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|located_in=
|located_in=
|name=smooth muscle tissue
|name=smooth muscle tissue
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 17:16, 12 September 2014

Name:smooth muscle tissue
Namespace:FANTOM
Definition:"Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]. Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae." [Wikipedia:Smooth_muscle_tissue]
Xrefs:
links:

AAO:0010244
AEO:0000141
BTO:0001260
EFO:0000889
EHDAA2:0003141
EMAPA:18923
EV:0100378
FBbt:00003525
FMA:14070
GAID:167
galen:SmoothMuscle
galen:SmoothMuscleTissue
[1]
MA:0000166
MAT:0000303
MESH:A.02.633.570
MIAA:0000303
ncithesaurus:Smooth_Muscle_Tissue
OpenCyc:Mx4rvvSS3pwpEbGdrcN5Y29ycA
TAO:0005274
VHOG:0001246
WBbt:0005781
XAO:0000175

ZFA:0005274
Synonyms: "involuntary muscle" EXACT []
"non-striated muscle" EXACT []
"smooth muscle" EXACT []
"textus muscularis levis; textus muscularis nonstriatus" RELATED LATIN [Wikipedia:Smooth_muscle_tissue]
"textus muscularis nonstriatus" EXACT [FMA:14070, FMA:TA]
"visceral muscle" NARROW SENSU []
"visceral muscle tissue" NARROW SENSU []
Comments:terminological note: GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells.
Alt_id: UBERON:FMA_14070-MA_0002440
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002385(muscle tissue)
disjoint_from:UBERON:0002036(striated muscle tissue)



Children

is a:UBERON:0004225 (respiratory system smooth muscle),UBERON:0004237 (blood vessel smooth muscle),UBERON:0004695 (arterial system smooth muscle)
derives from:FF:0010048 (human smooth muscle - adult sample)
part of:FF:0000181 (human smooth muscle of colon sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001135 (smooth muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_6d9c49034d14824073ca32b49dffa6c2p@chr8:69228447..69228492, +
1.58e-86FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_6d9c49034d14824073ca32b49dffa6c2p@chr2:178190171..178190178, +
1.58e-86FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_6d9c49034d14824073ca32b49dffa6c2p5@Adamts2
1.58e-86FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_6d9c49034d14824073ca32b49dffa6c2p@chr8:69228447..69228492, +
1.58e-86FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_6d9c49034d14824073ca32b49dffa6c2p5@Adamts2
1.58e-86FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_6d9c49034d14824073ca32b49dffa6c2p@chr2:112043522..112043530, -
1.58e-86FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_6d9c49034d14824073ca32b49dffa6c2p@chr17:14827154..14827169, -
1.58e-86FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_6d9c49034d14824073ca32b49dffa6c2p@chr17:14802633..14802637, -
1.58e-86FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_6d9c49034d14824073ca32b49dffa6c2p@chr17:14827154..14827169, -
1.58e-86FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_6d9c49034d14824073ca32b49dffa6c2p@chr17:14802633..14802637, -
1.58e-86FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_6d9c49034d14824073ca32b49dffa6c2p@chr17:87574327..87574332, +
1.58e-86FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_6d9c49034d14824073ca32b49dffa6c2p@chr17:87574327..87574332, +
1.58e-86FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_6d9c49034d14824073ca32b49dffa6c2p@chrX:160839744..160839754, +
1.58e-86FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_6d9c49034d14824073ca32b49dffa6c2p@chr2:112043522..112043530, -
1.58e-86FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_6d9c49034d14824073ca32b49dffa6c2p@chrX:160839744..160839754, +
1.58e-86FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_6d9c49034d14824073ca32b49dffa6c2p@chr2:178190171..178190178, +
1.33e-65FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_de67448da74770cac54c6a6da4a1d355p5@Myl12b
1.33e-65FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_de67448da74770cac54c6a6da4a1d355p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_de67448da74770cac54c6a6da4a1d355p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_de67448da74770cac54c6a6da4a1d355p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_de67448da74770cac54c6a6da4a1d355p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_de67448da74770cac54c6a6da4a1d355p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_de67448da74770cac54c6a6da4a1d355p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_de67448da74770cac54c6a6da4a1d355p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_de67448da74770cac54c6a6da4a1d355p5@Myl12b
1.33e-65FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_de67448da74770cac54c6a6da4a1d355p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_de67448da74770cac54c6a6da4a1d355p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_de67448da74770cac54c6a6da4a1d355p6@Npy1r
2.21e-65FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_2aadea9adb6b6a21b99257696ebb8a42p1@ENSMUST00000150529
2.21e-65FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_2aadea9adb6b6a21b99257696ebb8a42p1@ENSMUST00000150529
3.28e-58FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr17:14817013..14817022, -
3.28e-58FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr14:24251697..24251707, +
3.28e-58FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr17:14817013..14817022, -
3.28e-58FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr14:24251697..24251707, +
3.28e-58FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr10:96946110..96946113, +
3.28e-58FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_5ee616a84f3c69bdb1f66d3853a1aafcp8@Vit
3.28e-58FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr10:96946110..96946113, +
3.28e-58FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_5ee616a84f3c69bdb1f66d3853a1aafcp12@Gpr39
3.28e-58FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_5ee616a84f3c69bdb1f66d3853a1aafcp12@Gpr39
3.28e-58FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_5ee616a84f3c69bdb1f66d3853a1aafcp@chrX:160839012..160839023, +
3.28e-58FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_5ee616a84f3c69bdb1f66d3853a1aafcp@chrX:160839012..160839023, +
3.28e-58FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_5ee616a84f3c69bdb1f66d3853a1aafcp8@Vit
3.28e-58FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_5ee616a84f3c69bdb1f66d3853a1aafcp@chrX:160811352..160811356, -
3.28e-58FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_5ee616a84f3c69bdb1f66d3853a1aafcp@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_5ee616a84f3c69bdb1f66d3853a1aafcp@chrX:160811352..160811356, -
4.6e-53FFCP PHASE2:Hg19::chr1:110429102..110429103,+#_6894b3c6b57a173d9baae120bdabba7ap@chr1:110429102..110429103, +
4.6e-53FFCP PHASE1:Hg19::chr1:110429102..110429103,+#_6894b3c6b57a173d9baae120bdabba7ap@chr1:110429102..110429103, +
4.9e-53FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_ca01e09267c5b9f5f9bc4693200b433bp@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_ca01e09267c5b9f5f9bc4693200b433bp@chr10:67821185..67821217, -
4.9e-53FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_ca01e09267c5b9f5f9bc4693200b433bp@chr10:67821185..67821217, -
4.9e-53FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_ca01e09267c5b9f5f9bc4693200b433bp@chr7:91081998..91082010, -
4.9e-53FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_ca01e09267c5b9f5f9bc4693200b433bp@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_ca01e09267c5b9f5f9bc4693200b433bp@chr17:29227828..29227839, -
4.9e-53FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_ca01e09267c5b9f5f9bc4693200b433bp@chr14:24251717..24251731, +
4.9e-53FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_ca01e09267c5b9f5f9bc4693200b433bp@chr10:67598037..67598049, -
4.9e-53FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_ca01e09267c5b9f5f9bc4693200b433bp@chr14:24251717..24251731, +
4.9e-53FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_ca01e09267c5b9f5f9bc4693200b433bp5@Npy1r
4.9e-53FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_ca01e09267c5b9f5f9bc4693200b433bp@chr17:29227828..29227839, -
4.9e-53FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_ca01e09267c5b9f5f9bc4693200b433bp@chr10:67598037..67598049, -
4.9e-53FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_ca01e09267c5b9f5f9bc4693200b433bp5@Npy1r
4.9e-53FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_ca01e09267c5b9f5f9bc4693200b433bp@chr7:91081998..91082010, -
4.9e-53FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_ca01e09267c5b9f5f9bc4693200b433bp4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_ca01e09267c5b9f5f9bc4693200b433bp4@Il6st
7.35e-53FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_35d25449c227a6305bc63b1e218c34a3p11@Svep1
7.35e-53FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_35d25449c227a6305bc63b1e218c34a3p11@Svep1
1.1e-52FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_7387b01ad5c544b4d55fd497d92c4e28p@chrX:160838787..160838800, +
1.1e-52FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_7387b01ad5c544b4d55fd497d92c4e28p@chrX:160838787..160838800, +
1.65e-52FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_c65715de265d92e6627c9e8f0e56b31bp5@Phlda3
1.65e-52FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_c65715de265d92e6627c9e8f0e56b31bp5@Phlda3
5.51e-52FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_d07d5583d54a9e7b69d9be8109c1b932p@chr2:65009852..65009866, -
5.51e-52FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_d07d5583d54a9e7b69d9be8109c1b932p@chr2:65009852..65009866, -
1.18e-44FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_9e09c3c5dde49e4fea855d102b9c0f04p@chrX:160838683..160838694, +
1.18e-44FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_9e09c3c5dde49e4fea855d102b9c0f04p@chr11:86417559..86417568, +
1.18e-44FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_9e09c3c5dde49e4fea855d102b9c0f04p10@Gpr39
1.18e-44FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_9e09c3c5dde49e4fea855d102b9c0f04p10@Gpr39
1.18e-44FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_9e09c3c5dde49e4fea855d102b9c0f04p@chr13:119579287..119579292, +
1.18e-44FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_9e09c3c5dde49e4fea855d102b9c0f04p@chr11:86417559..86417568, +
1.18e-44FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_9e09c3c5dde49e4fea855d102b9c0f04p@chr17:14813242..14813246, -
1.18e-44FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_9e09c3c5dde49e4fea855d102b9c0f04p@chr2:178190136..178190151, +
1.18e-44FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_9e09c3c5dde49e4fea855d102b9c0f04p@chr17:14813242..14813246, -
1.18e-44FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_9e09c3c5dde49e4fea855d102b9c0f04p@chr13:119579287..119579292, +
1.18e-44FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_9e09c3c5dde49e4fea855d102b9c0f04p@chr2:178190136..178190151, +
1.18e-44FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_9e09c3c5dde49e4fea855d102b9c0f04p@chrX:160838683..160838694, +
1.66e-44FFCP PHASE1:Mm9::chr13:119503185..119503195,+#_467ce85b3818ed17db186aefa99cdd3ap9@Fgf10
1.66e-44FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_467ce85b3818ed17db186aefa99cdd3ap@chrX:160839663..160839673, +
1.66e-44FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_467ce85b3818ed17db186aefa99cdd3ap@chrX:160839663..160839673, +
1.66e-44FFCP PHASE2:Mm9::chr13:119503185..119503195,+#_467ce85b3818ed17db186aefa99cdd3ap9@Fgf10
2.33e-44FFCP PHASE2:Mm9::chr17:75790300..75790304,+#_602376edba57862e6f8b280b814dab53p@chr17:75790300..75790304, +
2.33e-44FFCP PHASE1:Mm9::chr17:75790300..75790304,+#_602376edba57862e6f8b280b814dab53p@chr17:75790300..75790304, +
3.27e-44FFCP PHASE1:Mm9::chr1:127573708..127573719,+#_c83e9ceb5b29aa718664775fb18b8c9fp9@Gpr39
3.27e-44FFCP PHASE2:Mm9::chr1:127573708..127573719,+#_c83e9ceb5b29aa718664775fb18b8c9fp9@Gpr39
4.58e-44FFCP PHASE2:Mm9::chr17:14813991..14813999,+#_6710daa5d509c5c1f4dab3e843cdabdbp@chr17:14813991..14813999, +
4.58e-44FFCP PHASE1:Mm9::chr17:14813991..14813999,+#_6710daa5d509c5c1f4dab3e843cdabdbp@chr17:14813991..14813999, +
8.97e-44FFCP PHASE2:Mm9::chr7:91120932..91120938,-#_dc992c973340d8a5b8552ee75dffafb6p@chr7:91120932..91120938, -
8.97e-44FFCP PHASE1:Mm9::chr7:91120932..91120938,-#_dc992c973340d8a5b8552ee75dffafb6p@chr7:91120932..91120938, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "A non-striated muscle that is composed of spindle-shaped cells. Smooth muscle usually is organized into sheets that line cavitated organs.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Involuntary muscle tissue consisting of uninucleate spindle-shaped fibers.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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