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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007758
|DRA_sample_Accession=CAGE@SAMD00005237
|accession_numbers=CAGE;DRX007863;DRR008735;DRZ000160;DRZ001545
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005237
|accession_numbers=CAGE;DRX007863;DRR008735;DRZ000160;DRZ001545;DRZ011510;DRZ012895
|accession_numbers_RNASeq=RNA-Seq;DRX057120;DRR062879;DRZ007955
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001052,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001052,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251,CL:0002253
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251,CL:0002253
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr13:28543431..28543487,-!p1@CDX2!2.92!831.37!CDX2;;chr13:28543285..28543314,-!p2@CDX2!2.73!537.29!CDX2;;chr13:28541477..28541493,-!p6@CDX2!2.32!207.30!CDX2;;chr13:72441315..72441454,-!p1@DACH1!2.27!357.69!DACH1;;chr13:28541455..28541475,-!p7@CDX2!2.07!115.34!CDX2;;chr13:28543316..28543329,-!p4@CDX2!2.05!111.66!CDX2;;chr8:128747757..128747800,+!p7@MYC!1.94!115.55!MYC;;chr13:28543388..28543406,-!p3@CDX2!1.92!82.01!CDX2;;chr10:119302232..119302265,+!p1@EMX2!1.72!51.93!EMX2;;chr13:28543253..28543276,-!p5@CDX2!1.71!50.42!CDX2;;chr12:24102576..24102623,-!p2@SOX5!1.69!48.25!SOX5;;chr13:72441074..72441172,-!p2@DACH1!1.64!43.06!DACH1;;chr12:54785074..54785122,-!p2@ZNF385A!1.60!59.29!ZNF385A;;chr4:109090075..109090095,-!p2@LEF1!1.52!32.03!LEF1;;chr12:54348655..54348693,+!p1@HOXC12!1.50!30.29!HOXC12;;chr13:28543409..28543420,-!p8@CDX2!1.44!26.40!CDX2;;chr10:119302268..119302282,+!p4@EMX2!1.40!24.24!EMX2;;chr17:48072574..48072597,-!p1@DLX3!1.39!23.80!DLX3;;chr17:46682321..46682362,-!p1@HOXB6!1.36!22.07!HOXB6;;chr2:172967621..172967637,-!p1@DLX2!1.35!56.48!DLX2;;chr2:16080659..16080685,+!p1@MYCN!1.35!21.64!MYCN;;chr2:177001290..177001315,+!p1@HOXD3!1.35!21.21!HOXD3;;chr8:128748308..128748324,+!p2@MYC!1.32!537.94!MYC;;chr2:145275947..145275981,-!p10@ZEB2!1.32!19.91!ZEB2;;chr5:134369905..134369972,-!p1@PITX1!1.31!29.86!PITX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!19.04!HOXC5;;chr18:53257001..53257015,-!p5@TCF4!1.27!29.86!TCF4;;chr8:128747729..128747748,+!p14@MYC!1.27!17.74!MYC;;chr15:57511609..57511651,+!p2@TCF12!1.24!27.48!TCF12;;chr21:40033695..40033712,-!p6@ERG!1.24!16.23!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.23!18.83!MECOM;;chr12:54785054..54785072,-!p4@ZNF385A!1.22!17.74!ZNF385A;;chr8:128750654..128750793,+!p3@MYC!1.18!56.48!MYC;;chr18:53257027..53257052,-!p3@TCF4!1.17!55.18!TCF4;;chr3:185823495..185823511,-!p12@ETV5!1.17!13.63!ETV5;;chr3:25470062..25470084,+!p4@RARB!1.16!13.42!RARB;;chr4:109089901..109089930,-!p3@LEF1!1.15!12.98!LEF1;;chr8:128748470..128748487,+!p1@MYC!1.14!1379.91!MYC;;chr2:180726058..180726098,-!p3@ZNF385B!1.14!12.77!ZNF385B;;chr4:111558135..111558198,-!p2@PITX2!1.14!12.77!PITX2;;chr1:170633348..170633399,+!p2@PRRX1!1.13!17.09!PRRX1;;chr3:63953435..63953499,+!p1@ATXN7!1.13!12.55!ATXN7;;chrX:85403445..85403479,+!p2@DACH2!1.12!12.33!DACH2;;chr10:70320074..70320106,+!p1@TET1!1.11!24.02!TET1;;chr8:128750175..128750201,+!p8@MYC!1.11!20.77!MYC;;chr13:28494130..28494168,+!p1@PDX1!1.11!11.90!PDX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.68!PKNOX2;;chr15:57511589..57511608,+!p4@TCF12!1.10!11.68!TCF12;;chr11:16133391..16133439,-!p6@SOX6!1.10!11.47!SOX6;;chr8:128749984..128750033,+!p4@MYC!1.09!40.68!MYC;;chr8:128750143..128750160,+!p19@MYC!1.09!12.55!MYC;;chr17:42295777..42295816,-!p7@UBTF!1.08!13.42!UBTF;;chr8:128747661..128747703,+!p6@MYC!1.07!14.71!MYC;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.07!10.82!ZBED1;;chr16:54964740..54964789,+!p1@IRX5!1.06!15.36!IRX5;;chr14:29234581..29234601,+!p2@FOXG1!1.06!10.60!FOXG1;;chr2:180726040..180726052,-!p2@ZNF385B!1.06!10.39!ZNF385B;;chr4:109089996..109090012,-!p5@LEF1!1.05!10.17!LEF1;;chr11:8102749..8102769,+!p2@TUB!1.03!18.83!TUB;;chr18:52989565..52989623,-!p9@TCF4!1.03!12.33!TCF4;;chr18:53252911..53252918,-!p106@TCF4!1.03!9.74!TCF4;;chr14:21994337..21994442,-!p1@SALL2!1.00!25.10!SALL2;;chr2:71127699..71127744,+!p1@VAX2!1.00!19.04!VAX2;;chr12:54393880..54393962,+!p1@HOXC9!1.00!9.09!HOXC9;;chr17:46806067..46806097,-!p1@HOXB13!1.00!9.09!HOXB13;;chr12:54332608..54332636,+!p1@HOXC13!0.99!8.87!HOXC13;;chrX:84499081..84499115,+!p2@ZNF711!0.98!12.77!ZNF711;;chr8:128752771..128752843,+!p9@MYC!0.98!12.55!MYC;;chr7:97840743..97840786,+!p1@BHLHA15!0.98!8.66!BHLHA15;;chr3:25469724..25469773,+!p1@RARB!0.97!12.12!RARB;;chr9:127533519..127533573,-!p2@NR6A1!0.97!10.17!NR6A1;;chr4:109090106..109090124,-!p10@LEF1!0.97!8.44!LEF1;;chr8:106330656..106330684,+!p1@ZFPM2!0.96!21.64!ZFPM2;;chr6:144329531..144329546,-!p5@PLAGL1!0.96!12.98!PLAGL1;;chr12:54366894..54366922,+!p2@HOXC11!0.96!8.22!HOXC11;;chr2:176969228..176969260,+!p1@HOXD11!0.96!8.22!HOXD11;;chr2:177001268..177001287,+!p3@HOXD3!0.96!8.22!HOXD3;;chr3:141747459..141747475,-!p1@TFDP2!0.95!68.16!TFDP2;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.29!OSR1;;chr1:170632137..170632172,+!p10@PRRX1!0.95!8.01!PRRX1;;chr18:53256971..53256984,-!p26@TCF4!0.95!8.01!TCF4;;chr8:128750983..128751021,+!p11@MYC!0.94!11.04!MYC;;chr14:37131058..37131139,+!p1@PAX9!0.94!7.79!PAX9;;chr8:37553292..37553317,+!p1@ZNF703!0.93!183.06!ZNF703;;chr14:21994449..21994524,-!p2@SALL2!0.93!22.94!SALL2;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.66!PRRX1;;chr21:40032581..40032605,-!p4@ERG!0.93!7.57!ERG;;chr12:115121962..115121987,-!p1@TBX3!0.92!64.27!TBX3;;chr12:53614115..53614154,-!p1@RARG!0.92!41.11!RARG;;chr17:46806098..46806118,-!p3@HOXB13!0.92!7.36!HOXB13;;chr2:60780607..60780624,-!p2@BCL11A!0.91!22.94!BCL11A;;chr18:52989031..52989079,-!p2@TCF4!0.91!17.53!TCF4;;chr12:54366949..54366973,+!p3@HOXC1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|expression_enrichment_score=chr13:28543431..28543487,-!p1@CDX2!2.92!831.37!CDX2;;chr13:28543285..28543314,-!p2@CDX2!2.73!537.29!CDX2;;chr13:28541477..28541493,-!p6@CDX2!2.32!207.30!CDX2;;chr13:72441315..72441454,-!p1@DACH1!2.27!357.69!DACH1;;chr13:28541455..28541475,-!p7@CDX2!2.07!115.34!CDX2;;chr13:28543316..28543329,-!p4@CDX2!2.05!111.66!CDX2;;chr8:128747757..128747800,+!p7@MYC!1.94!115.55!MYC;;chr13:28543388..28543406,-!p3@CDX2!1.92!82.01!CDX2;;chr10:119302232..119302265,+!p1@EMX2!1.72!51.93!EMX2;;chr13:28543253..28543276,-!p5@CDX2!1.71!50.42!CDX2;;chr12:24102576..24102623,-!p2@SOX5!1.69!48.25!SOX5;;chr13:72441074..72441172,-!p2@DACH1!1.64!43.06!DACH1;;chr12:54785074..54785122,-!p2@ZNF385A!1.60!59.29!ZNF385A;;chr4:109090075..109090095,-!p2@LEF1!1.52!32.03!LEF1;;chr12:54348655..54348693,+!p1@HOXC12!1.50!30.29!HOXC12;;chr13:28543409..28543420,-!p8@CDX2!1.44!26.40!CDX2;;chr10:119302268..119302282,+!p4@EMX2!1.40!24.24!EMX2;;chr17:48072574..48072597,-!p1@DLX3!1.39!23.80!DLX3;;chr17:46682321..46682362,-!p1@HOXB6!1.36!22.07!HOXB6;;chr2:172967621..172967637,-!p1@DLX2!1.35!56.48!DLX2;;chr2:16080659..16080685,+!p1@MYCN!1.35!21.64!MYCN;;chr2:177001290..177001315,+!p1@HOXD3!1.35!21.21!HOXD3;;chr8:128748308..128748324,+!p2@MYC!1.32!537.94!MYC;;chr2:145275947..145275981,-!p10@ZEB2!1.32!19.91!ZEB2;;chr5:134369905..134369972,-!p1@PITX1!1.31!29.86!PITX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!19.04!HOXC5;;chr18:53257001..53257015,-!p5@TCF4!1.27!29.86!TCF4;;chr8:128747729..128747748,+!p14@MYC!1.27!17.74!MYC;;chr15:57511609..57511651,+!p2@TCF12!1.24!27.48!TCF12;;chr21:40033695..40033712,-!p6@ERG!1.24!16.23!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.23!18.83!MECOM;;chr12:54785054..54785072,-!p4@ZNF385A!1.22!17.74!ZNF385A;;chr8:128750654..128750793,+!p3@MYC!1.18!56.48!MYC;;chr18:53257027..53257052,-!p3@TCF4!1.17!55.18!TCF4;;chr3:185823495..185823511,-!p12@ETV5!1.17!13.63!ETV5;;chr3:25470062..25470084,+!p4@RARB!1.16!13.42!RARB;;chr4:109089901..109089930,-!p3@LEF1!1.15!12.98!LEF1;;chr8:128748470..128748487,+!p1@MYC!1.14!1379.91!MYC;;chr2:180726058..180726098,-!p3@ZNF385B!1.14!12.77!ZNF385B;;chr4:111558135..111558198,-!p2@PITX2!1.14!12.77!PITX2;;chr1:170633348..170633399,+!p2@PRRX1!1.13!17.09!PRRX1;;chr3:63953435..63953499,+!p1@ATXN7!1.13!12.55!ATXN7;;chrX:85403445..85403479,+!p2@DACH2!1.12!12.33!DACH2;;chr10:70320074..70320106,+!p1@TET1!1.11!24.02!TET1;;chr8:128750175..128750201,+!p8@MYC!1.11!20.77!MYC;;chr13:28494130..28494168,+!p1@PDX1!1.11!11.90!PDX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.68!PKNOX2;;chr15:57511589..57511608,+!p4@TCF12!1.10!11.68!TCF12;;chr11:16133391..16133439,-!p6@SOX6!1.10!11.47!SOX6;;chr8:128749984..128750033,+!p4@MYC!1.09!40.68!MYC;;chr8:128750143..128750160,+!p19@MYC!1.09!12.55!MYC;;chr17:42295777..42295816,-!p7@UBTF!1.08!13.42!UBTF;;chr8:128747661..128747703,+!p6@MYC!1.07!14.71!MYC;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.07!10.82!ZBED1;;chr16:54964740..54964789,+!p1@IRX5!1.06!15.36!IRX5;;chr14:29234581..29234601,+!p2@FOXG1!1.06!10.60!FOXG1;;chr2:180726040..180726052,-!p2@ZNF385B!1.06!10.39!ZNF385B;;chr4:109089996..109090012,-!p5@LEF1!1.05!10.17!LEF1;;chr11:8102749..8102769,+!p2@TUB!1.03!18.83!TUB;;chr18:52989565..52989623,-!p9@TCF4!1.03!12.33!TCF4;;chr18:53252911..53252918,-!p106@TCF4!1.03!9.74!TCF4;;chr14:21994337..21994442,-!p1@SALL2!1.00!25.10!SALL2;;chr2:71127699..71127744,+!p1@VAX2!1.00!19.04!VAX2;;chr12:54393880..54393962,+!p1@HOXC9!1.00!9.09!HOXC9;;chr17:46806067..46806097,-!p1@HOXB13!1.00!9.09!HOXB13;;chr12:54332608..54332636,+!p1@HOXC13!0.99!8.87!HOXC13;;chrX:84499081..84499115,+!p2@ZNF711!0.98!12.77!ZNF711;;chr8:128752771..128752843,+!p9@MYC!0.98!12.55!MYC;;chr7:97840743..97840786,+!p1@BHLHA15!0.98!8.66!BHLHA15;;chr3:25469724..25469773,+!p1@RARB!0.97!12.12!RARB;;chr9:127533519..127533573,-!p2@NR6A1!0.97!10.17!NR6A1;;chr4:109090106..109090124,-!p10@LEF1!0.97!8.44!LEF1;;chr8:106330656..106330684,+!p1@ZFPM2!0.96!21.64!ZFPM2;;chr6:144329531..144329546,-!p5@PLAGL1!0.96!12.98!PLAGL1;;chr12:54366894..54366922,+!p2@HOXC11!0.96!8.22!HOXC11;;chr2:176969228..176969260,+!p1@HOXD11!0.96!8.22!HOXD11;;chr2:177001268..177001287,+!p3@HOXD3!0.96!8.22!HOXD3;;chr3:141747459..141747475,-!p1@TFDP2!0.95!68.16!TFDP2;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.29!OSR1;;chr1:170632137..170632172,+!p10@PRRX1!0.95!8.01!PRRX1;;chr18:53256971..53256984,-!p26@TCF4!0.95!8.01!TCF4;;chr8:128750983..128751021,+!p11@MYC!0.94!11.04!MYC;;chr14:37131058..37131139,+!p1@PAX9!0.94!7.79!PAX9;;chr8:37553292..37553317,+!p1@ZNF703!0.93!183.06!ZNF703;;chr14:21994449..21994524,-!p2@SALL2!0.93!22.94!SALL2;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.66!PRRX1;;chr21:40032581..40032605,-!p4@ERG!0.93!7.57!ERG;;chr12:115121962..115121987,-!p1@TBX3!0.92!64.27!TBX3;;chr12:53614115..53614154,-!p1@RARG!0.92!41.11!RARG;;chr17:46806098..46806118,-!p3@HOXB13!0.92!7.36!HOXB13;;chr2:60780607..60780624,-!p2@BCL11A!0.91!22.94!BCL11A;;chr18:52989031..52989079,-!p2@TCF4!0.91!17.53!TCF4;;chr12:54366949..54366973,+!p3@HOXC1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Line 40: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCOLO-320.CNhs10737.10420-106C6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCOLO-320.CNhs10737.10420-106C6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCOLO-320.CNhs10737.10420-106C6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCOLO-320.CNhs10737.10420-106C6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCOLO-320.CNhs10737.10420-106C6.hg38.nobarcode.ctss.bed.gz
|id=FF:10420-106C6
|id=FF:10420-106C6
|is_a=EFO:0002091;;FF:0000210;;FF:0102047
|is_a=EFO:0002091;;FF:0000210;;FF:0102047
|is_obsolete=
|is_obsolete=
|library_id=CNhs10737
|library_id=CNhs10737
|library_id_phase_based=2:CNhs10737
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10420
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10420
|name=colon carcinoma cell line:COLO-320
|name=colon carcinoma cell line:COLO-320
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 62:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10737,LSID691,release008,COMPLETED
|profile_hcage=CNhs10737,LSID691,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=cell lines
Line 88: Line 103:
|top_motifs=LEF1_TCF7_TCF7L1,2:3.53826628993;VSX1,2:2.66164219037;FOXQ1:2.53607197434;NFY{A,B,C}:2.23532385345;TEF:2.10010085453;PBX1:1.99794037035;NKX2-3_NKX2-5:1.97689240561;NRF1:1.9420634319;BREu{core}:1.87630325615;PDX1:1.74319585479;NKX6-1,2:1.72881655855;ZNF143:1.70725791503;PAX8:1.69594560509;E2F1..5:1.64751053712;ADNP_IRX_SIX_ZHX:1.55449713845;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.51508691988;AHR_ARNT_ARNT2:1.49302726441;bHLH_family:1.40575007524;YY1:1.34468392179;FOXN1:1.32844327621;CRX:1.29692979861;RBPJ:1.2937253827;NKX2-1,4:1.262133676;POU3F1..4:1.25327387293;ARID5B:1.22223715458;PAX3,7:1.21939881864;EN1,2:1.20588744286;ELK1,4_GABP{A,B1}:1.12381326484;ZFP161:1.12374398686;FOXA2:1.10342164362;HBP1_HMGB_SSRP1_UBTF:1.03287086218;PITX1..3:0.958099684538;FOX{I1,J2}:0.94154155863;HOXA9_MEIS1:0.927127980825;GFI1:0.913122585783;ALX1:0.910476331777;CDX1,2,4:0.827018912501;MYB:0.814804398648;HOX{A6,A7,B6,B7}:0.806389516773;TOPORS:0.761184244165;NR6A1:0.745190208031;TFDP1:0.729826235533;EVI1:0.704061571189;HOX{A5,B5}:0.699806717267;XBP1:0.600581559933;SOX17:0.586432831681;STAT1,3:0.573935113795;POU1F1:0.571014704521;FOXM1:0.562337495169;NANOG:0.534423381934;STAT5{A,B}:0.526984380336;CREB1:0.515206457935;PAX4:0.500790386917;GATA6:0.460045607102;CUX2:0.457609874809;NANOG{mouse}:0.43615358864;MEF2{A,B,C,D}:0.431736028761;AIRE:0.421698336856;RFX2..5_RFXANK_RFXAP:0.402040252364;TGIF1:0.391288144825;SOX{8,9,10}:0.385164427868;PRDM1:0.376682361546;KLF4:0.375237885964;SNAI1..3:0.374842837385;PPARG:0.372662911419;ZEB1:0.366278300865;BPTF:0.359147796139;POU2F1..3:0.344753428713;GATA4:0.331010201537;CDC5L:0.316754342669;OCT4_SOX2{dimer}:0.314644249414;HES1:0.307746522496;AR:0.302451540413;FOX{D1,D2}:0.28136764393;NR5A1,2:0.26687907373;FOXP1:0.256845507707;POU5F1:0.255352780199;RFX1:0.239213716663;HIF1A:0.218422545226;PRRX1,2:0.191579907619;ZBTB16:0.187883611054;LHX3,4:0.187577518461;IKZF1:0.185819216769;ESRRA:0.14645565542;ZIC1..3:0.125454904035;MYOD1:0.108392789099;T:0.0904552276818;GTF2I:0.0889239456495;LMO2:0.0699428406322;ONECUT1,2:0.068376591127;HAND1,2:0.054147192319;RORA:0.0465360210853;ATF5_CREB3:0.0458073933148;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.045360691967;SOX2:0.0395360581626;ATF4:0.0379604828059;DBP:-0.00303755273579;MYBL2:-0.0228598714444;MZF1:-0.046995713051;IKZF2:-0.0488261430524;HNF1A:-0.0589880621325;RREB1:-0.0745585080068;PAX2:-0.0832789969085;SP1:-0.0885244483575;SREBF1,2:-0.101416045098;GFI1B:-0.104996837824;HNF4A_NR2F1,2:-0.107447011131;MED-1{core}:-0.1252733284;ELF1,2,4:-0.132779161356;NHLH1,2:-0.167063220066;PAX6:-0.167740618189;HOX{A4,D4}:-0.172367457283;POU6F1:-0.17926069617;FOXP3:-0.185986263764;HMGA1,2:-0.188443216436;GTF2A1,2:-0.199165540711;TFAP2{A,C}:-0.222542988601;HIC1:-0.228476767197;PAX1,9:-0.235026639226;MYFfamily:-0.248531644474;FOX{F1,F2,J1}:-0.256036333258;PAX5:-0.26205738234;ZBTB6:-0.272487591217;NFIL3:-0.273692055173;FOSL2:-0.28454948874;ATF6:-0.290358481329;HLF:-0.294005915821;ATF2:-0.345767432355;NFKB1_REL_RELA:-0.388864102978;TLX2:-0.392862552777;PATZ1:-0.394322392166;TAL1_TCF{3,4,12}:-0.402438970131;SOX5:-0.413271409937;IRF7:-0.428344098919;NKX3-2:-0.429264394255;NFIX:-0.434123333347;DMAP1_NCOR{1,2}_SMARC:-0.445863932635;RUNX1..3:-0.453894259164;TFAP2B:-0.496598492936;EGR1..3:-0.505985881542;FOS_FOS{B,L1}_JUN{B,D}:-0.509879953172;TFAP4:-0.511286027919;CEBPA,B_DDIT3:-0.521092737271;FOXD3:-0.577759125777;SPIB:-0.590301819918;UFEwm:-0.606153948448;NFE2L2:-0.618826125846;NFE2:-0.648360225642;NKX3-1:-0.651458935667;TEAD1:-0.6582657243;SPI1:-0.677010496589;BACH2:-0.67876172525;MTE{core}:-0.686190252323;REST:-0.697045677559;EBF1:-0.702839472783;FOXO1,3,4:-0.733758792535;ZNF384:-0.750141047978;JUN:-0.794941540529;TLX1..3_NFIC{dimer}:-0.839500441447;GCM1,2:-0.84570382142;NR3C1:-0.876156120504;NKX2-2,8:-0.892557325888;SMAD1..7,9:-0.937885039573;NFATC1..3:-0.966986640434;TBP:-0.978430767268;XCPE1{core}:-0.99620127631;MAFB:-0.99785527233;IRF1,2:-1.00734321065;FOXL1:-1.0127587303;ETS1,2:-1.01903136134;ZNF238:-1.05885099662;MTF1:-1.06546871332;ALX4:-1.06795764866;GZF1:-1.07284555336;MAZ:-1.08865474516;RXR{A,B,G}:-1.09698949431;HSF1,2:-1.11850391887;TP53:-1.15754937655;ZNF148:-1.18982100179;NR1H4:-1.34380987574;ESR1:-1.34756386002;TBX4,5:-1.46169677784;GLI1..3:-1.51703278451;NFE2L1:-1.5783418277;SRF:-1.58839028171;RXRA_VDR{dimer}:-1.60277761184;STAT2,4,6:-1.62781881598;SPZ1:-1.79771536599;HMX1:-1.9341548219;EP300:-2.12562833946;TFCP2:-2.13000104565;ZNF423:-2.14639859329
|top_motifs=LEF1_TCF7_TCF7L1,2:3.53826628993;VSX1,2:2.66164219037;FOXQ1:2.53607197434;NFY{A,B,C}:2.23532385345;TEF:2.10010085453;PBX1:1.99794037035;NKX2-3_NKX2-5:1.97689240561;NRF1:1.9420634319;BREu{core}:1.87630325615;PDX1:1.74319585479;NKX6-1,2:1.72881655855;ZNF143:1.70725791503;PAX8:1.69594560509;E2F1..5:1.64751053712;ADNP_IRX_SIX_ZHX:1.55449713845;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.51508691988;AHR_ARNT_ARNT2:1.49302726441;bHLH_family:1.40575007524;YY1:1.34468392179;FOXN1:1.32844327621;CRX:1.29692979861;RBPJ:1.2937253827;NKX2-1,4:1.262133676;POU3F1..4:1.25327387293;ARID5B:1.22223715458;PAX3,7:1.21939881864;EN1,2:1.20588744286;ELK1,4_GABP{A,B1}:1.12381326484;ZFP161:1.12374398686;FOXA2:1.10342164362;HBP1_HMGB_SSRP1_UBTF:1.03287086218;PITX1..3:0.958099684538;FOX{I1,J2}:0.94154155863;HOXA9_MEIS1:0.927127980825;GFI1:0.913122585783;ALX1:0.910476331777;CDX1,2,4:0.827018912501;MYB:0.814804398648;HOX{A6,A7,B6,B7}:0.806389516773;TOPORS:0.761184244165;NR6A1:0.745190208031;TFDP1:0.729826235533;EVI1:0.704061571189;HOX{A5,B5}:0.699806717267;XBP1:0.600581559933;SOX17:0.586432831681;STAT1,3:0.573935113795;POU1F1:0.571014704521;FOXM1:0.562337495169;NANOG:0.534423381934;STAT5{A,B}:0.526984380336;CREB1:0.515206457935;PAX4:0.500790386917;GATA6:0.460045607102;CUX2:0.457609874809;NANOG{mouse}:0.43615358864;MEF2{A,B,C,D}:0.431736028761;AIRE:0.421698336856;RFX2..5_RFXANK_RFXAP:0.402040252364;TGIF1:0.391288144825;SOX{8,9,10}:0.385164427868;PRDM1:0.376682361546;KLF4:0.375237885964;SNAI1..3:0.374842837385;PPARG:0.372662911419;ZEB1:0.366278300865;BPTF:0.359147796139;POU2F1..3:0.344753428713;GATA4:0.331010201537;CDC5L:0.316754342669;OCT4_SOX2{dimer}:0.314644249414;HES1:0.307746522496;AR:0.302451540413;FOX{D1,D2}:0.28136764393;NR5A1,2:0.26687907373;FOXP1:0.256845507707;POU5F1:0.255352780199;RFX1:0.239213716663;HIF1A:0.218422545226;PRRX1,2:0.191579907619;ZBTB16:0.187883611054;LHX3,4:0.187577518461;IKZF1:0.185819216769;ESRRA:0.14645565542;ZIC1..3:0.125454904035;MYOD1:0.108392789099;T:0.0904552276818;GTF2I:0.0889239456495;LMO2:0.0699428406322;ONECUT1,2:0.068376591127;HAND1,2:0.054147192319;RORA:0.0465360210853;ATF5_CREB3:0.0458073933148;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.045360691967;SOX2:0.0395360581626;ATF4:0.0379604828059;DBP:-0.00303755273579;MYBL2:-0.0228598714444;MZF1:-0.046995713051;IKZF2:-0.0488261430524;HNF1A:-0.0589880621325;RREB1:-0.0745585080068;PAX2:-0.0832789969085;SP1:-0.0885244483575;SREBF1,2:-0.101416045098;GFI1B:-0.104996837824;HNF4A_NR2F1,2:-0.107447011131;MED-1{core}:-0.1252733284;ELF1,2,4:-0.132779161356;NHLH1,2:-0.167063220066;PAX6:-0.167740618189;HOX{A4,D4}:-0.172367457283;POU6F1:-0.17926069617;FOXP3:-0.185986263764;HMGA1,2:-0.188443216436;GTF2A1,2:-0.199165540711;TFAP2{A,C}:-0.222542988601;HIC1:-0.228476767197;PAX1,9:-0.235026639226;MYFfamily:-0.248531644474;FOX{F1,F2,J1}:-0.256036333258;PAX5:-0.26205738234;ZBTB6:-0.272487591217;NFIL3:-0.273692055173;FOSL2:-0.28454948874;ATF6:-0.290358481329;HLF:-0.294005915821;ATF2:-0.345767432355;NFKB1_REL_RELA:-0.388864102978;TLX2:-0.392862552777;PATZ1:-0.394322392166;TAL1_TCF{3,4,12}:-0.402438970131;SOX5:-0.413271409937;IRF7:-0.428344098919;NKX3-2:-0.429264394255;NFIX:-0.434123333347;DMAP1_NCOR{1,2}_SMARC:-0.445863932635;RUNX1..3:-0.453894259164;TFAP2B:-0.496598492936;EGR1..3:-0.505985881542;FOS_FOS{B,L1}_JUN{B,D}:-0.509879953172;TFAP4:-0.511286027919;CEBPA,B_DDIT3:-0.521092737271;FOXD3:-0.577759125777;SPIB:-0.590301819918;UFEwm:-0.606153948448;NFE2L2:-0.618826125846;NFE2:-0.648360225642;NKX3-1:-0.651458935667;TEAD1:-0.6582657243;SPI1:-0.677010496589;BACH2:-0.67876172525;MTE{core}:-0.686190252323;REST:-0.697045677559;EBF1:-0.702839472783;FOXO1,3,4:-0.733758792535;ZNF384:-0.750141047978;JUN:-0.794941540529;TLX1..3_NFIC{dimer}:-0.839500441447;GCM1,2:-0.84570382142;NR3C1:-0.876156120504;NKX2-2,8:-0.892557325888;SMAD1..7,9:-0.937885039573;NFATC1..3:-0.966986640434;TBP:-0.978430767268;XCPE1{core}:-0.99620127631;MAFB:-0.99785527233;IRF1,2:-1.00734321065;FOXL1:-1.0127587303;ETS1,2:-1.01903136134;ZNF238:-1.05885099662;MTF1:-1.06546871332;ALX4:-1.06795764866;GZF1:-1.07284555336;MAZ:-1.08865474516;RXR{A,B,G}:-1.09698949431;HSF1,2:-1.11850391887;TP53:-1.15754937655;ZNF148:-1.18982100179;NR1H4:-1.34380987574;ESR1:-1.34756386002;TBX4,5:-1.46169677784;GLI1..3:-1.51703278451;NFE2L1:-1.5783418277;SRF:-1.58839028171;RXRA_VDR{dimer}:-1.60277761184;STAT2,4,6:-1.62781881598;SPZ1:-1.79771536599;HMX1:-1.9341548219;EP300:-2.12562833946;TFCP2:-2.13000104565;ZNF423:-2.14639859329
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10420-106C6;search_select_hide=table117:FF:10420-106C6
}}
}}

Latest revision as of 14:00, 3 June 2020

Name:colon carcinoma cell line:COLO-320
Species:Human (Homo sapiens)
Library ID:CNhs10737
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecolon
dev stage55 year old adult
sexfemale
age55
cell typeunclassifiable
cell lineCOLO-320
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005237
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10737 CAGE DRX007863 DRR008735
Accession ID Hg19

Library idBAMCTSS
CNhs10737 DRZ000160 DRZ001545
Accession ID Hg38

Library idBAMCTSS
CNhs10737 DRZ011510 DRZ012895
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005237
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10063 RNA-Seq DRX057120 DRR062879
Accession ID Hg19

Library idBAMCTSS
RDhi10063 DRZ007955


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0221
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.6
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0885
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0551
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.277
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.32
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.359
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.481
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma1.149
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10737

Jaspar motifP-value
MA0002.20.00203
MA0003.10.23
MA0004.10.0443
MA0006.10.122
MA0007.10.52
MA0009.10.993
MA0014.10.947
MA0017.10.0286
MA0018.20.185
MA0019.10.659
MA0024.13.30143e-5
MA0025.10.149
MA0027.10.109
MA0028.10.0222
MA0029.10.768
MA0030.10.932
MA0031.10.426
MA0035.20.706
MA0038.13.71289e-5
MA0039.20.835
MA0040.10.701
MA0041.10.279
MA0042.10.476
MA0043.10.0055
MA0046.10.923
MA0047.20.816
MA0048.10.35
MA0050.11.80614e-8
MA0051.10.00939
MA0052.10.375
MA0055.10.136
MA0057.10.114
MA0058.10.014
MA0059.10.0402
MA0060.14.00892e-19
MA0061.10.0585
MA0062.20.0418
MA0065.20.151
MA0066.10.261
MA0067.10.692
MA0068.10.0298
MA0069.10.515
MA0070.10.106
MA0071.10.977
MA0072.10.805
MA0073.10.565
MA0074.10.331
MA0076.10.00329
MA0077.10.652
MA0078.10.158
MA0079.20.318
MA0080.24.82585e-10
MA0081.10.041
MA0083.19.77903e-6
MA0084.10.55
MA0087.10.178
MA0088.10.0316
MA0090.10.102
MA0091.10.125
MA0092.10.0266
MA0093.10.0169
MA0099.28.87205e-15
MA0100.10.188
MA0101.10.254
MA0102.20.0127
MA0103.10.785
MA0104.20.00168
MA0105.10.0691
MA0106.10.189
MA0107.10.0689
MA0108.20.0199
MA0111.10.929
MA0112.20.00239
MA0113.10.531
MA0114.10.408
MA0115.10.838
MA0116.10.0707
MA0117.10.712
MA0119.10.35
MA0122.10.667
MA0124.10.78
MA0125.10.0596
MA0131.10.317
MA0135.10.109
MA0136.11.82122e-6
MA0137.20.058
MA0138.20.216
MA0139.10.383
MA0140.10.505
MA0141.10.926
MA0142.10.0585
MA0143.10.998
MA0144.10.00614
MA0145.10.0445
MA0146.10.126
MA0147.10.00273
MA0148.10.57
MA0149.10.238
MA0150.10.00487
MA0152.10.765
MA0153.10.576
MA0154.10.0313
MA0155.10.135
MA0156.10.014
MA0157.10.588
MA0159.10.204
MA0160.10.518
MA0162.10.169
MA0163.10.0594
MA0164.10.984
MA0258.10.0471
MA0259.10.0202



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10737

Novel motifP-value
10.705
100.751
1000.871
1010.733
1020.694
1030.358
1040.616
1050.845
1062.29208e-5
1070.0147
1080.669
1090.172
110.159
1100.552
1110.39
1120.0544
1130.18
1140.0914
1150.246
1160.508
1170.839
1180.764
1190.157
120.53
1200.571
1210.764
1220.527
1230.807
1240.909
1250.899
1260.946
1270.652
1280.0252
1290.666
130.904
1300.708
1310.0226
1320.718
1330.752
1340.855
1350.0125
1360.885
1370.223
1380.165
1390.0886
140.4
1400.721
1410.215
1420.41
1430.063
1440.831
1450.189
1460.922
1470.535
1480.074
1490.0476
150.66
1500.295
1510.186
1520.00952
1530.535
1540.972
1550.947
1560.973
1570.444
1580.892
1590.777
160.289
1600.568
1610.744
1620.517
1630.71
1640.946
1650.216
1660.667
1670.159
1680.27
1690.0217
170.15
180.287
190.115
20.202
200.345
210.414
220.153
230.00381
240.756
250.587
260.295
270.113
280.949
290.99
30.312
300.277
310.495
320.0043
330.812
340.214
350.793
360.511
370.0561
380.57
390.224
40.511
400.718
410.351
420.877
430.0977
440.106
450.322
460.184
470.831
480.457
490.263
50.23
500.546
510.769
520.115
530.523
540.421
550.0282
560.378
570.729
580.355
590.0142
60.43
600.0146
610.937
620.221
630.113
640.814
650.0299
660.04
670.861
680.933
690.157
70.999
700.0261
710.319
720.204
730.0163
740.672
750.837
760.445
770.0577
780.966
790.0265
80.325
800.364
810.456
820.0229
830.384
840.258
850.00888
860.602
870.642
880.859
890.0818
90.109
900.288
910.0217
920.181
930.163
940.0309
950.189
960.25
970.817
980.635
990.563



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10737


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002253 (epithelial cell of large intestine)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001052 (rectum)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101913 (colonic adenocarcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100797 (colonic cancer cell line)
0101532 (rectal cancer cell line sample)
0101914 (colorectal adenocarcinoma cell line sample)
0101616 (colorectal cancer cell line sample)
0102047 (Colo-320 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)

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