CL:0002195: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=hepatic stem cell | |name=hepatic stem cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-08-30T02:00:42Z | |obo_creation_date=2010-08-30T02:00:42Z | ||
|part_of=UBERON:0002107 | |part_of=UBERON:0002107 | ||
Latest revision as of 16:41, 12 September 2014
| Name: | hepatic stem cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A stem cell that can give rise to the cells of the liver." [GOC:tfm] | ||
| Xrefs: |
| ||
| Created by: | tmeehan | ||
| Creation date: | 2010-08-30T02:00:42Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000048(multi fate stem cell) |
|---|---|
| part_of: | UBERON:0002107(liver) |
Children
| is a: | CL:0002571 (hepatic mesenchymal stem cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
- 11538-120A8 (Mesenchymal Stem Cells - hepatic, donor1)
- 11618-122A7 (Mesenchymal Stem Cells - hepatic, donor2)
- 11699-123A7
Mouse (Mus musculus)
- 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
- 11538-120A8 (Mesenchymal Stem Cells - hepatic, donor1)
- 11618-122A7 (Mesenchymal Stem Cells - hepatic, donor2)
- 11699-123A7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002195 (hepatic stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:148586717..148586723,+#_5818a7466da16b30cf400224b695b087 | p@chr5:148586717..148586723, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr10:91939935..91939941,+#_5818a7466da16b30cf400224b695b087 | p@chr10:91939935..91939941, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr10:91939935..91939941,+#_5818a7466da16b30cf400224b695b087 | p@chr10:91939935..91939941, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:148586717..148586723,+#_5818a7466da16b30cf400224b695b087 | p@chr5:148586717..148586723, + |
| 4.61e-131 | FFCP PHASE2:Hg19::chr20:35695582..35695602,-#_90cdff056508a9bfc43a5a7dd4638b8b | p@chr20:35695582..35695602, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr5:148600871..148600881,-#_90cdff056508a9bfc43a5a7dd4638b8b | p@chr5:148600871..148600881, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr20:35695582..35695602,-#_90cdff056508a9bfc43a5a7dd4638b8b | p@chr20:35695582..35695602, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr5:148600871..148600881,-#_90cdff056508a9bfc43a5a7dd4638b8b | p@chr5:148600871..148600881, - |
| 1.75e-130 | FFCP PHASE1:Hg19::chr4:175131715..175131722,+#_8524a5a74e926aae4f52907c3bbcd113 | p@chr4:175131715..175131722, + |
| 1.75e-130 | FFCP PHASE2:Hg19::chr4:175131715..175131722,+#_8524a5a74e926aae4f52907c3bbcd113 | p@chr4:175131715..175131722, + |
| 2.56e-98 | FFCP PHASE1:Hg19::chr14:65105965..65105968,-#_6a248fe59039a152bc11189e2f524ed7 | p@chr14:65105965..65105968, - |
| 2.56e-98 | FFCP PHASE2:Hg19::chr9:94955376..94955381,+#_6a248fe59039a152bc11189e2f524ed7 | p@chr9:94955376..94955381, + |
| 2.56e-98 | FFCP PHASE2:Hg19::chr14:65105965..65105968,-#_6a248fe59039a152bc11189e2f524ed7 | p@chr14:65105965..65105968, - |
| 2.56e-98 | FFCP PHASE1:Hg19::chr9:94955376..94955381,+#_6a248fe59039a152bc11189e2f524ed7 | p@chr9:94955376..94955381, + |
| 3.96e-66 | FFCP PHASE1:Hg19::chr22:25091949..25091962,-#_89667bc98b4c73dbe585fbf5481720e5 | p@chr22:25091949..25091962, - |
| 3.96e-66 | FFCP PHASE2:Hg19::chr22:25091949..25091962,-#_89667bc98b4c73dbe585fbf5481720e5 | p@chr22:25091949..25091962, - |
| 1.08e-65 | FFCP PHASE1:Hg19::chr20:49269691..49269695,+#_dc1a4f9b77c8af696f8e598c387eb17c | p1@ENST00000435177 |
| 1.08e-65 | FFCP PHASE2:Hg19::chr18:72618246..72618294,-#_dc1a4f9b77c8af696f8e598c387eb17c | p@chr18:72618246..72618294, - |
| 1.08e-65 | FFCP PHASE1:Hg19::chr18:72618246..72618294,-#_dc1a4f9b77c8af696f8e598c387eb17c | p@chr18:72618246..72618294, - |
| 1.08e-65 | FFCP PHASE2:Hg19::chr20:49269691..49269695,+#_dc1a4f9b77c8af696f8e598c387eb17c | p1@ENST00000435177 |
| 2.02e-57 | FFCP PHASE2:Hg19::chr10:92178805..92178827,+#_7b0a660f06c6ee8a8c7482d00216b4aa | p@chr10:92178805..92178827, + |
| 2.02e-57 | FFCP PHASE1:Hg19::chr10:92178805..92178827,+#_7b0a660f06c6ee8a8c7482d00216b4aa | p@chr10:92178805..92178827, + |
| 1.13e-56 | FFCP PHASE1:Hg19::chr4:86683248..86683251,+#_832445dc397b32f5f7a5c34fad129b98 | p@chr4:86683248..86683251, + |
| 1.13e-56 | FFCP PHASE2:Hg19::chr4:86683248..86683251,+#_832445dc397b32f5f7a5c34fad129b98 | p@chr4:86683248..86683251, + |
| 1.5e-56 | FFCP PHASE2:Hg19::chr9:112889870..112889881,+#_733a497ba1e0219d4eac63a792863637 | p24@AKAP2, p26@PALM2-AKAP2 |
| 1.5e-56 | FFCP PHASE1:Hg19::chr9:112889870..112889881,+#_733a497ba1e0219d4eac63a792863637 | p24@AKAP2, p26@PALM2-AKAP2 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr9:12701369..12701379,+#_b3c3b67f96b84221e35dc9a1ef5f3632 | p29@TYRP1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr9:12701369..12701379,+#_b3c3b67f96b84221e35dc9a1ef5f3632 | p29@TYRP1 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:55831402..55831405,-#_0549f77ecb78bed052ad4aedf61a66e3 | p19@SMEK2 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:55831402..55831405,-#_0549f77ecb78bed052ad4aedf61a66e3 | p19@SMEK2 |
| 5.15e-50 | FFCP PHASE2:Hg19::chr4:175135724..175135735,-#_04240ed90707be35f1ab77d890e250d3 | p@chr4:175135724..175135735, - |
| 5.15e-50 | FFCP PHASE1:Hg19::chr4:175135724..175135735,-#_04240ed90707be35f1ab77d890e250d3 | p@chr4:175135724..175135735, - |
| 1.09e-49 | FFCP PHASE2:Hg19::chr18:77558264..77558310,+#_dca1b7fd5f015d98da29c3f6050816ba | p@chr18:77558264..77558310, + |
| 1.09e-49 | FFCP PHASE1:Hg19::chr2:216995311..216995323,+#_dca1b7fd5f015d98da29c3f6050816ba | p27@XRCC5 |
| 1.09e-49 | FFCP PHASE1:Hg19::chr18:77558264..77558310,+#_dca1b7fd5f015d98da29c3f6050816ba | p@chr18:77558264..77558310, + |
| 1.09e-49 | FFCP PHASE2:Hg19::chr2:216995311..216995323,+#_dca1b7fd5f015d98da29c3f6050816ba | p27@XRCC5 |
| 4.0e-45 | FFCP PHASE2:Hg19::chr15:56208964..56208977,-#_5a6feb7ee24c79bf515e6eb14d3d26cd | p11@NEDD4 |
| 4.0e-45 | FFCP PHASE1:Hg19::chr15:56208964..56208977,-#_5a6feb7ee24c79bf515e6eb14d3d26cd | p11@NEDD4 |
| 7.83e-45 | FFCP PHASE1:Hg19::chr1:235123146..235123150,-#_b722bb6505d40a5fc6b79aceed5f0b68 | p@chr1:235123146..235123150, - |
| 7.83e-45 | FFCP PHASE2:Hg19::chr1:235123146..235123150,-#_b722bb6505d40a5fc6b79aceed5f0b68 | p@chr1:235123146..235123150, - |
| 3.99e-41 | FFCP PHASE1:Hg19::chr20:35695476..35695506,-#_824aa95e56d545d2152e1476b2e14f5e | p@chr20:35695476..35695506, - |
| 3.99e-41 | FFCP PHASE2:Hg19::chr20:35695476..35695506,-#_824aa95e56d545d2152e1476b2e14f5e | p@chr20:35695476..35695506, - |
| 5.99e-41 | FFCP PHASE1:Hg19::chr4:175131785..175131801,+#_957575f4c6ac102ef830e74f710d9170 | p@chr4:175131785..175131801, + |
| 5.99e-41 | FFCP PHASE2:Hg19::chr4:175131785..175131801,+#_957575f4c6ac102ef830e74f710d9170 | p@chr4:175131785..175131801, + |
| 6.7e-40 | FFCP PHASE2:Hg19::chr11:9588526..9588534,+#_1ca87ee639fa8eb75f0de51773ca327a | p@chr11:9588526..9588534, + |
| 6.7e-40 | FFCP PHASE1:Hg19::chr11:9588526..9588534,+#_1ca87ee639fa8eb75f0de51773ca327a | p@chr11:9588526..9588534, + |
| 9.99e-40 | FFCP PHASE1:Hg19::chr4:174440289..174440300,-#_73747c335c03d84874127e5b1b8c45ae | p@chr4:174440289..174440300, - |
| 9.99e-40 | FFCP PHASE2:Hg19::chr4:174440289..174440300,-#_73747c335c03d84874127e5b1b8c45ae | p@chr4:174440289..174440300, - |
| 1.57e-37 | FFCP PHASE2:Hg19::chr7:136759435..136759447,+#_cfa3807dbbf6e8affc2da1772240e1cb | p@chr7:136759435..136759447, + |
| 1.57e-37 | FFCP PHASE1:Hg19::chr7:136759435..136759447,+#_cfa3807dbbf6e8affc2da1772240e1cb | p@chr7:136759435..136759447, + |
| 9.84e-37 | FFCP PHASE1:Hg19::chr9:12701351..12701368,+#_da6e7abb7d901774a96f45423c8dd4f9 | p21@TYRP1 |
| 9.84e-37 | FFCP PHASE2:Hg19::chr9:12701351..12701368,+#_da6e7abb7d901774a96f45423c8dd4f9 | p21@TYRP1 |
| 1.18e-36 | FFCP PHASE1:Hg19::chr20:44410265..44410286,-#_e331bc97acf66990fce80dff9e0b1b63 | p@chr20:44410265..44410286, - |
| 1.18e-36 | FFCP PHASE2:Hg19::chr20:44410265..44410286,-#_e331bc97acf66990fce80dff9e0b1b63 | p@chr20:44410265..44410286, - |
| 2.45e-36 | FFCP PHASE1:Hg19::chr1:109935515..109935518,-#_300d40c71987365601eb897033da5c2a | p@chr1:109935515..109935518, - |
| 2.45e-36 | FFCP PHASE2:Hg19::chr1:109935515..109935518,-#_300d40c71987365601eb897033da5c2a | p@chr1:109935515..109935518, - |
| 1.11e-34 | FFCP PHASE1:Hg19::chr10:92173191..92173202,+#_3fade06a4e0431258d3e6f97260bdad0 | p@chr10:92173191..92173202, + |
| 1.11e-34 | FFCP PHASE2:Hg19::chr10:92173191..92173202,+#_3fade06a4e0431258d3e6f97260bdad0 | p@chr10:92173191..92173202, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr16:89686480..89686486,+#_d0c64474738bc9aad5686d81f8a8253d | p@chr16:89686480..89686486, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr13:37420608..37420609,-#_d0c64474738bc9aad5686d81f8a8253d | p@chr13:37420608..37420609, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chrX:47509466..47509475,-#_d0c64474738bc9aad5686d81f8a8253d | p@chrX:47509466..47509475, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr16:89686480..89686486,+#_d0c64474738bc9aad5686d81f8a8253d | p@chr16:89686480..89686486, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr4:174460524..174460526,+#_d0c64474738bc9aad5686d81f8a8253d | p2@NBLA00301 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr13:37420608..37420609,-#_d0c64474738bc9aad5686d81f8a8253d | p@chr13:37420608..37420609, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chrX:47509466..47509475,-#_d0c64474738bc9aad5686d81f8a8253d | p@chrX:47509466..47509475, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr4:174460524..174460526,+#_d0c64474738bc9aad5686d81f8a8253d | p2@NBLA00301 |
| 8.39e-34 | FFCP PHASE1:Hg19::chr2:38148042..38148060,+#_65960ae879f31a4f12b793de1a5b30db | p@chr2:38148042..38148060, + |
| 8.39e-34 | FFCP PHASE2:Hg19::chr2:38148042..38148060,+#_65960ae879f31a4f12b793de1a5b30db | p@chr2:38148042..38148060, + |
| 1.17e-33 | FFCP PHASE1:Hg19::chrX:107681458..107681465,-#_c587497bf547b89a2f3a1c71a6d9df67 | p7@COL4A6 |
| 1.17e-33 | FFCP PHASE2:Hg19::chrX:107681458..107681465,-#_c587497bf547b89a2f3a1c71a6d9df67 | p7@COL4A6 |
| 1.64e-33 | FFCP PHASE2:Hg19::chr12:105258734..105258750,+#_6421159fe7980c6fe069e1822311ee6e | p@chr12:105258734..105258750, + |
| 1.64e-33 | FFCP PHASE1:Hg19::chr12:105258734..105258750,+#_6421159fe7980c6fe069e1822311ee6e | p@chr12:105258734..105258750, + |
| 1.93e-33 | FFCP PHASE2:Hg19::chr9:12701203..12701216,+#_2b2a05c9f4c2b36cc654856f49ee5126 | p18@TYRP1 |
| 1.93e-33 | FFCP PHASE1:Hg19::chr9:12701203..12701216,+#_2b2a05c9f4c2b36cc654856f49ee5126 | p18@TYRP1 |
| 5.37e-32 | FFCP PHASE2:Hg19::chr2:188415649..188415664,-#_21927114c8b09ace8550c9257c6e68cc | p@chr2:188415649..188415664, - |
| 5.37e-32 | FFCP PHASE1:Hg19::chr2:188415649..188415664,-#_21927114c8b09ace8550c9257c6e68cc | p@chr2:188415649..188415664, - |
| 1.17e-31 | FFCP PHASE1:Hg19::chr2:102720962..102720971,+#_9abdc685ef4ca78f3350480966a18784 | p27@IL1R1 |
| 1.17e-31 | FFCP PHASE2:Hg19::chr2:102720962..102720971,+#_9abdc685ef4ca78f3350480966a18784 | p27@IL1R1 |
| 1.37e-31 | FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_0c1ec4a1dce447f1777be9708fad0b08 | p@chr13:94958134..94958164, + |
| 1.37e-31 | FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_0c1ec4a1dce447f1777be9708fad0b08 | p@chr13:94958134..94958164, + |
| 4.04e-31 | FFCP PHASE2:Hg19::chrX:119254455..119254468,+#_6c002c005f23a04f87b9411ae1e66ce0 | p1@ENST00000555831, p1@ENST00000557073 |
| 4.04e-31 | FFCP PHASE1:Hg19::chrX:47373179..47373190,-#_6c002c005f23a04f87b9411ae1e66ce0 | p2@NUS1P1 |
| 4.04e-31 | FFCP PHASE2:Hg19::chrX:47373179..47373190,-#_6c002c005f23a04f87b9411ae1e66ce0 | p2@NUS1P1 |
| 4.04e-31 | FFCP PHASE2:Hg19::chr16:89687026..89687041,+#_6c002c005f23a04f87b9411ae1e66ce0 | p7@DPEP1 |
| 4.04e-31 | FFCP PHASE1:Hg19::chrX:119254455..119254468,+#_6c002c005f23a04f87b9411ae1e66ce0 | p1@ENST00000555831, p1@ENST00000557073 |
| 4.04e-31 | FFCP PHASE1:Hg19::chr16:89687026..89687041,+#_6c002c005f23a04f87b9411ae1e66ce0 | p7@DPEP1 |
| 5.5e-31 | FFCP PHASE2:Hg19::chr14:52508902..52508921,-#_02a31fd852be38f2480eef73577a0f63 | p5@NID2 |
| 5.5e-31 | FFCP PHASE1:Hg19::chr14:52508902..52508921,-#_02a31fd852be38f2480eef73577a0f63 | p5@NID2 |
| 4.49e-30 | FFCP PHASE2:Hg19::chr17:6658878..6658889,+#_57467a9c812eb31f8e9680edc45caab3 | p9@XAF1 |
| 4.49e-30 | FFCP PHASE1:Hg19::chr17:6658878..6658889,+#_57467a9c812eb31f8e9680edc45caab3 | p9@XAF1 |
| 1.08e-29 | FFCP PHASE1:Hg19::chr5:121490583..121490596,-#_e06375713a29dc10442f4f4dd0bc3d20 | p1@ENST00000504829 |
| 1.08e-29 | FFCP PHASE2:Hg19::chr5:121490583..121490596,-#_e06375713a29dc10442f4f4dd0bc3d20 | p1@ENST00000504829 |
| 9.3e-29 | FFCP PHASE1:Hg19::chr2:121480592..121480601,+#_0c9d621eedc479456cdd0812b700ae06 | p@chr2:121480592..121480601, + |
| 9.3e-29 | FFCP PHASE2:Hg19::chr2:121480592..121480601,+#_0c9d621eedc479456cdd0812b700ae06 | p@chr2:121480592..121480601, + |
| 4.13e-28 | FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_8517081d94c95d1c4a50a1047520193b | p5@NR1H4 |
| 4.13e-28 | FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_8517081d94c95d1c4a50a1047520193b | p5@NR1H4 |
| 2.09e-27 | FFCP PHASE2:Hg19::chr10:102122643..102122654,+#_5f4f246096ed93d1a05bd97d622dee5c | p@chr10:102122643..102122654, + |
| 2.09e-27 | FFCP PHASE1:Hg19::chr10:102122643..102122654,+#_5f4f246096ed93d1a05bd97d622dee5c | p@chr10:102122643..102122654, + |
| 7.96e-27 | FFCP PHASE2:Hg19::chr12:10331605..10331616,+#_2a95d49c41b95fddff0ddae53a4212ec | p5@C12orf59 |
| 7.96e-27 | FFCP PHASE1:Hg19::chr12:10331605..10331616,+#_2a95d49c41b95fddff0ddae53a4212ec | p5@C12orf59 |
