UBERON:0005295: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=sex cord | |name=sex cord | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922 | |part_of=UBERON:0000922 | ||
Latest revision as of 17:52, 12 September 2014
| Name: | sex cord | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female." Wikipedia:Sex_cords | ||
| Xrefs: |
| ||
| Synonyms: |
"gonad cord" RELATED [] "gonadal cord" RELATED [] "primitive sex cord" RELATED [] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005154(epithelial cord),UBERON:0005291(embryonic tissue),UBERON:0012275(meso-epithelium) |
|---|---|
| develops_from: | UBERON:0005294(genital ridge) |
| part_of: | UBERON:0000922(embryo) |
Children
| is a: | UBERON:0005297 (testis sex cord),UBERON:0010141 (primitive sex cord of indifferent gonad) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005295 (sex cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_dee50a5cc464bd87781fd742e960ea3a | p26@BDNF |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_dee50a5cc464bd87781fd742e960ea3a | p26@BDNF |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_e190fc138e6ef87f6877c3c96f40f4c1 | p43@CDC42BPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_e190fc138e6ef87f6877c3c96f40f4c1 | p9@RARRES1 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_e190fc138e6ef87f6877c3c96f40f4c1 | p9@RARRES1 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_e190fc138e6ef87f6877c3c96f40f4c1 | p43@CDC42BPA |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_661f887516a047faeee8cf49ce8f2964 | p@chr8:47529304..47529311, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_661f887516a047faeee8cf49ce8f2964 | p@chr8:69832864..69832865, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_661f887516a047faeee8cf49ce8f2964 | p@chr7:18206831..18206833, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_661f887516a047faeee8cf49ce8f2964 | p@chr2:9519086..9519101, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_661f887516a047faeee8cf49ce8f2964 | p@chr8:69832864..69832865, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_661f887516a047faeee8cf49ce8f2964 | p@chr3:193356854..193356864, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_661f887516a047faeee8cf49ce8f2964 | p@chr3:170430340..170430344, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_661f887516a047faeee8cf49ce8f2964 | p@chr13:53030077..53030083, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_661f887516a047faeee8cf49ce8f2964 | p@chr19:54600897..54600899, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_661f887516a047faeee8cf49ce8f2964 | p@chr19:40320572..40320586, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_661f887516a047faeee8cf49ce8f2964 | p7@C7orf63 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_661f887516a047faeee8cf49ce8f2964 | p@chr13:53030077..53030083, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_661f887516a047faeee8cf49ce8f2964 | p@chr7:18206831..18206833, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_661f887516a047faeee8cf49ce8f2964 | p@chr19:54600897..54600899, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_661f887516a047faeee8cf49ce8f2964 | p@chr3:193356854..193356864, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_661f887516a047faeee8cf49ce8f2964 | p@chr3:170430340..170430344, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_661f887516a047faeee8cf49ce8f2964 | p@chr2:9519086..9519101, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_661f887516a047faeee8cf49ce8f2964 | p@chr8:47529304..47529311, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_661f887516a047faeee8cf49ce8f2964 | p7@C7orf63 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_661f887516a047faeee8cf49ce8f2964 | p@chr19:40320572..40320586, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_3f4186e09030b1282e48975b171bc4a5 | p@chr2:19551668..19551679, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_3f4186e09030b1282e48975b171bc4a5 | p@chr2:19551668..19551679, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_a98fbb01501dafee037014ef43c0be93 | p@chr3:112931461..112931474, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_a98fbb01501dafee037014ef43c0be93 | p22@TMEM130 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_a98fbb01501dafee037014ef43c0be93 | p21@EPS8 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_a98fbb01501dafee037014ef43c0be93 | p@chr1:197889533..197889548, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_a98fbb01501dafee037014ef43c0be93 | p@chr3:112931461..112931474, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_a98fbb01501dafee037014ef43c0be93 | p22@TMEM130 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_a98fbb01501dafee037014ef43c0be93 | p@chr2:72803155..72803204, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_a98fbb01501dafee037014ef43c0be93 | p@chr1:197889533..197889548, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_a98fbb01501dafee037014ef43c0be93 | p@chr2:72803155..72803204, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_a98fbb01501dafee037014ef43c0be93 | p21@EPS8 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p4@GTPBP4 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p@chr5:90830481..90830492, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p@chr21:48080873..48080878, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p@chr3:170916991..170916995, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p38@PTK2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p@chr3:170916991..170916995, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p@chr3:99984127..99984138, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p@chr21:48080873..48080878, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p38@PTK2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p@chr5:90830481..90830492, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p@chr3:99984127..99984138, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_eabc20a8c4fdcb2b1bd112b60af83fb9 | p4@GTPBP4 |
| 6.41e-58 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_ef1996e82f5f0f51ce18b81e492d3636 | p4@Spink12 |
| 6.41e-58 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_ef1996e82f5f0f51ce18b81e492d3636 | p4@Spink12 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0 | p8@TCF21 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0 | p8@TCF21 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0 | p@chr2:177009137..177009140, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0 | p@chr11:114173606..114173612, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0 | p@chr2:177009137..177009140, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0 | p@chr11:114173606..114173612, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_d4251190e991aad4bf051df5ac9d3759 | p31@ZNF331 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_d4251190e991aad4bf051df5ac9d3759 | p11@USP25 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_d4251190e991aad4bf051df5ac9d3759 | p6@C2orf63 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_d4251190e991aad4bf051df5ac9d3759 | p31@ZNF331 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_d4251190e991aad4bf051df5ac9d3759 | p@chr5:144875561..144875565, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_d4251190e991aad4bf051df5ac9d3759 | p32@CREB3L2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_d4251190e991aad4bf051df5ac9d3759 | p@chr3:46477553..46477563, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_d4251190e991aad4bf051df5ac9d3759 | p11@USP25 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_d4251190e991aad4bf051df5ac9d3759 | p6@C2orf63 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_d4251190e991aad4bf051df5ac9d3759 | p@chr15:39288691..39288698, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_d4251190e991aad4bf051df5ac9d3759 | p@chr15:39288691..39288698, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_d4251190e991aad4bf051df5ac9d3759 | p@chr5:144875561..144875565, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_d4251190e991aad4bf051df5ac9d3759 | p@chr3:46477553..46477563, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_d4251190e991aad4bf051df5ac9d3759 | p32@CREB3L2 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:829412..829430,+#_223004120a02927b0e96ab348265ef83 | p11@EFCAB4A |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_223004120a02927b0e96ab348265ef83 | p@chr12:5198350..5198359, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_223004120a02927b0e96ab348265ef83 | p@chr15:39420650..39420666, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_223004120a02927b0e96ab348265ef83 | p10@ESR2 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_223004120a02927b0e96ab348265ef83 | p10@ESR2 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_223004120a02927b0e96ab348265ef83 | p@chr15:39420650..39420666, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_223004120a02927b0e96ab348265ef83 | p@chr4:103969123..103969127, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:829412..829430,+#_223004120a02927b0e96ab348265ef83 | p11@EFCAB4A |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_223004120a02927b0e96ab348265ef83 | p@chr4:103969123..103969127, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_223004120a02927b0e96ab348265ef83 | p@chr12:5198350..5198359, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_ab2e4059470e01ac4f8fad9c37658f8b | p3@CACNA1H |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_ab2e4059470e01ac4f8fad9c37658f8b | p51@CDK6 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_ab2e4059470e01ac4f8fad9c37658f8b | p51@CDK6 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_ab2e4059470e01ac4f8fad9c37658f8b | p13@SOS2 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_ab2e4059470e01ac4f8fad9c37658f8b | p1@LOC645638 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_ab2e4059470e01ac4f8fad9c37658f8b | p13@SOS2 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_ab2e4059470e01ac4f8fad9c37658f8b | p3@CACNA1H |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_ab2e4059470e01ac4f8fad9c37658f8b | p1@LOC645638 |
| 4.52e-44 | FFCP PHASE1:Mm9::chr17:75581992..75582009,+#_edf8ff20c090f1cbc24aceeeea691b2e | p@chr17:75581992..75582009, + |
| 4.52e-44 | FFCP PHASE2:Mm9::chr17:75581992..75582009,+#_edf8ff20c090f1cbc24aceeeea691b2e | p@chr17:75581992..75582009, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_0903e266ac2844a324b26af184100e0e | p@chr3:194214959..194214968, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_0903e266ac2844a324b26af184100e0e | p@chr3:194214959..194214968, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr13:49549473..49549480,+#_5048498a0a723d99488b7c3d6d96eea8 | p@chr13:49549473..49549480, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chr15:34522001..34522013,+#_5048498a0a723d99488b7c3d6d96eea8 | p@chr15:34522001..34522013, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr15:34522001..34522013,+#_5048498a0a723d99488b7c3d6d96eea8 | p@chr15:34522001..34522013, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr11:110581726..110581728,-#_5048498a0a723d99488b7c3d6d96eea8 | p@chr11:110581726..110581728, - |
