0258.1	0.799
MA0259.1	MA0259.1	0.734

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11092

Novel motif	Logo	P-value
1	1	0.3
10	10	0.788
100	100	0.343
101	101	0.0168
102	102	0.255
103	103	0.204
104	104	0.265
105	105	0.0248
106	106	0.0896
107	107	0.032
108	108	0.666
109	109	0.0015
11	11	0.108
110	110	0.0577
111	111	0.144
112	112	0.711
113	113	0.393
114	114	0.251
115	115	0.798
116	116	0.863
117	117	0.191
118	118	0.889
119	119	0.148
12	12	0.451
120	120	0.0287
121	121	0.889
122	122	0.0261
123	123	0.893
124	124	0.477
125	125	0.414
126	126	0.656
127	127	0.147
128	128	0.692
129	129	0.192
13	13	0.0127
130	130	0.751
131	131	0.555
132	132	0.414
133	133	7.85303e-4
134	134	0.343
135	135	0.989
136	136	0.164
137	137	0.189
138	138	0.887
139	139	0.965
14	14	0.88
140	140	0.456
141	141	0.426
142	142	0.262
143	143	0.853
144	144	0.074
145	145	0.116
146	146	0.00515
147	147	0.0781
148	148	0.366
149	149	0.886
15	15	0.895
150	150	0.263
151	151	0.435
152	152	0.0459
153	153	0.32
154	154	0.793
155	155	0.872
156	156	0.364
157	157	0.515
158	158	0.167
159	159	0.402
16	16	0.0798
160	160	0.169
161	161	0.655
162	162	0.216
163	163	0.909
164	164	0.364
165	165	0.497
166	166	0.304
167	167	0.452
168	168	0.549
169	169	0.0563
17	17	0.136
18	18	0.218
19	19	0.863
2	2	0.368
20	20	0.479
21	21	0.792
22	22	0.383
23	23	0.438
24	24	0.0318
25	25	0.719
26	26	0.228
27	27	0.643
28	28	0.586
29	29	0.269
3	3	0.415
30	30	0.133
31	31	0.934
32	32	0.145
33	33	0.0561
34	34	0.9
35	35	0.379
36	36	0.306
37	37	0.32
38	38	0.272
39	39	0.298
4	4	0.423
40	40	0.00949
41	41	0.455
42	42	0.395
43	43	0.526
44	44	0.761
45	45	0.225
46	46	0.59
47	47	0.155
48	48	0.032
49	49	0.856
5	5	0.724
50	50	0.366
51	51	0.96
52	52	0.581
53	53	0.524
54	54	0.791
55	55	0.792
56	56	0.337
57	57	0.226
58	58	0.762
59	59	0.246
6	6	0.35
60	60	0.281
61	61	0.529
62	62	0.962
63	63	0.107
64	64	0.242
65	65	0.476
66	66	0.168
67	67	0.778
68	68	0.454
69	69	0.696
7	7	0.182
70	70	0.0257
71	71	0.107
72	72	0.88
73	73	0.0295
74	74	0.0179
75	75	0.0821
76	76	0.817
77	77	0.0294
78	78	0.00998
79	79	0.125
8	8	0.238
80	80	0.94
81	81	0.497
82	82	0.978
83	83	0.406
84	84	0.741
85	85	0.958
86	86	0.871
87	87	0.0333
88	88	0.5
89	89	0.117
9	9	0.995
90	90	0.958
91	91	0.677
92	92	0.955
93	93	0.959
94	94	0.729
95	95	0.0607
96	96	0.82
97	97	0.811
98	98	0.762
99	99	0.0404

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11092

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000189 human tracheal epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000307 (tracheal epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000189 (human tracheal epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
CL:0000377 (tracheoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008414
+|DRA_sample_Accession=CAGE@SAMD00005201
-|accession_numbers=CAGE;DRX008522;DRR009394;DRZ000819;DRZ002204
+|accession_numbers=CAGE;DRX008522;DRR009394;DRZ000819;DRZ002204;DRZ012169;DRZ013554
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.23!170.60!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.15!140.10!TP63;;chr1:209979467..209979494,-!p1@IRF6!2.04!121.72!IRF6;;chr11:34642612..34642646,+!p1@EHF!2.03!106.61!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.82!64.47!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.80!62.16!ZBED2;;chr6:34524093..34524135,-!p1@SPDEF!1.67!45.51!SPDEF;;chr6:10415276..10415341,-!p2@TFAP2A!1.66!53.60!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.62!46.38!BNC1;;chr1:6479968..6479986,-!p1@HES2!1.56!34.93!HES2;;chr12:54785074..54785122,-!p2@ZNF385A!1.54!51.58!ZNF385A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.63!TFAP2A;;chr6:34524049..34524089,-!p2@SPDEF!1.49!29.64!SPDEF;;chr5:134369905..134369972,-!p1@PITX1!1.47!43.49!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.46!57.35!SOX15;;chr8:10588010..10588030,-!p1@SOX7!1.44!26.46!SOX7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!26.17!ZBED1;;chr6:34524025..34524045,-!p3@SPDEF!1.43!25.88!SPDEF;;chr12:54785054..54785072,-!p4@ZNF385A!1.42!28.48!ZNF385A;;chr12:66218255..66218304,+!p3@HMGA2!1.38!60.43!HMGA2;;chr13:73633131..73633149,+!p1@KLF5!1.31!202.64!KLF5;;chr22:19748231..19748317,+!p1@TBX1!1.28!18.19!TBX1;;chr5:134369879..134369898,-!p2@PITX1!1.28!17.90!PITX1;;chr17:80797886..80797906,-!p1@ZNF750!1.24!16.36!ZNF750;;chr3:111314230..111314241,-!p2@ZBED2!1.21!15.30!ZBED2;;chr2:46524897..46524911,+!p2@EPAS1!1.20!41.09!EPAS1;;chr12:66218598..66218645,+!p2@HMGA2!1.17!62.93!HMGA2;;chr20:22565185..22565223,-!p3@FOXA2!1.17!13.95!FOXA2;;chr14:37131058..37131139,+!p1@PAX9!1.17!13.66!PAX9;;chr8:102504651..102504683,+!p1@GRHL2!1.15!13.28!GRHL2;;chr12:27485762..27485776,+!p3@ARNTL2!1.12!32.81!ARNTL2;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.22!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.10!103.34!PPP1R13L;;chr1:24645832..24645853,+!p1@GRHL3!1.04!10.01!GRHL3;;chr11:34642656..34642667,+!p2@EHF!1.02!9.53!EHF;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.24!TFAP2A;;chr6:10412576..10412599,-!p5@TFAP2A!1.00!9.04!TFAP2A;;chr17:8027418..8027432,-!p1@HES7!0.97!8.28!HES7;;chr14:38064429..38064486,-!p1@FOXA1!0.95!7.89!FOXA1;;chr11:34645791..34645836,+!p3@EHF!0.94!7.70!EHF;;chr17:46132044..46132080,+!p4@NFE2L1!0.94!7.70!NFE2L1;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.19!FOSL1;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.94!SNAI2;;chr12:66218212..66218244,+!p5@HMGA2!0.89!10.10!HMGA2;;chr20:22564895..22564910,-!p1@FOXA2!0.89!6.83!FOXA2;;chr11:65667846..65667868,-!p1@FOSL1!0.88!182.34!FOSL1;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.54!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!0.87!63.41!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!0.85!10.87!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!0.84!20.11!TWIST2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.84!5.97!TFCP2L1;;chr2:63277948..63277974,+!p1@OTX1!0.84!5.97!OTX1;;chr15:83953373..83953386,-!p2@BNC1!0.83!5.77!BNC1;;chr19:42636586..42636607,-!p1@POU2F2!0.81!15.88!POU2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.81!11.07!HMGA2;;chr1:209979449..209979460,-!p3@IRF6!0.81!5.48!IRF6;;chr20:22565370..22565388,-!p2@FOXA2!0.79!5.20!FOXA2;;chr1:24645921..24645973,+!p2@GRHL3!0.79!5.10!GRHL3;;chr8:128748308..128748324,+!p2@MYC!0.78!151.93!MYC;;chr1:158979792..158979814,+!p2@IFI16!0.78!52.83!IFI16;;chr6:34204672..34204692,+!p1@HMGA1!0.77!606.58!HMGA1;;chr12:66218003..66218018,+!p9@HMGA2!0.77!6.06!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!0.76!8.18!FOXQ1;;chr12:66218378..66218401,+!p6@HMGA2!0.76!7.79!HMGA2;;chr3:189507460..189507471,+!p3@TP63!0.76!4.81!TP63;;chr6:106546808..106546833,+!p3@PRDM1!0.75!5.97!PRDM1;;chr8:49833978..49833996,-!p1@SNAI2!0.74!104.02!SNAI2;;chr12:27485785..27485816,+!p1@ARNTL2!0.74!34.93!ARNTL2;;chr4:57547454..57547469,-!p1@HOPX!0.74!4.52!HOPX;;chr14:90085820..90085840,-!p6@FOXN3!0.74!4.52!FOXN3;;chr2:208030647..208030689,-!p1@KLF7!0.73!40.80!KLF7;;chr2:113994526..113994556,-!p3@PAX8!0.72!4.23!PAX8;;chr20:18038521..18038571,-!p1@OVOL2!0.72!4.23!OVOL2;;chr15:101069113..101069169,-!p1@CERS3!0.72!4.23!CERS3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.71!58.21!ZC3H12A;;chr2:70142232..70142251,+!p1@MXD1!0.71!26.08!MXD1;;chr17:41623009..41623053,-!p4@ETV4!0.71!7.02!ETV4;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.39!TFAP2C;;chr2:45236540..45236577,-!p1@SIX2!0.71!4.14!SIX2;;chr17:41623692..41623715,-!p1@ETV4!0.70!19.24!ETV4;;chr12:27485823..27485868,+!p2@ARNTL2!0.70!17.99!ARNTL2;;chr11:129245526..129245553,+!p1@BARX2!0.70!4.04!BARX2;;chr11:128392273..128392308,-!p2@ETS1!0.69!18.57!ETS1;;chr9:100615499..100615519,+!p1@FOXE1!0.69!3.95!FOXE1;;chr6:21597765..21597779,+!p2@SOX4!0.67!34.35!SOX4;;chr2:46612334..46612349,+!p6@EPAS1!0.67!5.10!EPAS1;;chr4:57522598..57522664,-!p3@HOPX!0.67!3.66!HOPX;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.68!ZBTB38;;chr14:21566731..21566836,-!p1@ZNF219!0.64!42.53!ZNF219;;chr2:46524878..46524891,+!p3@EPAS1!0.64!6.35!EPAS1;;chr14:37051798..37051831,-!p1@NKX2-8!0.64!3.37!NKX2-8;;chr17:46131916..46131952,+!p7@NFE2L1!0.64!3.37!NFE2L1;;chr12:77459306..77459365,-!p1@E2F7!0.63!48.88!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000307;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
 |ffid_belonging_in_development=CL:0000223,CL:0000377
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11092.11292-117A5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11092.11292-117A5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11092.11292-117A5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11092.11292-117A5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11092.11292-117A5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11292-117A5
 |is_a=EFO:0002091;;FF:0000189
 |is_obsolete=
 |library_id=CNhs11092
-|library_ids=CNhs11092
+|library_id_phase_based=2:CNhs11092
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11292
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11292
 |name=Tracheal Epithelial Cells, donor1
 |namespace=FANTOM5
@@ Line 50: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11092,LSID724,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10009,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11292-117A5;search_select_hide=table117:FF:11292-117A5
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FF:11292-117A5: Difference between revisions

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Latest revision as of 16:31, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0