UBERON:0001280: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=liver parenchyma | |name=liver parenchyma | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002107 | |part_of=UBERON:0002107 | ||
Latest revision as of 17:17, 12 September 2014
| Name: | liver parenchyma | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the functional units of the liver including the lobules." [MP:0008986] | ||
| Xrefs: |
| ||
| Synonyms: |
"hepatic parenchyma" EXACT [FMA:17540] "hepatic parenchyme" RELATED [VHOG:0000539] "liver parenchyme" EXACT [XAO:0000454] "parenchyma of liver" EXACT [FMA:17540] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: |
UBERON:0003223 UBERON:FMA_17540-MA_0000366 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000353(parenchyma),UBERON:0004119(endoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0005171(hepatic duct),UBERON:0008835(hepatic diverticulum) |
| part_of: | UBERON:0002107(liver) |
Children
| part of: | UBERON:0001171 (portal lobule),UBERON:0004647 (liver lobule) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
- 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
- 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
- 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
- 11831-124G4
- 11832-124G5
- 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
... further results Mouse (Mus musculus)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
- 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
- 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
- 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
- 11831-124G4
- 11832-124G5
- 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001280 (liver parenchyma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.74e-88 | FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_574b56c06426d590943c5cb24575133d | p2@ENST00000448698 |
| 9.74e-88 | FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_574b56c06426d590943c5cb24575133d | p2@ENST00000448698 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr8:87745380..87745385, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:52781901..52781904,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr7:52781901..52781904, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr5:114422970..114422985, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr2:11935531..11935538, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:85801525..85801529,-#_103e79e5a3c1e504c4a5bd9b992197fa | p6@Adamts1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr7:87919399..87919406, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:114123814..114123821,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr8:114123814..114123821, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr9:62199266..62199267, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr10:85586219..85586227, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_103e79e5a3c1e504c4a5bd9b992197fa | p4@Pag1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr15:90508949..90508955, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:137570295..137570315,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr1:137570295..137570315, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr18:5125608..5125613, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr10:93819538..93819549, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:35106363..35106372, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr13:96429602..96429605, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr11:109223756..109223764, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:35106363..35106372, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr7:118133901..118133904, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr8:25530071..25530072, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr10:60279719..60279737, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr6:48398664..48398684, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr15:88669906..88669914, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr1:163794592..163794593, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:34798555..34798562, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr12:86691503..86691504, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr18:39297570..39297573, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr5:76329688..76329692, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr7:117101788..117101793, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:67870501..67870507, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr12:81955014..81955018, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:116223548..116223551,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr9:116223548..116223551, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr11:119254092..119254100, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr10:85586219..85586227, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr6:129180613..129180616, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr18:65159026..65159034, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr11:68437375..68437378, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:34798597..34798606, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr5:75375903..75375931, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr7:118133901..118133904, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr10:93499468..93499494, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr6:15678147..15678149, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr16:91441786..91441787, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr11:117737077..117737096, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr7:109031260..109031268, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr13:113053257..113053258, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr7:109031260..109031268, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:35945332..35945335, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr18:60398371..60398393, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr10:8586393..8586401, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:35945332..35945335, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr8:3311867..3311873, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr8:127816016..127816021, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:67870501..67870507, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr9:42915185..42915192, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr9:42915185..42915192, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr6:91441074..91441080, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:35094068..35094092, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:137570295..137570315,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr1:137570295..137570315, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:33088768..33088773,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr5:33088768..33088773, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr6:129180613..129180616, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:35094068..35094092, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr12:85288471..85288502, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr14:101778294..101778296, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr5:32912678..32912687, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:85547242..85547252,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr16:85547242..85547252, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr8:25530071..25530072, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr4:100890388..100890423, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr5:76329688..76329692, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr13:113554186..113554192, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr13:113550715..113550722, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr4:141645056..141645068, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr11:117829935..117829959, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr12:87046930..87046933, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:93942324..93942342,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr10:93942324..93942342, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr1:132405466..132405470, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr14:101778294..101778296, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr12:87046930..87046933, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr11:119254092..119254100, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:100890388..100890423,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr4:100890388..100890423, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr1:163794592..163794593, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr18:65159026..65159034, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr7:117101788..117101793, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:138241693..138241697,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr1:138241693..138241697, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr2:169549462..169549477, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr4:62009160..62009164, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:21389022..21389032,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr10:21389022..21389032, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr8:114250006..114250039, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr4:57687477..57687488, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr10:85587155..85587188, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr15:97402708..97402712, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr1:138241693..138241697, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr10:93895817..93895819, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr2:133323630..133323631, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:35106749..35106752, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr1:186559285..186559288, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr11:109223779..109223789, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35106749..35106752,-#_103e79e5a3c1e504c4a5bd9b992197fa | p@chr17:35106749..35106752, - |
