FFCP PHASE1:Mm9::chr12:119539843..119539899,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:119539843..119539899,-
|short_description=p1@Sp4
|description=CAGE_peak_1_at_Sp4_5end
|association_with_transcript=13bp_to_ENSMUST00000026367,NM_001166385...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=20688 | |EntrezGene=20688 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2774 | |||
|TSSclassifier=NA | |||
|UniProt=Q62445,Q6DFV2 | |UniProt=Q62445,Q6DFV2 | ||
|association_with_transcript=13bp_to_ENSMUST00000026367,NM_001166385,NM_009239,uc007pif.2,uc011yvt.1_5end | |||
|cluster_id=chr12:119539843..119539899,- | |||
|description=CAGE_peak_1_at_Sp4_5end | |||
|id=chr12:119539843..119539899,- | |||
|ontology_enrichment_celltype=CL:0000117!2.08e-08!23;CL:0000337!2.08e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.06e-08,23;CL:0000337,2.06e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!7.79e-20!94;UBERON:0007811!1.40e-19!86;UBERON:0000033!1.07e-14!63;UBERON:0003056!5.93e-13!49;UBERON:0000955!3.61e-12!50;UBERON:0006238!3.61e-12!50;UBERON:0001049!8.75e-12!52;UBERON:0005068!8.75e-12!52;UBERON:0006241!8.75e-12!52;UBERON:0007135!8.75e-12!52;UBERON:0002616!1.31e-11!49;UBERON:0002346!1.39e-10!71;UBERON:0003075!1.39e-10!71;UBERON:0007284!1.39e-10!71;UBERON:0002020!1.87e-10!34;UBERON:0003080!3.49e-10!40;UBERON:0002780!7.52e-10!39;UBERON:0001890!7.52e-10!39;UBERON:0006240!7.52e-10!39;UBERON:0002791!1.53e-09!29;UBERON:0003528!1.53e-09!29;UBERON:0001893!1.53e-09!29;UBERON:0001017!1.98e-09!73;UBERON:0005743!1.98e-09!73;UBERON:0000477!7.79e-09!154;UBERON:0000073!1.64e-08!75;UBERON:0001016!1.64e-08!75;UBERON:0000475!1.91e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.43e-14,64;UBERON:0003075,9.43e-14,64;UBERON:0007284,9.43e-14,64;UBERON:0003056,5.83e-13,49;UBERON:0000073,1.17e-12,54;UBERON:0001049,8.62e-12,52;UBERON:0005068,8.62e-12,52;UBERON:0006241,8.62e-12,52;UBERON:0007135,8.62e-12,52;UBERON:0000955,5.79e-11,47;UBERON:0006238,5.79e-11,47;UBERON:0010371,1.02e-10,73;UBERON:0002020,1.85e-10,34;UBERON:0002616,2.03e-10,46;UBERON:0003080,3.45e-10,40;UBERON:0010314,5.44e-10,92;UBERON:0002780,7.43e-10,39;UBERON:0001890,7.43e-10,39;UBERON:0006240,7.43e-10,39;UBERON:0003528,1.51e-09,29;UBERON:0002791,1.51e-09,29;UBERON:0001893,1.51e-09,29;UBERON:0001017,1.65e-09,73;UBERON:0001016,1.39e-08,75;UBERON:0004121,2.11e-08,95;UBERON:0000924,2.11e-08,95;UBERON:0006601,2.11e-08,95;UBERON:0007811,3.23e-07,36;UBERON:0000153,8.59e-07,43 | |||
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| ||
|short_description=p1@Sp4 | |||
}} | }} |
Latest revision as of 10:49, 26 September 2015
Short description: | p1@Sp4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sp4_5end |
Coexpression cluster: | MCL_coexpression_mm9:2774 |
Association with transcript: | 13bp_to_ENSMUST00000026367, NM_001166385, NM_009239, uc007pif.2, uc011yvt.1_5end |
EntrezGene: | Sp4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.06e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.06e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 9.43e-14 | 64 |
neural plate | 9.43e-14 | 64 |
presumptive neural plate | 9.43e-14 | 64 |
pre-chordal neural plate | 5.83e-13 | 49 |
regional part of nervous system | 1.17e-12 | 54 |
neural tube | 8.62e-12 | 52 |
neural rod | 8.62e-12 | 52 |
future spinal cord | 8.62e-12 | 52 |
neural keel | 8.62e-12 | 52 |
brain | 5.79e-11 | 47 |
future brain | 5.79e-11 | 47 |
ecto-epithelium | 1.02e-10 | 73 |
gray matter | 1.85e-10 | 34 |
regional part of brain | 2.03e-10 | 46 |
anterior neural tube | 3.45e-10 | 40 |
structure with developmental contribution from neural crest | 5.44e-10 | 92 |
regional part of forebrain | 7.43e-10 | 39 |
forebrain | 7.43e-10 | 39 |
future forebrain | 7.43e-10 | 39 |
brain grey matter | 1.51e-09 | 29 |
regional part of telencephalon | 1.51e-09 | 29 |
telencephalon | 1.51e-09 | 29 |
central nervous system | 1.65e-09 | 73 |
nervous system | 1.39e-08 | 75 |
ectoderm-derived structure | 2.11e-08 | 95 |
ectoderm | 2.11e-08 | 95 |
presumptive ectoderm | 2.11e-08 | 95 |
craniocervical region | 3.23e-07 | 36 |
anterior region of body | 8.59e-07 | 43 |