CL:0000731: Difference between revisions
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|located_in= | |located_in= | ||
|name=urothelial cell | |name=urothelial cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000365 | |part_of=UBERON:0000365 | ||
Latest revision as of 16:36, 12 September 2014
| Name: | urothelial cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." [GOC:tfm, MA:ma] | ||
| Xrefs: |
| ||
| Synonyms: |
"bladder transitional cell" NARROW [] "transitional epithelial cell of urinary bladder" NARROW [] "urinary tract transitional epithelial cell" NARROW [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000244(transitional epithelial cell) |
|---|---|
| part_of: | UBERON:0000365(urothelium) |
Children
| derives from: | FF:0000191 (human urothelial cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11216-116B1 (Urothelial cells, donor0)
- 11520-119H8 (Urothelial Cells, donor1)
- 11600-120H7 (Urothelial Cells, donor2)
- 11681-122H7 (Urothelial Cells, donor3)
Mouse (Mus musculus)
- 11216-116B1 (Urothelial cells, donor0)
- 11520-119H8 (Urothelial Cells, donor1)
- 11600-120H7 (Urothelial Cells, donor2)
- 11681-122H7 (Urothelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000731 (urothelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.31e-99 | FFCP PHASE2:Hg19::chr10:124050511..124050520,+#_3e532d3b70d84d4992f8fe8fab0552d1 | p9@BTBD16 |
| 8.31e-99 | FFCP PHASE1:Hg19::chr10:124050511..124050520,+#_3e532d3b70d84d4992f8fe8fab0552d1 | p9@BTBD16 |
| 7.02e-88 | FFCP PHASE2:Hg19::chr10:124050568..124050578,+#_5c28f913568f2b95ab4497d52332ae4e | p6@BTBD16 |
| 7.02e-88 | FFCP PHASE1:Hg19::chr10:124050568..124050578,+#_5c28f913568f2b95ab4497d52332ae4e | p6@BTBD16 |
| 6.32e-80 | FFCP PHASE1:Hg19::chr12:28125967..28125978,-#_1918fe242dcab565857be24e608cd5d0 | p16@PTHLH |
| 6.32e-80 | FFCP PHASE2:Hg19::chr12:28125967..28125978,-#_1918fe242dcab565857be24e608cd5d0 | p16@PTHLH |
| 1.16e-79 | FFCP PHASE1:Hg19::chr5:61213179..61213189,-#_9f355dcc95ca6d467c725c7248920766 | p@chr5:61213179..61213189, - |
| 1.16e-79 | FFCP PHASE2:Hg19::chr5:61213179..61213189,-#_9f355dcc95ca6d467c725c7248920766 | p@chr5:61213179..61213189, - |
| 3.32e-74 | FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_cc5be012dbf77661e8ce11cd679fc09e | p@chrX:102977640..102977644, - |
| 3.32e-74 | FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_cc5be012dbf77661e8ce11cd679fc09e | p@chrX:102977640..102977644, - |
| 4.26e-74 | FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_972088ad1cfc56fe2da1e1bf6e6ea2ea | p4@IFNK |
| 4.26e-74 | FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_972088ad1cfc56fe2da1e1bf6e6ea2ea | p4@IFNK |
| 2.23e-72 | FFCP PHASE1:Hg19::chr1:40492754..40492762,+#_de8e6ecd8392ddb80e5fb2ba5897a076 | p@chr1:40492754..40492762, + |
| 2.23e-72 | FFCP PHASE2:Hg19::chr1:40492754..40492762,+#_de8e6ecd8392ddb80e5fb2ba5897a076 | p@chr1:40492754..40492762, + |
| 2.68e-72 | FFCP PHASE2:Hg19::chr10:3954276..3954287,+#_9c24263bc2786734094b163f62c6616b | p@chr10:3954276..3954287, + |
| 2.68e-72 | FFCP PHASE1:Hg19::chr10:3954276..3954287,+#_9c24263bc2786734094b163f62c6616b | p@chr10:3954276..3954287, + |
| 3.47e-67 | FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_4c29262b132096021c51abb3401be07a | p17@PTHLH |
| 3.47e-67 | FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_4c29262b132096021c51abb3401be07a | p17@PTHLH |
| 2.4e-66 | FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_2f24fb813f467892c0faca82fbab0187 | p38@PTK2 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_2f24fb813f467892c0faca82fbab0187 | p38@PTK2 |
| 2.61e-64 | FFCP PHASE2:Hg19::chr5:61213127..61213133,-#_b7a38d3dc575fe58821c96951649c154 | p@chr5:61213127..61213133, - |
| 2.61e-64 | FFCP PHASE1:Hg19::chr5:61213127..61213133,-#_b7a38d3dc575fe58821c96951649c154 | p@chr5:61213127..61213133, - |
| 7.67e-64 | FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_ad0bd7ef3b0664b77614b50362557dee | p@chr21:44168074..44168079, + |
| 7.67e-64 | FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_ad0bd7ef3b0664b77614b50362557dee | p@chr21:44168074..44168079, + |
| 1.18e-63 | FFCP PHASE1:Hg19::chr4:125341514..125341526,-#_59f5c4d2e21aa05d454315fe0444b627 | p@chr4:125341514..125341526, - |
| 1.18e-63 | FFCP PHASE2:Hg19::chr4:125341514..125341526,-#_59f5c4d2e21aa05d454315fe0444b627 | p@chr4:125341514..125341526, - |
| 1.67e-61 | FFCP PHASE2:Hg19::chr10:127763979..127763984,+#_f72d26453e17addd7f7940349d6374c6 | p@chr10:127763979..127763984, + |
| 1.67e-61 | FFCP PHASE1:Hg19::chr10:127763979..127763984,+#_f72d26453e17addd7f7940349d6374c6 | p@chr10:127763979..127763984, + |
| 1.06e-56 | FFCP PHASE1:Hg19::chr11:127965855..127965866,+#_d665706a23c00dd48edc3d935dcdb616 | p@chr11:127965855..127965866, + |
| 1.06e-56 | FFCP PHASE2:Hg19::chr11:127965855..127965866,+#_d665706a23c00dd48edc3d935dcdb616 | p@chr11:127965855..127965866, + |
| 1.64e-56 | FFCP PHASE2:Hg19::chr19:15065111..15065171,-#_c3074331f92c04d89a2105e333d8f225 | p@chr19:15065111..15065171, - |
| 1.64e-56 | FFCP PHASE1:Hg19::chr19:15065111..15065171,-#_c3074331f92c04d89a2105e333d8f225 | p@chr19:15065111..15065171, - |
| 4.09e-54 | FFCP PHASE2:Hg19::chr10:124050535..124050566,+#_cf1ab2a3f9f4b4ba3d5e90c8f53ae722 | p3@BTBD16 |
| 4.09e-54 | FFCP PHASE1:Hg19::chr10:124050535..124050566,+#_cf1ab2a3f9f4b4ba3d5e90c8f53ae722 | p3@BTBD16 |
| 1.81e-53 | FFCP PHASE1:Hg19::chr6:151358048..151358060,+#_74b8b09fca0c5199b6b3af47dad4b406 | p13@MTHFD1L |
| 1.81e-53 | FFCP PHASE2:Hg19::chr6:151358048..151358060,+#_74b8b09fca0c5199b6b3af47dad4b406 | p13@MTHFD1L |
| 7.95e-53 | FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_a0b995a2faa2bff0621ffff0dc503f85 | p@chr7:2019948..2019961, - |
| 7.95e-53 | FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_a0b995a2faa2bff0621ffff0dc503f85 | p@chr7:2019948..2019961, - |
| 1.07e-50 | FFCP PHASE1:Hg19::chr7:150813498..150813509,+#_43db32ee9127653df30298331cfe9f11 | p30@AGAP3 |
| 1.07e-50 | FFCP PHASE2:Hg19::chr7:150813498..150813509,+#_43db32ee9127653df30298331cfe9f11 | p30@AGAP3 |
| 1.21e-50 | FFCP PHASE1:Hg19::chr2:31560793..31560814,-#_997ba793c342f088fbdae7c9e3c37ea0 | p@chr2:31560793..31560814, - |
| 1.21e-50 | FFCP PHASE2:Hg19::chr2:31560793..31560814,-#_997ba793c342f088fbdae7c9e3c37ea0 | p@chr2:31560793..31560814, - |
| 2.23e-50 | FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_1491a9f947eff489e2d8ae553f41c252 | p@chr13:20934450..20934456, + |
| 2.23e-50 | FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_1491a9f947eff489e2d8ae553f41c252 | p@chr13:20934450..20934456, + |
| 5.14e-50 | FFCP PHASE2:Hg19::chr14:85935018..85935023,-#_def7e2dca6d4bf14eedda7c2b956d2f0 | p@chr14:85935018..85935023, - |
| 5.14e-50 | FFCP PHASE1:Hg19::chr14:85935018..85935023,-#_def7e2dca6d4bf14eedda7c2b956d2f0 | p@chr14:85935018..85935023, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr9:113802868..113802878,-#_baa0f2516b20dc2a183ec73512699074 | p@chr9:113802868..113802878, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr9:21564382..21564387,-#_baa0f2516b20dc2a183ec73512699074 | p@chr9:21564382..21564387, - |
| 6.6e-50 | FFCP PHASE2:Hg19::chr9:113802868..113802878,-#_baa0f2516b20dc2a183ec73512699074 | p@chr9:113802868..113802878, - |
| 6.6e-50 | FFCP PHASE2:Hg19::chr9:21564382..21564387,-#_baa0f2516b20dc2a183ec73512699074 | p@chr9:21564382..21564387, - |
| 8.47e-50 | FFCP PHASE1:Hg19::chr19:43965689..43965700,-#_e180bc0f418a34940274ad55ca196979 | p@chr19:43965689..43965700, - |
| 8.47e-50 | FFCP PHASE2:Hg19::chr19:43965689..43965700,-#_e180bc0f418a34940274ad55ca196979 | p@chr19:43965689..43965700, - |
| 1.41e-49 | FFCP PHASE1:Hg19::chr14:51956090..51956101,+#_99a5eb4a7c4ec851e7121ad92cdc9e84 | p32@FRMD6 |
| 1.41e-49 | FFCP PHASE2:Hg19::chr14:51956090..51956101,+#_99a5eb4a7c4ec851e7121ad92cdc9e84 | p32@FRMD6 |
| 5.41e-48 | FFCP PHASE1:Hg19::chr21:45020721..45020728,-#_095649760dce2c2656ceef4afb1b0479 | p@chr21:45020721..45020728, - |
| 5.41e-48 | FFCP PHASE2:Hg19::chr21:45020721..45020728,-#_095649760dce2c2656ceef4afb1b0479 | p@chr21:45020721..45020728, - |
| 8.73e-48 | FFCP PHASE2:Hg19::chr8:143814087..143814102,-#_cd623da75e2f67066452075e4f75b15e | p@chr8:143814087..143814102, - |
| 8.73e-48 | FFCP PHASE1:Hg19::chr8:143814087..143814102,-#_cd623da75e2f67066452075e4f75b15e | p@chr8:143814087..143814102, - |
| 2.66e-45 | FFCP PHASE2:Hg19::chr1:183192299..183192310,+#_260db0b26125cec3426c13eaac605d2d | p@chr1:183192299..183192310, + |
| 2.66e-45 | FFCP PHASE1:Hg19::chr1:183192299..183192310,+#_260db0b26125cec3426c13eaac605d2d | p@chr1:183192299..183192310, + |
| 3.1e-45 | FFCP PHASE1:Hg19::chr4:125341479..125341498,-#_91e7526c0e89cbfc05ef1ed7cad03fce | p@chr4:125341479..125341498, - |
| 3.1e-45 | FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_91e7526c0e89cbfc05ef1ed7cad03fce | p@chr2:20402306..20402318, - |
| 3.1e-45 | FFCP PHASE2:Hg19::chr4:125341479..125341498,-#_91e7526c0e89cbfc05ef1ed7cad03fce | p@chr4:125341479..125341498, - |
| 3.1e-45 | FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_91e7526c0e89cbfc05ef1ed7cad03fce | p@chr2:20402306..20402318, - |
| 4.87e-45 | FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_c2b05a33d4ed3dae772132f1c3af30a5 | p1@IFNK |
| 4.87e-45 | FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_c2b05a33d4ed3dae772132f1c3af30a5 | p1@IFNK |
| 5.66e-45 | FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_9a02cc6167cbc5c4e1423a9eb55570aa | p@chr1:99387558..99387571, - |
| 5.66e-45 | FFCP PHASE1:Hg19::chr13:20805611..20805619,-#_9a02cc6167cbc5c4e1423a9eb55570aa | p6@GJB6 |
| 5.66e-45 | FFCP PHASE2:Hg19::chr13:20805611..20805619,-#_9a02cc6167cbc5c4e1423a9eb55570aa | p6@GJB6 |
| 5.66e-45 | FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_9a02cc6167cbc5c4e1423a9eb55570aa | p@chr1:99387558..99387571, - |
| 1.56e-43 | FFCP PHASE2:Hg19::chr10:124050485..124050505,+#_3ab7f8b903d33bf615d3fc81edb078e2 | p2@BTBD16 |
| 1.56e-43 | FFCP PHASE1:Hg19::chr10:124050485..124050505,+#_3ab7f8b903d33bf615d3fc81edb078e2 | p2@BTBD16 |
| 1.27e-41 | FFCP PHASE1:Hg19::chr1:183212642..183212654,+#_384e840eb5f204d6f5a404c7be25f203 | p@chr1:183212642..183212654, + |
| 1.27e-41 | FFCP PHASE2:Hg19::chr1:183212642..183212654,+#_384e840eb5f204d6f5a404c7be25f203 | p@chr1:183212642..183212654, + |
| 2.53e-41 | FFCP PHASE1:Hg19::chr5:149877396..149877405,+#_e3b7cf406ecea73d40e4c3307afa8631 | p19@NDST1 |
| 2.53e-41 | FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_e3b7cf406ecea73d40e4c3307afa8631 | p@chr6:44096519..44096530, - |
| 2.53e-41 | FFCP PHASE2:Hg19::chr5:149877396..149877405,+#_e3b7cf406ecea73d40e4c3307afa8631 | p19@NDST1 |
| 2.53e-41 | FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_e3b7cf406ecea73d40e4c3307afa8631 | p@chr6:44096519..44096530, - |
| 2.79e-41 | FFCP PHASE2:Hg19::chr13:20762566..20762577,-#_6e26265b268186c4a7d946a4f9a8ee43 | p@chr13:20762566..20762577, - |
| 2.79e-41 | FFCP PHASE1:Hg19::chr13:20762566..20762577,-#_6e26265b268186c4a7d946a4f9a8ee43 | p@chr13:20762566..20762577, - |
| 7.76e-41 | FFCP PHASE2:Hg19::chr5:146263947..146263959,-#_10a441bec20e0de83525fac098c74103 | p@chr5:146263947..146263959, - |
| 7.76e-41 | FFCP PHASE1:Hg19::chr5:146263947..146263959,-#_10a441bec20e0de83525fac098c74103 | p@chr5:146263947..146263959, - |
| 1.75e-40 | FFCP PHASE1:Hg19::chr1:183204832..183204840,+#_5cf1f14f147af7ba394723576c0358cd | p@chr1:183204832..183204840, + |
| 1.75e-40 | FFCP PHASE2:Hg19::chr1:183204832..183204840,+#_5cf1f14f147af7ba394723576c0358cd | p@chr1:183204832..183204840, + |
| 1.81e-40 | FFCP PHASE2:Hg19::chr21:39628993..39628998,+#_024ede693ef4f4e9a67bb77fbde84d81 | p25@KCNJ15 |
| 1.81e-40 | FFCP PHASE1:Hg19::chr21:39628993..39628998,+#_024ede693ef4f4e9a67bb77fbde84d81 | p25@KCNJ15 |
| 4.05e-40 | FFCP PHASE2:Hg19::chr2:31560770..31560779,-#_79a6e9e7932c13ec9b30b63578da3402 | p@chr2:31560770..31560779, - |
| 4.05e-40 | FFCP PHASE1:Hg19::chr2:31560770..31560779,-#_79a6e9e7932c13ec9b30b63578da3402 | p@chr2:31560770..31560779, - |
| 1.54e-39 | FFCP PHASE2:Hg19::chr10:3954241..3954256,+#_1a3e942c7f26b8389d5cdb845492fdca | p@chr10:3954241..3954256, + |
| 1.54e-39 | FFCP PHASE1:Hg19::chr10:3954241..3954256,+#_1a3e942c7f26b8389d5cdb845492fdca | p@chr10:3954241..3954256, + |
| 1.44e-38 | FFCP PHASE2:Hg19::chr1:183204785..183204796,+#_9cff2c2daadca6b1830e90489fe2b864 | p@chr1:183204785..183204796, + |
| 1.44e-38 | FFCP PHASE1:Hg19::chr1:183204785..183204796,+#_9cff2c2daadca6b1830e90489fe2b864 | p@chr1:183204785..183204796, + |
| 5.23e-38 | FFCP PHASE1:Hg19::chr3:52083895..52083904,-#_135c757d83602ca8dee82772e5386747 | p21@DUSP7 |
| 5.23e-38 | FFCP PHASE2:Hg19::chr3:52083895..52083904,-#_135c757d83602ca8dee82772e5386747 | p21@DUSP7 |
| 6.73e-38 | FFCP PHASE2:Hg19::chr1:183205712..183205723,+#_e8ec3f859dac0bc257b8e6df97b31fed | p@chr1:183205712..183205723, + |
| 6.73e-38 | FFCP PHASE1:Hg19::chr1:183205712..183205723,+#_e8ec3f859dac0bc257b8e6df97b31fed | p@chr1:183205712..183205723, + |
| 7.63e-38 | FFCP PHASE1:Hg19::chr2:43266741..43266748,-#_fe9d01d51cd37aa3f88a07e9e08b462d | p2@ENST00000449766 |
| 7.63e-38 | FFCP PHASE2:Hg19::chr2:43266741..43266748,-#_fe9d01d51cd37aa3f88a07e9e08b462d | p2@ENST00000449766 |
| 2.18e-37 | FFCP PHASE2:Hg19::chr13:20763282..20763295,-#_274b10cce634e9b73f270399a176b994 | p6@GJB2 |
| 2.18e-37 | FFCP PHASE1:Hg19::chr13:20763282..20763295,-#_274b10cce634e9b73f270399a176b994 | p6@GJB2 |
