UBERON:0001009: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|located_in= | |located_in= | ||
|name=circulatory system | |name=circulatory system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:14, 12 September 2014
| Name: | circulatory system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." [Wikipedia:Circulatory_system] | ||
| Xrefs: |
| ||
| Synonyms: | "systema cardiovasculare" RELATED LATIN [Wikipedia:Circulatory_system] | ||
| Comments: | the cardiovascular system and the lymphatic system are parts of the circulatory system | ||
| Alt_id: | UBERON:FBbt_00005057-FMA_7161-MA_0000010-MIAA_0000016-XAO_0000100-ZFA_0000010 | ||
| Subset: | uberon_slim |
200px-Circulatory_System_en.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|---|
| disjoint_from: | UBERON:0001016(nervous system),UBERON:0001033(gustatory system),UBERON:0001434(skeletal system),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system) |
Children
| disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system) |
|---|---|
| part of: | UBERON:0004535 (cardiovascular system),UBERON:0005629 (vascular plexus),UBERON:0006558 (lymphatic part of lymphoid system),UBERON:0007100 (primary circulatory organ),UBERON:0015228 (circulatory organ) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10016-101C7 (heart, adult, pool1)
- 10046-101G1 (heart, fetal, pool1)
- 10050-101G5 (heart, adult, diseased post-infarction, donor1)
- 10051-101G6 (heart, adult, diseased, donor1)
- 10052-101G7 (aorta, adult, pool1)
- 10053-101G8 (blood, adult, pool1)
- 10078-102A6 (left ventricle, adult, donor1)
- 10079-102A7 (left atrium, adult, donor1)
- 10087-102B6
- 10190-103E1 (artery, adult)
... further results Mouse (Mus musculus)
- 10016-101C7 (heart, adult, pool1)
- 10046-101G1 (heart, fetal, pool1)
- 10050-101G5 (heart, adult, diseased post-infarction, donor1)
- 10051-101G6 (heart, adult, diseased, donor1)
- 10052-101G7 (aorta, adult, pool1)
- 10053-101G8 (blood, adult, pool1)
- 10078-102A6 (left ventricle, adult, donor1)
- 10079-102A7 (left atrium, adult, donor1)
- 10087-102B6
- 10190-103E1 (artery, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001009 (circulatory system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.15e-79 | FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_1f2e982a9470520996d6a1498285353c | p2@SOX17 |
| 2.15e-79 | FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_1f2e982a9470520996d6a1498285353c | p2@SOX17 |
| 1.14e-68 | FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_b6cc68cbd991d951ad3f05fdb3bca0fc | p@chr12:96830430..96830450, + |
| 1.14e-68 | FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_b6cc68cbd991d951ad3f05fdb3bca0fc | p@chr12:96830430..96830450, + |
| 2.86e-68 | FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_8cf0f7c75b0330e3ac62c7c432770993 | p@chr11:128562673..128562716, - |
| 2.86e-68 | FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_8cf0f7c75b0330e3ac62c7c432770993 | p@chr11:128562673..128562716, - |
| 2.4e-67 | FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_5223373ec67af749439b4e1d7afda73f | p@chr19:36187511..36187515, - |
| 2.4e-67 | FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_5223373ec67af749439b4e1d7afda73f | p@chr19:36187511..36187515, - |
| 1.46e-63 | FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_f9d58b33565351ac71d94597d329b342 | p@chr4:147375434..147375447, + |
| 1.46e-63 | FFCP PHASE2:Mm9::chr4:151692832..151692868,+#_f9d58b33565351ac71d94597d329b342 | p@chr4:151692832..151692868, + |
| 1.46e-63 | FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_f9d58b33565351ac71d94597d329b342 | p@chr1:137747392..137747402, - |
| 1.46e-63 | FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_f9d58b33565351ac71d94597d329b342 | p@chr1:137747392..137747402, - |
| 1.46e-63 | FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_f9d58b33565351ac71d94597d329b342 | p@chr9:24549775..24549776, - |
| 1.46e-63 | FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_f9d58b33565351ac71d94597d329b342 | p@chr4:147375434..147375447, + |
| 1.46e-63 | FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_f9d58b33565351ac71d94597d329b342 | p@chr9:24549775..24549776, - |
| 1.46e-63 | FFCP PHASE1:Mm9::chr4:151692832..151692868,+#_f9d58b33565351ac71d94597d329b342 | p@chr4:151692832..151692868, + |
| 7.0e-61 | FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_bac8b2261e3612d9b2e642e51dd5d34d | p@chr4:140980456..140980463, + |
| 7.0e-61 | FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_bac8b2261e3612d9b2e642e51dd5d34d | p@chr4:140980456..140980463, + |
| 3.45e-60 | FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_9d2c7c5b27347791705cb6f55e7b2245 | p@chr1:137737483..137737497, - |
| 3.45e-60 | FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_9d2c7c5b27347791705cb6f55e7b2245 | p@chr12:113728951..113728965, + |
| 3.45e-60 | FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_9d2c7c5b27347791705cb6f55e7b2245 | p@chr12:113728951..113728965, + |
| 3.45e-60 | FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_9d2c7c5b27347791705cb6f55e7b2245 | p@chr1:137737483..137737497, - |
| 3.77e-60 | FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_d990bba589cfbf1db6d0d738da36034f | p@chr4:147375200..147375220, + |
| 3.77e-60 | FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_d990bba589cfbf1db6d0d738da36034f | p@chr4:147375200..147375220, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr11:58815923..58815951, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55571909..55571953, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_37b6ad2df8ef0c0813954796c25cf734 | p2@Mov10l1 |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55571909..55571953, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55584197..55584239, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137743272..137743307, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55584663..55584731, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55586837..55586880, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137747953..137747967, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55584272..55584298, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137743272..137743307, + |
| 8.52e-60 | FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_37b6ad2df8ef0c0813954796c25cf734 | p2@Mov10l1 |
| 8.52e-60 | FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr4:147375901..147375913, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55563577..55563611, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55565785..55565833, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55568937..55568988, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55579265..55579297, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137747382..137747385, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55572120..55572173, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137744668..137744681, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55579265..55579297, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137744668..137744681, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137744550..137744565, + |
| 8.52e-60 | FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr19:36193772..36193793, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55568790..55568803, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137747289..137747313, + |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55586837..55586880, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55568937..55568988, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55568790..55568803, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137744611..137744621, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr19:36193772..36193793, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr4:147375901..147375913, + |
| 8.52e-60 | FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137747382..137747385, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chrX:56432790..56432814,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chrX:56432790..56432814, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55572120..55572173, + |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55568737..55568746, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr5:120286706..120286736, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137747953..137747967, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137744550..137744565, + |
| 8.52e-60 | FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137744333..137744352, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55563577..55563611, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55584272..55584298, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137745434..137745445, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr11:65461897..65461929, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55581579..55581620, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chrX:56432790..56432814,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chrX:56432790..56432814, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55581579..55581620, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137744611..137744621, + |
| 8.52e-60 | FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr5:120286706..120286736, + |
| 8.52e-60 | FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr11:58815923..58815951, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55584663..55584731, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137747289..137747313, + |
| 8.52e-60 | FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137744636..137744654, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55584197..55584239, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137744636..137744654, + |
| 8.52e-60 | FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137745434..137745445, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55568737..55568746, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr11:65461897..65461929, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr14:55565785..55565833, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_37b6ad2df8ef0c0813954796c25cf734 | p@chr1:137744333..137744352, - |
| 5.45e-59 | FFCP PHASE1:Hg19::chr15:39542867..39542890,+#_d356dacec4198d7a7bf7ccb7927ced65 | p1@C15orf54 |
| 5.45e-59 | FFCP PHASE2:Hg19::chr15:39542867..39542890,+#_d356dacec4198d7a7bf7ccb7927ced65 | p1@C15orf54 |
| 1.51e-58 | FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_a4c2e91ed9c81b6bf052828487d75ead | p@chr3:30334038..30334060, + |
| 1.51e-58 | FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_a4c2e91ed9c81b6bf052828487d75ead | p@chr3:30334038..30334060, + |
| 3.61e-57 | FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_c83ead80be6f121c110fdb9773e7f4d5 | p@chr1:137742152..137742184, - |
| 3.61e-57 | FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_c83ead80be6f121c110fdb9773e7f4d5 | p@chr1:137742152..137742184, - |
| 2.05e-56 | FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_b5367a68ea5a0471ce7b1863753872c7 | p@chr16:5431481..5431510, + |
| 2.05e-56 | FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_b5367a68ea5a0471ce7b1863753872c7 | p@chr14:55577329..55577367, - |
| 2.05e-56 | FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_b5367a68ea5a0471ce7b1863753872c7 | p2@Tnni3 |
| 2.05e-56 | FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_b5367a68ea5a0471ce7b1863753872c7 | p@chr1:137742470..137742481, + |
| 2.05e-56 | FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_b5367a68ea5a0471ce7b1863753872c7 | p@chr1:137742470..137742481, + |
| 2.05e-56 | FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_b5367a68ea5a0471ce7b1863753872c7 | p@chr14:55577329..55577367, - |
| 2.05e-56 | FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_b5367a68ea5a0471ce7b1863753872c7 | p@chr16:5431481..5431510, + |
| 2.05e-56 | FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_b5367a68ea5a0471ce7b1863753872c7 | p2@Tnni3 |
| 2.23e-56 | FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_0599ae3b961d3ab66f94961baea7ce2d | p11@Arhgap31 |
| 2.23e-56 | FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_0599ae3b961d3ab66f94961baea7ce2d | p5@Nebl |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system of ion binding, a pumping mechanism, and an efficient vascular system; consisting of the blood, heart, and blood and lymph vessels, respectively.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
