FFCP PHASE1:Mm9::chr11:6558513..6558577,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:6558513..6558577,+
|short_description=p1@Ramp3
|description=CAGE_peak_1_at_Ramp3_5end
|association_with_transcript=0bp_to_ENSMUST00000045374,ENSMUST000001...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=56089 | |EntrezGene=56089 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=Q9WUP1 | |UniProt=Q9WUP1 | ||
|association_with_transcript=0bp_to_ENSMUST00000045374,ENSMUST00000139540,NM_019511,uc007hzd.1,uc011xrk.1_5end | |||
|cluster_id=chr11:6558513..6558577,+ | |||
|description=CAGE_peak_1_at_Ramp3_5end | |||
|id=chr11:6558513..6558577,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0010314,4.09e-12,92;UBERON:0002346,9.30e-12,64;UBERON:0003075,9.30e-12,64;UBERON:0007284,9.30e-12,64;UBERON:0000073,1.98e-11,54;UBERON:0010371,1.04e-10,73;UBERON:0004121,2.46e-10,95;UBERON:0000924,2.46e-10,95;UBERON:0006601,2.46e-10,95;UBERON:0001016,5.87e-10,75;UBERON:0001017,6.76e-10,73;UBERON:0001049,1.04e-09,52;UBERON:0005068,1.04e-09,52;UBERON:0006241,1.04e-09,52;UBERON:0007135,1.04e-09,52;UBERON:0003056,3.29e-09,49;UBERON:0002616,6.01e-08,46;UBERON:0000955,8.40e-08,47;UBERON:0006238,8.40e-08,47;UBERON:0003080,1.69e-07,40;UBERON:0002780,2.99e-07,39;UBERON:0001890,2.99e-07,39;UBERON:0006240,2.99e-07,39;UBERON:0002021,6.33e-07,10;UBERON:0000411,6.33e-07,10;UBERON:0001950,6.33e-07,10 | |||
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| ||
|short_description=p1@Ramp3 | |||
}} | }} |
Latest revision as of 22:07, 1 October 2015
Short description: | p1@Ramp3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ramp3_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 0bp_to_ENSMUST00000045374, ENSMUST00000139540, NM_019511, uc007hzd.1, uc011xrk.1_5end |
EntrezGene: | Ramp3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 4.09e-12 | 92 |
neurectoderm | 9.30e-12 | 64 |
neural plate | 9.30e-12 | 64 |
presumptive neural plate | 9.30e-12 | 64 |
regional part of nervous system | 1.98e-11 | 54 |
ecto-epithelium | 1.04e-10 | 73 |
ectoderm-derived structure | 2.46e-10 | 95 |
ectoderm | 2.46e-10 | 95 |
presumptive ectoderm | 2.46e-10 | 95 |
nervous system | 5.87e-10 | 75 |
central nervous system | 6.76e-10 | 73 |
neural tube | 1.04e-09 | 52 |
neural rod | 1.04e-09 | 52 |
future spinal cord | 1.04e-09 | 52 |
neural keel | 1.04e-09 | 52 |
pre-chordal neural plate | 3.29e-09 | 49 |
regional part of brain | 6.01e-08 | 46 |
brain | 8.40e-08 | 47 |
future brain | 8.40e-08 | 47 |
anterior neural tube | 1.69e-07 | 40 |
regional part of forebrain | 2.99e-07 | 39 |
forebrain | 2.99e-07 | 39 |
future forebrain | 2.99e-07 | 39 |
occipital lobe | 6.33e-07 | 10 |
visual cortex | 6.33e-07 | 10 |
neocortex | 6.33e-07 | 10 |