DOID:3451: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=skin carcinoma | |name=skin carcinoma | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:50, 12 September 2014
| Name: | skin carcinoma | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A carcinoma that is located_in tissues of the skin." [url:http://www.cancer.gov/cancertopics/types/skin] | ||
| Xrefs: |
| ||
| Synonyms: |
"carcinoma OF SKIN" EXACT [MTH:683] "carcinoma of skin" RELATED [] "Non-melanoma skin cancer" EXACT [NCI2004_11_17:C4914] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:4159(skin cancer) |
|---|
Children
| is a: | DOID:2513 (basal cell carcinoma),DOID:3151 (skin squamous cell carcinoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10702-109G9 (basal cell carcinoma cell line:TE 354.T)
- 10713-109I2
- 10791-110H8 (keratoacanthoma cell line:HKA-1)
Mouse (Mus musculus)
- 10702-109G9 (basal cell carcinoma cell line:TE 354.T)
- 10713-109I2
- 10791-110H8 (keratoacanthoma cell line:HKA-1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3451 (skin carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:69686723..69686726,-#_b1568f1db64e43108f2aad4c019a4f88 | p@chr10:69686723..69686726, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:69686723..69686726,-#_b1568f1db64e43108f2aad4c019a4f88 | p@chr10:69686723..69686726, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:153431372..153431378,-#_eca1904d5ad88c84b634895f549bc16d | p4@S100A7 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:101448249..101448254,+#_eca1904d5ad88c84b634895f549bc16d | p@chr7:101448249..101448254, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:123875147..123875159,+#_eca1904d5ad88c84b634895f549bc16d | p26@ZHX2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:101448277..101448287,+#_eca1904d5ad88c84b634895f549bc16d | p@chr7:101448277..101448287, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:101448249..101448254,+#_eca1904d5ad88c84b634895f549bc16d | p@chr7:101448249..101448254, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:153431372..153431378,-#_eca1904d5ad88c84b634895f549bc16d | p4@S100A7 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:101448101..101448113,+#_eca1904d5ad88c84b634895f549bc16d | p@chr7:101448101..101448113, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr18:22080172..22080183,+#_eca1904d5ad88c84b634895f549bc16d | p@chr18:22080172..22080183, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:101448277..101448287,+#_eca1904d5ad88c84b634895f549bc16d | p@chr7:101448277..101448287, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:101448176..101448184,+#_eca1904d5ad88c84b634895f549bc16d | p@chr7:101448176..101448184, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr18:22080172..22080183,+#_eca1904d5ad88c84b634895f549bc16d | p@chr18:22080172..22080183, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:101448101..101448113,+#_eca1904d5ad88c84b634895f549bc16d | p@chr7:101448101..101448113, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:123875147..123875159,+#_eca1904d5ad88c84b634895f549bc16d | p26@ZHX2 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:101448176..101448184,+#_eca1904d5ad88c84b634895f549bc16d | p@chr7:101448176..101448184, + |
| 3.61e-34 | FFCP PHASE2:Hg19::chr20:49047228..49047236,-#_9db8e46b636973bfdb2141cb9bd49fb8 | p@chr20:49047228..49047236, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr9:97563078..97563086,+#_9db8e46b636973bfdb2141cb9bd49fb8 | p@chr9:97563078..97563086, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr20:49047228..49047236,-#_9db8e46b636973bfdb2141cb9bd49fb8 | p@chr20:49047228..49047236, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr9:97563078..97563086,+#_9db8e46b636973bfdb2141cb9bd49fb8 | p@chr9:97563078..97563086, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr1:76127067..76127073,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1 | p@chr1:76127067..76127073, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr17:19648916..19648937,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1 | p10@ALDH3A1 |
| 5.04e-34 | FFCP PHASE2:Hg19::chr3:81671636..81671662,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1 | p@chr3:81671636..81671662, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr21:37376927..37376938,+#_7dbd9415b12ee8dfb5f4330ccdcff8b1 | p@chr21:37376927..37376938, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr1:76127067..76127073,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1 | p@chr1:76127067..76127073, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr18:61254400..61254410,+#_7dbd9415b12ee8dfb5f4330ccdcff8b1 | p8@SERPINB13 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr21:37376927..37376938,+#_7dbd9415b12ee8dfb5f4330ccdcff8b1 | p@chr21:37376927..37376938, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr18:61254400..61254410,+#_7dbd9415b12ee8dfb5f4330ccdcff8b1 | p8@SERPINB13 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr3:81671636..81671662,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1 | p@chr3:81671636..81671662, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr17:19648916..19648937,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1 | p10@ALDH3A1 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr2:178179611..178179619,-#_430597ae1d857f5c33020b19fe2d214f | p4@ENST00000443132 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:10980427..10980431,-#_430597ae1d857f5c33020b19fe2d214f | p@chr1:10980427..10980431, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr3:193809263..193809278,+#_430597ae1d857f5c33020b19fe2d214f | p1@ENST00000457815 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr13:28542963..28542973,-#_430597ae1d857f5c33020b19fe2d214f | p1@CU677005 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr17:48072063..48072074,-#_430597ae1d857f5c33020b19fe2d214f | p5@DLX3 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:18085798..18085805,+#_430597ae1d857f5c33020b19fe2d214f | p@chr1:18085798..18085805, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr19:51517875..51517889,-#_430597ae1d857f5c33020b19fe2d214f | p3@AK026045 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr2:178179611..178179619,-#_430597ae1d857f5c33020b19fe2d214f | p4@ENST00000443132 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr17:48072063..48072074,-#_430597ae1d857f5c33020b19fe2d214f | p5@DLX3 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr3:177508111..177508119,-#_430597ae1d857f5c33020b19fe2d214f | p@chr3:177508111..177508119, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr3:193809263..193809278,+#_430597ae1d857f5c33020b19fe2d214f | p1@ENST00000457815 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr13:28542963..28542973,-#_430597ae1d857f5c33020b19fe2d214f | p1@CU677005 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:10980427..10980431,-#_430597ae1d857f5c33020b19fe2d214f | p@chr1:10980427..10980431, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:18085798..18085805,+#_430597ae1d857f5c33020b19fe2d214f | p@chr1:18085798..18085805, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr3:177508111..177508119,-#_430597ae1d857f5c33020b19fe2d214f | p@chr3:177508111..177508119, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr19:51517875..51517889,-#_430597ae1d857f5c33020b19fe2d214f | p3@AK026045 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:101454246..101454255,-#_430597ae1d857f5c33020b19fe2d214f | p11@TRPC6 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:101454246..101454255,-#_430597ae1d857f5c33020b19fe2d214f | p11@TRPC6 |
| 4.32e-26 | FFCP PHASE1:Hg19::chr16:55600644..55600645,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02 | p2@CAPNS2 |
| 4.32e-26 | FFCP PHASE1:Hg19::chr1:151826151..151826159,-#_9224e541f2ab3d70ccc9e9f3fbbe9e02 | p3@THEM5 |
| 4.32e-26 | FFCP PHASE2:Hg19::chr4:73248974..73249005,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02 | p@chr4:73248974..73249005, + |
| 4.32e-26 | FFCP PHASE1:Hg19::chr5:1884077..1884085,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02 | p1@ENST00000506335 |
| 4.32e-26 | FFCP PHASE2:Hg19::chr16:55600644..55600645,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02 | p2@CAPNS2 |
| 4.32e-26 | FFCP PHASE2:Hg19::chr1:151826151..151826159,-#_9224e541f2ab3d70ccc9e9f3fbbe9e02 | p3@THEM5 |
| 4.32e-26 | FFCP PHASE1:Hg19::chr4:73248974..73249005,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02 | p@chr4:73248974..73249005, + |
| 4.32e-26 | FFCP PHASE2:Hg19::chr5:1884077..1884085,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02 | p1@ENST00000506335 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr8:123875131..123875140,+#_53d797709debc43329f99f76df9b3f98 | p25@ZHX2 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr1:86921028..86921032,+#_53d797709debc43329f99f76df9b3f98 | p@chr1:86921028..86921032, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr7:101448204..101448229,+#_53d797709debc43329f99f76df9b3f98 | p@chr7:101448204..101448229, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr17:77774350..77774360,+#_53d797709debc43329f99f76df9b3f98 | p@chr17:77774350..77774360, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr17:77774350..77774360,+#_53d797709debc43329f99f76df9b3f98 | p@chr17:77774350..77774360, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr3:50367252..50367278,-#_53d797709debc43329f99f76df9b3f98 | p@chr3:50367252..50367278, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr8:120233966..120233975,+#_53d797709debc43329f99f76df9b3f98 | p@chr8:120233966..120233975, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_53d797709debc43329f99f76df9b3f98 | p@chr16:66906996..66906997, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr8:123875131..123875140,+#_53d797709debc43329f99f76df9b3f98 | p25@ZHX2 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr6:152792772..152792787,-#_53d797709debc43329f99f76df9b3f98 | p@chr6:152792772..152792787, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr12:130647145..130647153,+#_53d797709debc43329f99f76df9b3f98 | p3@FZD10 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr12:130647145..130647153,+#_53d797709debc43329f99f76df9b3f98 | p3@FZD10 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr1:86921028..86921032,+#_53d797709debc43329f99f76df9b3f98 | p@chr1:86921028..86921032, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_53d797709debc43329f99f76df9b3f98 | p@chr16:66906996..66906997, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr7:101448204..101448229,+#_53d797709debc43329f99f76df9b3f98 | p@chr7:101448204..101448229, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr6:152792772..152792787,-#_53d797709debc43329f99f76df9b3f98 | p@chr6:152792772..152792787, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr3:50367252..50367278,-#_53d797709debc43329f99f76df9b3f98 | p@chr3:50367252..50367278, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr8:120233966..120233975,+#_53d797709debc43329f99f76df9b3f98 | p@chr8:120233966..120233975, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:234526341..234526346,+#_380566dac2a8cdec14a58644f5573cd7 | p1@UGT1A8 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:234526341..234526346,+#_380566dac2a8cdec14a58644f5573cd7 | p1@UGT1A8 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:127591699..127591713,-#_80ed41ced0479862d73a43e5872c631f | p@chr10:127591699..127591713, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:127591699..127591713,-#_80ed41ced0479862d73a43e5872c631f | p@chr10:127591699..127591713, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:92754303..92754313,+#_80ed41ced0479862d73a43e5872c631f | p2@ENST00000412362 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:92754303..92754313,+#_80ed41ced0479862d73a43e5872c631f | p2@ENST00000412362 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr3:136885144..136885147,+#_80ed41ced0479862d73a43e5872c631f | p@chr3:136885144..136885147, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr4:152117165..152117168,+#_80ed41ced0479862d73a43e5872c631f | p@chr4:152117165..152117168, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr1:153430422..153430443,-#_80ed41ced0479862d73a43e5872c631f | p3@S100A7 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:118570948..118570964,-#_80ed41ced0479862d73a43e5872c631f | p@chr1:118570948..118570964, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr5:14437967..14437970,+#_80ed41ced0479862d73a43e5872c631f | p@chr5:14437967..14437970, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr14:65406349..65406358,+#_80ed41ced0479862d73a43e5872c631f | p@chr14:65406349..65406358, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr3:136885144..136885147,+#_80ed41ced0479862d73a43e5872c631f | p@chr3:136885144..136885147, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr1:118570948..118570964,-#_80ed41ced0479862d73a43e5872c631f | p@chr1:118570948..118570964, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:153430422..153430443,-#_80ed41ced0479862d73a43e5872c631f | p3@S100A7 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:152117165..152117168,+#_80ed41ced0479862d73a43e5872c631f | p@chr4:152117165..152117168, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:54259346..54259353,+#_80ed41ced0479862d73a43e5872c631f | p@chr10:54259346..54259353, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr5:14437967..14437970,+#_80ed41ced0479862d73a43e5872c631f | p@chr5:14437967..14437970, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:54259346..54259353,+#_80ed41ced0479862d73a43e5872c631f | p@chr10:54259346..54259353, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr14:65406349..65406358,+#_80ed41ced0479862d73a43e5872c631f | p@chr14:65406349..65406358, + |
| 3.11e-21 | FFCP PHASE1:Hg19::chr17:39674844..39674854,+#_3b4ed01e40d2a28d46b0b0596acfaffc | p@chr17:39674844..39674854, + |
| 3.11e-21 | FFCP PHASE1:Hg19::chr4:75180763..75180777,+#_3b4ed01e40d2a28d46b0b0596acfaffc | p@chr4:75180763..75180777, + |
| 3.11e-21 | FFCP PHASE2:Hg19::chr1:152572708..152572714,+#_3b4ed01e40d2a28d46b0b0596acfaffc | p1@LCE3C |
| 3.11e-21 | FFCP PHASE2:Hg19::chr5:11385573..11385583,-#_3b4ed01e40d2a28d46b0b0596acfaffc | p47@CTNND2 |
| 3.11e-21 | FFCP PHASE1:Hg19::chr6:132455433..132455444,+#_3b4ed01e40d2a28d46b0b0596acfaffc | p4@ENST00000443303 |
| 3.11e-21 | FFCP PHASE1:Hg19::chr1:152572708..152572714,+#_3b4ed01e40d2a28d46b0b0596acfaffc | p1@LCE3C |
