UBERON:0002757: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=regional part of epithalamus | |name=regional part of epithalamus | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001899 | |part_of=UBERON:0001899 | ||
Latest revision as of 17:34, 12 September 2014
| Name: | regional part of epithalamus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"anatomical structure of brain of epithalamus" EXACT [OBOL:automatic] "biological structure of brain of epithalamus" EXACT [OBOL:automatic] "brain anatomical structure of epithalamus" EXACT [OBOL:automatic] "brain biological structure of epithalamus" EXACT [OBOL:automatic] "epithalamus anatomical structure of brain" EXACT [OBOL:automatic] "epithalamus biological structure of brain" EXACT [OBOL:automatic] "epithalamus brain anatomical structure" EXACT [OBOL:automatic] "epithalamus brain biological structure" EXACT [OBOL:automatic] "epithalamus neuraxis segment" EXACT [OBOL:automatic] "epithalamus regional part of brain" EXACT [OBOL:automatic] "epithalamus segment" EXACT [FMA:62013] "epithalamus segment of brain" EXACT [OBOL:automatic] "neuraxis segment of epithalamus" EXACT [OBOL:automatic] "regional part of brain of epithalamus" EXACT [OBOL:automatic] "segment of brain of epithalamus" EXACT [OBOL:automatic] "segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607] | ||
| Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002784(regional part of diencephalon) |
|---|---|
| part_of: | UBERON:0001899(epithalamus) |
Children
| is a: | UBERON:0001905 (pineal body) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002757 (regional part of epithalamus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE2:Hg19::chr9:137539895..137539904,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:137539895..137539904, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:56582028..56582062,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:56582028..56582062, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:107545606..107545631, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135473063..135473075,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135473063..135473075, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:129084265..129084288, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_9fff67266e304a13f2133c4d8e21ddbe | p4@CHRNB2 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:6954834..6954841,+#_9fff67266e304a13f2133c4d8e21ddbe | p9@GNB3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135473876..135473885, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135504353..135504365,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135504353..135504365, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:18066399..18066411, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135521466..135521470,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135521466..135521470, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18041199..18041200,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18041199..18041200, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:9782665..9782674, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:21399081..21399087,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:21399081..21399087, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_9fff67266e304a13f2133c4d8e21ddbe | p11@SRRM3 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:81859007..81859036,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:81859007..81859036, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:55422293..55422300,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:55422293..55422300, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:204667243..204667248,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:204667243..204667248, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:18066319..18066337,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:18066319..18066337, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:17930871..17930877,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:17930871..17930877, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18067951..18067954, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:57907030..57907050,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:57907030..57907050, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:87755821..87755822,-#_9fff67266e304a13f2133c4d8e21ddbe | p10@CNGB3 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:99860786..99860791, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135504337..135504342,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135504337..135504342, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:17085717..17085733,-#_9fff67266e304a13f2133c4d8e21ddbe | p2@PLCL2-AS1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:192894646..192894653,-#_9fff67266e304a13f2133c4d8e21ddbe | p2@ENST00000414895 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr6:33087873..33087886,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr6:33087873..33087886, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_9fff67266e304a13f2133c4d8e21ddbe | p9@PRR16 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135473748..135473753,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135473748..135473753, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:1210506..1210513,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:1210506..1210513, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:99734965..99734976, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_9fff67266e304a13f2133c4d8e21ddbe | p3@NEUROG1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17185958..17185998,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17185958..17185998, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:87751931..87751947,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:87751931..87751947, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:120969099..120969104,+#_9fff67266e304a13f2133c4d8e21ddbe | p3@WNT16 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr13:56628548..56628553,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:56628548..56628553, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:52650541..52650548,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:52650541..52650548, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:100942645..100942655, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr17:74463608..74463612,+#_9fff67266e304a13f2133c4d8e21ddbe | p5@AANAT |
| 3.29e-195 | FFCP PHASE2:Hg19::chr9:92310419..92310432,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:92310419..92310432, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr4:1188439..1188454,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr4:1188439..1188454, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:49621658..49621666,+#_9fff67266e304a13f2133c4d8e21ddbe | p21@TUBA1C |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18063707..18063720,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18063707..18063720, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:45782001..45782009,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:45782001..45782009, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18041194..18041197,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18041194..18041197, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chrX:33146637..33146644,-#_9fff67266e304a13f2133c4d8e21ddbe | p35@DMD |
| 3.29e-195 | FFCP PHASE2:Hg19::chr10:18580269..18580290,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr10:18580269..18580290, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:136699666..136699696,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr5:136699666..136699696, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:55422565..55422604, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:54952420..54952425,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:54952420..54952425, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:99033417..99033423,+#_9fff67266e304a13f2133c4d8e21ddbe | p17@MATN2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr18:56962131..56962138,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr18:56962131..56962138, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr4:20985967..20985972,-#_9fff67266e304a13f2133c4d8e21ddbe | p28@KCNIP4 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:56582028..56582062,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:56582028..56582062, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:18066319..18066337,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:18066319..18066337, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr9:37692930..37692936,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:37692930..37692936, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135515989..135515991,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135515989..135515991, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18039672..18039678,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18039672..18039678, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:13820103..13820109,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:13820103..13820109, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr6:33087873..33087886,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr6:33087873..33087886, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:17064630..17064651,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17064630..17064651, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18063669..18063678, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:121088121..121088131,+#_9fff67266e304a13f2133c4d8e21ddbe | p11@CABP1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:57914395..57914398,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:57914395..57914398, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:99734965..99734976,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:99734965..99734976, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:120969099..120969104,+#_9fff67266e304a13f2133c4d8e21ddbe | p3@WNT16 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:56628548..56628553,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:56628548..56628553, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:50898038..50898042,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:50898038..50898042, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:54952412..54952416,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:54952412..54952416, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:108616342..108616384,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:108616342..108616384, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:99033409..99033415,+#_9fff67266e304a13f2133c4d8e21ddbe | p16@MATN2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:45782001..45782009,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:45782001..45782009, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr18:56963107..56963117,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr18:56963107..56963117, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17141934..17141935, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:99860883..99860921,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:99860883..99860921, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr14:57197193..57197194,-#_9fff67266e304a13f2133c4d8e21ddbe | p1@ENST00000554597 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18042584..18042593,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18042584..18042593, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:15134610..15134617,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:15134610..15134617, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:139938385..139938390, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17040158..17040170,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17040158..17040170, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135504405..135504410,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135504405..135504410, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:128170725..128170735,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:128170725..128170735, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135522475..135522486,-#_9fff67266e304a13f2133c4d8e21ddbe | p16@ZFAT |
| 3.29e-195 | FFCP PHASE2:Hg19::chr17:74463567..74463574,+#_9fff67266e304a13f2133c4d8e21ddbe | p4@AANAT |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:4224059..4224062,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:4224059..4224062, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18041206..18041211,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18041206..18041211, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:13820103..13820109,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:13820103..13820109, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:51175701..51175708,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:51175701..51175708, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:55422565..55422604,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:55422565..55422604, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:108604491..108604499,+#_9fff67266e304a13f2133c4d8e21ddbe | p8@SLC5A7 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:18066345..18066365,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:18066345..18066365, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18067959..18067962,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18067959..18067962, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:57914395..57914398,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:57914395..57914398, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:87755845..87755852,-#_9fff67266e304a13f2133c4d8e21ddbe | p6@CNGB3 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:99860883..99860921,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:99860883..99860921, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135504353..135504365,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135504353..135504365, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:121088121..121088131,+#_9fff67266e304a13f2133c4d8e21ddbe | p11@CABP1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:44903714..44903719,+#_9fff67266e304a13f2133c4d8e21ddbe | p8@CAMKMT |
| 3.29e-195 | FFCP PHASE1:Hg19::chr9:137539895..137539904,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:137539895..137539904, + |
