UBERON:0003544: Difference between revisions
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|located_in= | |located_in= | ||
|name=brain white matter | |name=brain white matter | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000955 | |part_of=UBERON:0000955 | ||
Latest revision as of 17:40, 12 September 2014
| Name: | brain white matter | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026] | ||
| Xrefs: |
| ||
| Synonyms: |
"brain white matter of neuraxis" EXACT [OBOL:automatic] "brain white substance" EXACT [OBOL:automatic] "white matter of brain" EXACT [OBOL:automatic] "white matter of neuraxis of brain" EXACT [OBOL:automatic] "white substance of brain" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002316(white matter) |
|---|---|
| part_of: | UBERON:0000955(brain) |
Children
| is a: | UBERON:0011299 (white matter of telencephalon) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10042-101F6 (corpus callosum, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003544 (brain white matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_0a5b6cdb743afcef51a413c1f57fe79e | p@chr15:93827399..93827403, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_0a5b6cdb743afcef51a413c1f57fe79e | p@chr15:93827399..93827403, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_0a5b6cdb743afcef51a413c1f57fe79e | p3@BC032909, p3@BC032910 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_0a5b6cdb743afcef51a413c1f57fe79e | p@chr17:73689469..73689476, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_0a5b6cdb743afcef51a413c1f57fe79e | p@chr14:36462819..36462832, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_0a5b6cdb743afcef51a413c1f57fe79e | p@chr14:36462819..36462832, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_0a5b6cdb743afcef51a413c1f57fe79e | p@chr17:73689469..73689476, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_0a5b6cdb743afcef51a413c1f57fe79e | p3@BC032909, p3@BC032910 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_91981c4064ac343b4c3c48529d939573 | p@chr14:33926303..33926307, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_91981c4064ac343b4c3c48529d939573 | p@chr14:33926303..33926307, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_91981c4064ac343b4c3c48529d939573 | p41@NAV3 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_91981c4064ac343b4c3c48529d939573 | p41@NAV3 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_91981c4064ac343b4c3c48529d939573 | p@chr11:110248322..110248329, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_91981c4064ac343b4c3c48529d939573 | p@chr2:232548018..232548022, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_91981c4064ac343b4c3c48529d939573 | p@chr11:110248322..110248329, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_91981c4064ac343b4c3c48529d939573 | p@chr2:232548018..232548022, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_209ef714d574011f85818fcc440e4c8b | p@chr19:35788742..35788752, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_209ef714d574011f85818fcc440e4c8b | p10@SH3BP5 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_209ef714d574011f85818fcc440e4c8b | p10@SH3BP5 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_209ef714d574011f85818fcc440e4c8b | p@chr19:35788742..35788752, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_4be6fae4fe7b6eb43fd91f9d090e4581 | p@chr7:124391226..124391235, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_4be6fae4fe7b6eb43fd91f9d090e4581 | p5@C10orf105 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_4be6fae4fe7b6eb43fd91f9d090e4581 | p@chr8:42037488..42037504, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_4be6fae4fe7b6eb43fd91f9d090e4581 | p@chr8:42037488..42037504, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_4be6fae4fe7b6eb43fd91f9d090e4581 | p@chr17:72823919..72823924, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_4be6fae4fe7b6eb43fd91f9d090e4581 | p@chr7:124391226..124391235, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_4be6fae4fe7b6eb43fd91f9d090e4581 | p5@C10orf105 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_4be6fae4fe7b6eb43fd91f9d090e4581 | p32@NAV3 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_4be6fae4fe7b6eb43fd91f9d090e4581 | p32@NAV3 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_4be6fae4fe7b6eb43fd91f9d090e4581 | p@chr17:72823919..72823924, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_ec6a88cba0e479d48f2b7e72e42b159a | p16@FAM13C |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_ec6a88cba0e479d48f2b7e72e42b159a | p24@ARHGAP21 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_ec6a88cba0e479d48f2b7e72e42b159a | p@chr6:163681762..163681767, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_ec6a88cba0e479d48f2b7e72e42b159a | p16@FAM13C |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_ec6a88cba0e479d48f2b7e72e42b159a | p24@ARHGAP21 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_ec6a88cba0e479d48f2b7e72e42b159a | p@chr6:163681762..163681767, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_4691cb386460597e62f98b799d48ef89 | p@chr8:101522298..101522305, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_4691cb386460597e62f98b799d48ef89 | p20@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_4691cb386460597e62f98b799d48ef89 | p15@CNP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_4691cb386460597e62f98b799d48ef89 | p26@PRLR |
| 4.66e-66 | FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_4691cb386460597e62f98b799d48ef89 | p15@CNP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_4691cb386460597e62f98b799d48ef89 | p@chr7:129015806..129015815, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_4691cb386460597e62f98b799d48ef89 | p@chr8:101522298..101522305, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_4691cb386460597e62f98b799d48ef89 | p@chr7:129012882..129012891, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_4691cb386460597e62f98b799d48ef89 | p@chr4:174293011..174293022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_4691cb386460597e62f98b799d48ef89 | p20@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:645709..645712,+#_4691cb386460597e62f98b799d48ef89 | p15@PDE6B |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_4691cb386460597e62f98b799d48ef89 | p@chr13:99135698..99135706, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_4691cb386460597e62f98b799d48ef89 | p@chr13:99135698..99135706, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_4691cb386460597e62f98b799d48ef89 | p@chr14:91199850..91199861, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_4691cb386460597e62f98b799d48ef89 | p@chr14:91199850..91199861, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_4691cb386460597e62f98b799d48ef89 | p@chr4:174293011..174293022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_4691cb386460597e62f98b799d48ef89 | p26@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_4691cb386460597e62f98b799d48ef89 | p@chr7:129015806..129015815, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:645709..645712,+#_4691cb386460597e62f98b799d48ef89 | p15@PDE6B |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_4691cb386460597e62f98b799d48ef89 | p@chr7:129012882..129012891, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_7209f651b0f218e4363352d2a2e6f085 | p2@LOC154449 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_7209f651b0f218e4363352d2a2e6f085 | p2@LOC154449 |
| 2.42e-50 | FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_916004a1d4cd90061a70e0c9c2eff8f5 | p@chrX:103031196..103031205, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_916004a1d4cd90061a70e0c9c2eff8f5 | p@chr10:7454514..7454525, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_916004a1d4cd90061a70e0c9c2eff8f5 | p@chr7:30202318..30202329, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_916004a1d4cd90061a70e0c9c2eff8f5 | p31@CKAP4 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_916004a1d4cd90061a70e0c9c2eff8f5 | p31@CKAP4 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_916004a1d4cd90061a70e0c9c2eff8f5 | p6@CYP4F3 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_916004a1d4cd90061a70e0c9c2eff8f5 | p@chr10:7454514..7454525, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_916004a1d4cd90061a70e0c9c2eff8f5 | p@chrX:103031196..103031205, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_916004a1d4cd90061a70e0c9c2eff8f5 | p6@CYP4F3 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_916004a1d4cd90061a70e0c9c2eff8f5 | p@chr4:74005833..74005844, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_916004a1d4cd90061a70e0c9c2eff8f5 | p8@JAM3 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_916004a1d4cd90061a70e0c9c2eff8f5 | p8@JAM3 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_916004a1d4cd90061a70e0c9c2eff8f5 | p@chr7:30202318..30202329, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_916004a1d4cd90061a70e0c9c2eff8f5 | p@chr4:74005833..74005844, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_c5f8b92028dc34f9ee3876e14c21b51a | p@chr6:164364681..164364684, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_c5f8b92028dc34f9ee3876e14c21b51a | p@chr17:36726052..36726061, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_c5f8b92028dc34f9ee3876e14c21b51a | p@chr17:36726052..36726061, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_c5f8b92028dc34f9ee3876e14c21b51a | p@chr9:20927844..20927855, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_c5f8b92028dc34f9ee3876e14c21b51a | p@chr11:45922629..45922637, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_c5f8b92028dc34f9ee3876e14c21b51a | p@chr11:45922629..45922637, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_c5f8b92028dc34f9ee3876e14c21b51a | p8@TRIM59 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_c5f8b92028dc34f9ee3876e14c21b51a | p8@TRIM59 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_c5f8b92028dc34f9ee3876e14c21b51a | p@chr6:164364681..164364684, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_c5f8b92028dc34f9ee3876e14c21b51a | p@chr9:20927844..20927855, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_bc3477b7a15485fd1487cb74785eb671 | p6@C6orf192 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_bc3477b7a15485fd1487cb74785eb671 | p@chr11:117585539..117585541, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_bc3477b7a15485fd1487cb74785eb671 | p@chr3:190578500..190578506, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_bc3477b7a15485fd1487cb74785eb671 | p8@CARNS1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_bc3477b7a15485fd1487cb74785eb671 | p10@PTPN3 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr4:7412700..7412704,+#_bc3477b7a15485fd1487cb74785eb671 | p@chr4:7412700..7412704, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:10706167..10706179,-#_bc3477b7a15485fd1487cb74785eb671 | p@chr3:10706167..10706179, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_bc3477b7a15485fd1487cb74785eb671 | p@chr3:190578500..190578506, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_bc3477b7a15485fd1487cb74785eb671 | p@chr3:10706167..10706179, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_bc3477b7a15485fd1487cb74785eb671 | p6@C6orf192 |
| 6.58e-50 | FFCP PHASE1:Hg19::chrX:28605300..28605301,+#_bc3477b7a15485fd1487cb74785eb671 | p8@IL1RAPL1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_bc3477b7a15485fd1487cb74785eb671 | p13@TTLL4 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_bc3477b7a15485fd1487cb74785eb671 | p@chr11:117585539..117585541, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr9:112191163..112191174,-#_bc3477b7a15485fd1487cb74785eb671 | p10@PTPN3 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_bc3477b7a15485fd1487cb74785eb671 | p8@CARNS1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_bc3477b7a15485fd1487cb74785eb671 | p13@TTLL4 |
| 6.58e-50 | FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_bc3477b7a15485fd1487cb74785eb671 | p8@IL1RAPL1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_bc3477b7a15485fd1487cb74785eb671 | p38@ANKS1B |
