FF:10639-108I9: Difference between revisions

Latest revision as of 14:32, 3 June 2020

Name:	serous adenocarcinoma cell line:JHOS-2
Species:	Human (Homo sapiens)
Library ID:	CNhs11746
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ovary
dev stage	NA
sex	female
age	45
cell type	unclassifiable
cell line	JHOS-2
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005011

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11746		CAGE		DRX007998		DRR008870

Accession ID Hg19

Library id		BAM		CTSS
CNhs11746		DRZ000295		DRZ001680

Accession ID Hg38

Library id		BAM		CTSS
CNhs11746		DRZ011645		DRZ013030

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0751
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.24
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.104
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0896
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0896
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00203
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0875
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.147
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0896
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.068
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.126
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.452
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.332
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0196
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0896
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0896
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0896
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	2.599165e-4
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.226
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0357
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.452
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11746

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.49065e-4
MA0003.1	MA0003.1	0.837
MA0004.1	MA0004.1	0.101
MA0006.1	MA0006.1	0.351
MA0007.1	MA0007.1	0.398
MA0009.1	MA0009.1	0.651
MA0014.1	MA0014.1	0.125
MA0017.1	MA0017.1	0.0614
MA0018.2	MA0018.2	0.125
MA0019.1	MA0019.1	0.741
MA0024.1	MA0024.1	0.00247
MA0025.1	MA0025.1	0.0911
MA0027.1	MA0027.1	0.868
MA0028.1	MA0028.1	0.04
MA0029.1	MA0029.1	0.615
MA0030.1	MA0030.1	0.0244
MA0031.1	MA0031.1	0.608
MA0035.2	MA0035.2	0.135
MA0038.1	MA0038.1	0.18
MA0039.2	MA0039.2	0.0141
MA0040.1	MA0040.1	0.261
MA0041.1	MA0041.1	0.717
MA0042.1	MA0042.1	0.317
MA0043.1	MA0043.1	0.351
MA0046.1	MA0046.1	0.424
MA0047.2	MA0047.2	0.591
MA0048.1	MA0048.1	0.747
MA0050.1	MA0050.1	0.437
MA0051.1	MA0051.1	0.00473
MA0052.1	MA0052.1	0.936
MA0055.1	MA0055.1	0.256
MA0057.1	MA0057.1	0.223
MA0058.1	MA0058.1	0.0387
MA0059.1	MA0059.1	0.0323
MA0060.1	MA0060.1	2.15637e-4
MA0061.1	MA0061.1	0.244
MA0062.2	MA0062.2	0.237
MA0065.2	MA0065.2	0.0272
MA0066.1	MA0066.1	0.0677
MA0067.1	MA0067.1	0.346
MA0068.1	MA0068.1	0.931
MA0069.1	MA0069.1	0.197
MA0070.1	MA0070.1	0.664
MA0071.1	MA0071.1	0.352
MA0072.1	MA0072.1	0.764
MA0073.1	MA0073.1	0.765
MA0074.1	MA0074.1	0.751
MA0076.1	MA0076.1	0.0551
MA0077.1	MA0077.1	0.193
MA0078.1	MA0078.1	0.317
MA0079.2	MA0079.2	0.127
MA0080.2	MA0080.2	2.04078e-7
MA0081.1	MA0081.1	0.0267
MA0083.1	MA0083.1	0.505
MA0084.1	MA0084.1	0.619
MA0087.1	MA0087.1	0.392
MA0088.1	MA0088.1	0.0317
MA0090.1	MA0090.1	1.91406e-4
MA0091.1	MA0091.1	0.0104
MA0092.1	MA0092.1	0.309
MA0093.1	MA0093.1	0.102
MA0099.2	MA0099.2	0.0749
MA0100.1	MA0100.1	0.616
MA0101.1	MA0101.1	0.776
MA0102.2	MA0102.2	0.953
MA0103.1	MA0103.1	9.78089e-4
MA0104.2	MA0104.2	0.0273
MA0105.1	MA0105.1	6.46911e-5
MA0106.1	MA0106.1	0.243
MA0107.1	MA0107.1	0.896
MA0108.2	MA0108.2	0.0414
MA0111.1	MA0111.1	0.635
MA0112.2	MA0112.2	0.0189
MA0113.1	MA0113.1	0.275
MA0114.1	MA0114.1	0.105
MA0115.1	MA0115.1	0.994
MA0116.1	MA0116.1	8.95808e-6
MA0117.1	MA0117.1	0.438
MA0119.1	MA0119.1	0.225
MA0122.1	MA0122.1	0.391
MA0124.1	MA0124.1	0.27
MA0125.1	MA0125.1	0.128
MA0131.1	MA0131.1	0.344
MA0135.1	MA0135.1	0.438
MA0136.1	MA0136.1	0.00123
MA0137.2	MA0137.2	0.336
MA0138.2	MA0138.2	8.05668e-4
MA0139.1	MA0139.1	0.94
MA0140.1	MA0140.1	0.0565
MA0141.1	MA0141.1	0.0303
MA0142.1	MA0142.1	0.979
MA0143.1	MA0143.1	0.563
MA0144.1	MA0144.1	0.418
MA0145.1	MA0145.1	0.809
MA0146.1	MA0146.1	0.73
MA0147.1	MA0147.1	0.0743
MA0148.1	MA0148.1	0.492
MA0149.1	MA0149.1	0.991
MA0150.1	MA0150.1	0.0297
MA0152.1	MA0152.1	0.899
MA0153.1	MA0153.1	0.261
MA0154.1	MA0154.1	9.97126e-4
MA0155.1	MA0155.1	0.504
MA0156.1	MA0156.1	0.0271
MA0157.1	MA0157.1	0.489
MA0159.1	MA0159.1	0.635
MA0160.1	MA0160.1	0.26
MA0162.1	MA0162.1	0.654
MA0163.1	MA0163.1	6.14117e-6
MA0164.1	MA0164.1	0.45
MA0258.1	MA0258.1	0.00469
MA0259.1	MA0259.1	0.17

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11746

Novel motif	Logo	P-value
1	1	0.103
10	10	0.351
100	100	0.969
101	101	0.297
102	102	0.51
103	103	0.101
104	104	0.707
105	105	0.622
106	106	0.793
107	107	0.586
108	108	0.812
109	109	0.564
11	11	0.0335
110	110	0.13
111	111	0.255
112	112	0.169
113	113	0.608
114	114	0.033
115	115	0.811
116	116	0.469
117	117	0.308
118	118	0.813
119	119	0.219
12	12	0.594
120	120	0.496
121	121	0.481
122	122	0.671
123	123	0.0933
124	124	0.0201
125	125	0.426
126	126	0.962
127	127	0.758
128	128	0.187
129	129	0.758
13	13	0.657
130	130	0.702
131	131	0.463
132	132	0.51
133	133	0.06
134	134	0.326
135	135	0.00478
136	136	0.0109
137	137	0.249
138	138	0.0769
139	139	0.00268
14	14	0.687
140	140	0.109
141	141	0.84
142	142	0.614
143	143	5.74488e-4
144	144	0.253
145	145	0.365
146	146	0.998
147	147	0.684
148	148	0.0428
149	149	0.103
15	15	0.196
150	150	0.853
151	151	0.406
152	152	0.121
153	153	0.298
154	154	0.97
155	155	0.548
156	156	0.691
157	157	0.579
158	158	0.388
159	159	0.968
16	16	0.648
160	160	0.125
161	161	0.177
162	162	0.457
163	163	0.44
164	164	0.682
165	165	0.993
166	166	0.186
167	167	0.335
168	168	0.987
169	169	0.313
17	17	0.424
18	18	0.047
19	19	0.11
2	2	0.626
20	20	0.22
21	21	0.861
22	22	0.381
23	23	0.194
24	24	0.896
25	25	0.589
26	26	0.898
27	27	0.341
28	28	0.705
29	29	0.868
3	3	0.0642
30	30	0.78
31	31	0.213
32	32	0.00535
33	33	0.607
34	34	0.23
35	35	0.0195
36	36	0.0145
37	37	0.739
38	38	0.569
39	39	0.827
4	4	0.42
40	40	0.377
41	41	0.051
42	42	0.265
43	43	0.136
44	44	0.757
45	45	0.82
46	46	0.13
47	47	0.15
48	48	0.223
49	49	0.0661
5	5	0.14
50	50	0.999
51	51	0.137
52	52	0.531
53	53	0.255
54	54	0.111
55	55	0.728
56	56	0.554
57	57	0.459
58	58	0.248
59	59	0.086
6	6	0.892
60	60	0.512
61	61	0.731
62	62	0.0472
63	63	0.485
64	64	0.173
65	65	0.179
66	66	0.974
67	67	0.7
68	68	5.87428e-4
69	69	0.962
7	7	0.463
70	70	0.147
71	71	0.368
72	72	0.49
73	73	0.87
74	74	0.0099
75	75	0.31
76	76	0.739
77	77	0.555
78	78	0.965
79	79	0.0216
8	8	0.0591
80	80	0.13
81	81	0.0782
82	82	0.00437
83	83	0.191
84	84	0.883
85	85	0.0175
86	86	0.194
87	87	0.14
88	88	0.549
89	89	0.343
9	9	0.143
90	90	0.244
91	91	0.131
92	92	0.214
93	93	0.49
94	94	0.0137
95	95	0.665
96	96	0.0728
97	97	0.942
98	98	0.144
99	99	0.446

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11746

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103803 serous adenocarcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
3001 (female reproductive endometrioid cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103803 (serous adenocarcinoma cell line sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100658 (uterine adenocarcinoma cell sample)
0101555 (endometrial cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005011
-|accession_numbers=CAGE;DRX007998;DRR008870;DRZ000295;DRZ001680
+|accession_numbers=CAGE;DRX007998;DRR008870;DRZ000295;DRZ001680;DRZ011645;DRZ013030
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:201979703..201979721,+!p2@ELF3!2.40!247.66!ELF3;;chr1:201979743..201979762,+!p1@ELF3!2.17!147.54!ELF3;;chr2:114036488..114036504,-!p1@PAX8!2.15!141.36!PAX8;;chr6:126240380..126240430,+!p2@NCOA7!1.90!197.26!NCOA7;;chr11:34642612..34642646,+!p1@EHF!1.73!53.15!EHF;;chr20:55204351..55204377,+!p1@TFAP2C!1.62!51.09!TFAP2C;;chr6:126240442..126240459,+!p4@NCOA7!1.60!49.26!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!1.53!40.32!NCOA7;;chr3:111314186..111314204,-!p1@ZBED2!1.52!32.30!ZBED2;;chr8:55370487..55370503,+!p1@SOX17!1.52!32.07!SOX17;;chr12:52445218..52445237,+!p1@NR4A1!1.49!358.78!NR4A1;;chr19:36391434..36391450,-!p1@NFKBID!1.34!40.09!NFKBID;;chr17:74137321..74137337,-!p1@FOXJ1!1.33!20.16!FOXJ1;;chr13:73633131..73633149,+!p1@KLF5!1.28!186.26!KLF5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!18.10!ZBED1;;chr6:126240463..126240489,+!p6@NCOA7!1.24!18.56!NCOA7;;chr1:209979467..209979494,-!p1@IRF6!1.24!18.56!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.24!16.27!GRHL2;;chr19:53496768..53496799,-!p1@ZNF702P!1.20!22.91!ZNF702P;;chr10:64576105..64576133,-!p1@EGR2!1.16!27.72!EGR2;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.70!NFATC2;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.54!TFAP2A;;chr3:101546827..101546847,+!p2@NFKBIZ!1.14!17.87!NFKBIZ;;chr9:102584159..102584174,+!p2@NR4A3!1.10!21.08!NR4A3;;chr15:67418047..67418093,+!p4@SMAD3!1.09!14.20!SMAD3;;chr14:38064429..38064486,-!p1@FOXA1!1.09!11.23!FOXA1;;chr15:67418177..67418204,+!p9@SMAD3!1.08!11.00!SMAD3;;chr1:212782094..212782109,+!p1@ATF3!1.07!290.74!ATF3;;chr19:45971246..45971265,+!p1@FOSB!1.07!200.70!FOSB;;chr22:38598086..38598105,+!p1@MAFF!1.05!109.74!MAFF;;chr6:126070769..126070801,+!p1@HEY2!1.05!11.91!HEY2;;chr12:57914286..57914304,-!p1@DDIT3!1.04!369.55!DDIT3;;chr17:70117153..70117174,+!p1@SOX9!1.03!100.81!SOX9;;chr6:19837592..19837621,+!p1@ID4!1.03!60.94!ID4;;chr1:37940170..37940190,+!p1@ZC3H12A!1.02!119.14!ZC3H12A;;chr6:28048343..28048354,+!p1@ZNF165!1.02!9.39!ZNF165;;chr10:119303078..119303169,+!p2@EMX2!1.02!9.39!EMX2;;chr6:152126790..152126828,+!p3@ESR1!0.99!8.71!ESR1;;chr8:22550982..22550999,-!p1@EGR3!0.98!24.74!EGR3;;chr3:24536253..24536328,-!p1@THRB!0.98!16.27!THRB;;chr6:10415484..10415508,-!p3@TFAP2A!0.98!8.48!TFAP2A;;chr14:35872962..35873025,-!p3@NFKBIA!0.96!20.85!NFKBIA;;chr6:91006518..91006570,-!p1@BACH2!0.96!19.02!BACH2;;chr15:67418119..67418162,+!p5@SMAD3!0.92!8.25!SMAD3;;chr2:10091815..10091864,+!p1@GRHL1!0.90!9.39!GRHL1;;chr3:32023232..32023273,+!p1@ZNF860!0.89!9.85!ZNF860;;chr11:65667884..65667895,-!p2@FOSL1!0.88!27.03!FOSL1;;chr1:935398..935465,-!p2@HES4!0.88!14.20!HES4;;chr20:51588873..51588953,+!p1@TSHZ2!0.88!8.94!TSHZ2;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.64!TBX20;;chr2:157189180..157189290,-!p1@NR4A2!0.87!35.28!NR4A2;;chr12:26277817..26277863,-!p2@BHLHE41!0.86!8.71!BHLHE41;;chr6:10415276..10415341,-!p2@TFAP2A!0.86!7.79!TFAP2A;;chr13:73636516..73636532,+!p3@KLF5!0.86!7.10!KLF5;;chr10:119302508..119302559,+!p5@EMX2!0.86!6.19!EMX2;;chr19:22817119..22817145,+!p1@ZNF492!0.83!9.85!ZNF492;;chr3:114343768..114343822,-!p1@ZBTB20!0.82!26.12!ZBTB20;;chr12:26277956..26277980,-!p1@BHLHE41!0.82!21.31!BHLHE41;;chr9:102584128..102584144,+!p3@NR4A3!0.82!11.23!NR4A3;;chr3:193853927..193853944,+!p1@HES1!0.81!193.37!HES1;;chr3:39195037..39195069,-!p2@CSRNP1!0.81!36.20!CSRNP1;;chr22:38598057..38598071,+!p3@MAFF!0.81!13.52!MAFF;;chr9:102584262..102584276,+!p1@NR4A3!0.81!12.83!NR4A3;;chr13:73636252..73636307,+!p2@KLF5!0.81!6.41!KLF5;;chr12:53625966..53626012,-!p2@RARG!0.80!15.12!RARG;;chr14:35872453..35872485,-!p2@NFKBIA!0.80!13.98!NFKBIA;;chr2:166326200..166326216,+!p1@CSRNP3!0.80!8.02!CSRNP3;;chr14:35873947..35873965,-!p1@NFKBIA!0.79!361.99!NFKBIA;;chr8:77593474..77593612,+!p1@ZFHX4!0.79!23.83!ZFHX4;;chr17:41623692..41623715,-!p1@ETV4!0.79!23.60!ETV4;;chr2:172967621..172967637,-!p1@DLX2!0.79!14.89!DLX2;;chr12:52431016..52431071,+!p4@NR4A1!0.79!6.19!NR4A1;;chrX:101186981..101187030,-!p1@ZMAT1!0.78!17.64!ZMAT1;;chr6:1312325..1312340,+!p1@FOXQ1!0.78!8.48!FOXQ1;;chr17:48072574..48072597,-!p1@DLX3!0.78!5.04!DLX3;;chr10:63809106..63809127,+!p1@ARID5B!0.77!72.40!ARID5B;;chr9:110252035..110252057,-!p1@KLF4!0.76!83.62!KLF4;;chr2:66662281..66662308,+!p1@MEIS1!0.76!17.87!MEIS1;;chr2:113982635..113982648,-!p8@PAX8!0.76!4.81!PAX8;;chr10:119302232..119302265,+!p1@EMX2!0.76!4.81!EMX2;;chr11:65554528..65554546,+!p1@OVOL1!0.76!4.81!OVOL1;;chr8:77593448..77593471,+!p2@ZFHX4!0.76!4.81!ZFHX4;;chr3:39195075..39195088,-!p1@CSRNP1!0.75!31.62!CSRNP1;;chr22:38597987..38598021,+!p2@MAFF!0.75!31.16!MAFF;;chr6:126240490..126240501,+!p11@NCOA7!0.75!4.58!NCOA7;;chr11:34642656..34642667,+!p2@EHF!0.75!4.58!EHF;;chr11:65554563..65554576,+!p2@OVOL1!0.75!4.58!OVOL1;;chr8:123793988..123794016,+!p1@ZHX2!0.74!8.48!ZHX2;;chr6:126112074..126112144,+!p1@NCOA7!0.73!64.84!NCOA7;;chr10:63809013..63809041,+!p3@ARID5B!0.73!27.03!ARID5B;;chr2:46524897..46524911,+!p2@EPAS1!0.73!13.29!EPAS1;;chr22:31739291..31739311,-!p2@PATZ1!0.73!4.35!PATZ1;;chr3:147111198..1471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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10639-108I9
 |is_a=EFO:0002091;;FF:0000210;;FF:0103803
 |is_obsolete=
 |library_id=CNhs11746
-|library_id_phase_based=1:CNhs11746
+|library_id_phase_based=2:CNhs11746
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10639
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10639
 |name=serous adenocarcinoma cell line:JHOS-2
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11746,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10639-108I9;search_select_hide=table117:FF:10639-108I9
 }}

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FF:10639-108I9: Difference between revisions

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Latest revision as of 14:32, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0