UBERON:0010286: Difference between revisions
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|located_in= | |located_in= | ||
|name=midbrain neural tube | |name=midbrain neural tube | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0003080 | |part_of=UBERON:0003080 | ||
Latest revision as of 18:08, 12 September 2014
| Name: | midbrain neural tube | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Portion of neural tube that gives rise to the midbrain." [ZFA:0007039] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue) |
|---|---|
| part_of: | UBERON:0003080(anterior neural tube) |
Children
| develops from: | UBERON:0009616 (presumptive midbrain) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010286 (midbrain neural tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_9768417f73cb6e108417440f99f2affa | p@chr10:68718064..68718067, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_9768417f73cb6e108417440f99f2affa | p@chr10:68718064..68718067, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_9768417f73cb6e108417440f99f2affa | p5@C1orf130 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_9768417f73cb6e108417440f99f2affa | p5@C1orf130 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_9768417f73cb6e108417440f99f2affa | p59@ANK3 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_9768417f73cb6e108417440f99f2affa | p59@ANK3 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_9768417f73cb6e108417440f99f2affa | p@chr9:139916913..139916917, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_9768417f73cb6e108417440f99f2affa | p@chr9:139916913..139916917, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_9768417f73cb6e108417440f99f2affa | p@chr4:56229918..56229919, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_9768417f73cb6e108417440f99f2affa | p@chr4:56229918..56229919, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_bb97fd695d6f02bfc83a6104ba1aedb3 | p@chr18:74702556..74702558, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_bb97fd695d6f02bfc83a6104ba1aedb3 | p@chr5:57935348..57935354, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_bb97fd695d6f02bfc83a6104ba1aedb3 | p@chr5:57935348..57935354, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_bb97fd695d6f02bfc83a6104ba1aedb3 | p@chr1:65776926..65776928, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_bb97fd695d6f02bfc83a6104ba1aedb3 | p@chr18:74702556..74702558, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_bb97fd695d6f02bfc83a6104ba1aedb3 | p@chr1:65776926..65776928, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_ec059ca11a7b2f70a427db088604b41a | p@chr10:22967066..22967069, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_ec059ca11a7b2f70a427db088604b41a | p@chr16:57309513..57309516, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_ec059ca11a7b2f70a427db088604b41a | p@chr16:57309513..57309516, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_ec059ca11a7b2f70a427db088604b41a | p6@PKD1L2 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_ec059ca11a7b2f70a427db088604b41a | p@chr8:53312058..53312067, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_ec059ca11a7b2f70a427db088604b41a | p@chr8:53312058..53312067, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_ec059ca11a7b2f70a427db088604b41a | p@chr10:22967066..22967069, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_ec059ca11a7b2f70a427db088604b41a | p6@PKD1L2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_cc260b842af583953ae41ea104adb9cd | p@chr11:7340444..7340448, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_cc260b842af583953ae41ea104adb9cd | p@chr14:95727527..95727529, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_cc260b842af583953ae41ea104adb9cd | p@chr14:95727527..95727529, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_cc260b842af583953ae41ea104adb9cd | p@chr1:44956567..44956571, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_cc260b842af583953ae41ea104adb9cd | p@chr11:7340444..7340448, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_cc260b842af583953ae41ea104adb9cd | p@chr1:44956567..44956571, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_9043eea9c0bda32b236908f6af487883 | p@chr13:43872447..43872452, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_9043eea9c0bda32b236908f6af487883 | p@chr9:79516011..79516022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_9043eea9c0bda32b236908f6af487883 | p@chr13:34922094..34922105, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_9043eea9c0bda32b236908f6af487883 | p8@OMG |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_9043eea9c0bda32b236908f6af487883 | p@chr13:34922094..34922105, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_9043eea9c0bda32b236908f6af487883 | p@chr14:105166013..105166017, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_9043eea9c0bda32b236908f6af487883 | p@chr14:105166013..105166017, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_9043eea9c0bda32b236908f6af487883 | p@chr9:79516011..79516022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_9043eea9c0bda32b236908f6af487883 | p8@OMG |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_9043eea9c0bda32b236908f6af487883 | p@chr13:43872447..43872452, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_446aab7d8e6f245cb80d710f4aaafc03 | p@chrX:28627633..28627642, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_446aab7d8e6f245cb80d710f4aaafc03 | p@chrX:28627633..28627642, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_446aab7d8e6f245cb80d710f4aaafc03 | p@chr9:108178201..108178203, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_446aab7d8e6f245cb80d710f4aaafc03 | p@chr9:108178201..108178203, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_31e1e88b42476749ba702b19f7795ca6 | p@chr6:134626498..134626502, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_31e1e88b42476749ba702b19f7795ca6 | p@chr6:134626498..134626502, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_31e1e88b42476749ba702b19f7795ca6 | p@chr6:89803656..89803659, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_31e1e88b42476749ba702b19f7795ca6 | p@chr6:89803656..89803659, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_31e1e88b42476749ba702b19f7795ca6 | p@chr20:52570026..52570037, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_31e1e88b42476749ba702b19f7795ca6 | p@chr20:52570026..52570037, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_31e1e88b42476749ba702b19f7795ca6 | p@chr3:50717966..50717971, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_31e1e88b42476749ba702b19f7795ca6 | p@chr3:50717966..50717971, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_d1e83dbf13cc95002434f61a4d74508d | p@chr17:3479944..3479947, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_d1e83dbf13cc95002434f61a4d74508d | p@chr1:161275096..161275109, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_d1e83dbf13cc95002434f61a4d74508d | p@chr9:19515907..19515918, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_d1e83dbf13cc95002434f61a4d74508d | p@chr1:161275096..161275109, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_d1e83dbf13cc95002434f61a4d74508d | p@chr22:48980473..48980481, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_d1e83dbf13cc95002434f61a4d74508d | p@chr22:48980473..48980481, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_d1e83dbf13cc95002434f61a4d74508d | p10@KCNJ10 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_d1e83dbf13cc95002434f61a4d74508d | p10@KCNJ10 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_d1e83dbf13cc95002434f61a4d74508d | p2@LOC285796 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_d1e83dbf13cc95002434f61a4d74508d | p2@LOC285796 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_d1e83dbf13cc95002434f61a4d74508d | p@chr9:137240632..137240635, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_d1e83dbf13cc95002434f61a4d74508d | p@chr9:137240632..137240635, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_d1e83dbf13cc95002434f61a4d74508d | p@chr18:26665245..26665249, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_d1e83dbf13cc95002434f61a4d74508d | p21@PLEKHG1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_d1e83dbf13cc95002434f61a4d74508d | p@chr17:70910145..70910148, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_d1e83dbf13cc95002434f61a4d74508d | p@chr17:3479944..3479947, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_d1e83dbf13cc95002434f61a4d74508d | p21@PLEKHG1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_d1e83dbf13cc95002434f61a4d74508d | p@chr18:26665245..26665249, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_d1e83dbf13cc95002434f61a4d74508d | p@chr9:19515907..19515918, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_d1e83dbf13cc95002434f61a4d74508d | p@chr17:70910145..70910148, - |
| 2.38e-43 | FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_3dbde2c95fb95f55071bca818f67d4d6 | p@chr19:40804786..40804795, - |
| 2.38e-43 | FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_3dbde2c95fb95f55071bca818f67d4d6 | p@chr19:40804786..40804795, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_48b8ef6d8d7612bfdc6c276d07c97646 | p4@C5orf64 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_48b8ef6d8d7612bfdc6c276d07c97646 | p4@C5orf64 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_48b8ef6d8d7612bfdc6c276d07c97646 | p@chr4:139891920..139891924, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_48b8ef6d8d7612bfdc6c276d07c97646 | p@chr4:139891920..139891924, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_5a749aceabd9c6a743fe191416575ff2 | p@chrX:13792462..13792477, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_5a749aceabd9c6a743fe191416575ff2 | p@chrX:13792462..13792477, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_5a749aceabd9c6a743fe191416575ff2 | p@chr13:21100208..21100214, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_5a749aceabd9c6a743fe191416575ff2 | p@chr5:152017019..152017026, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_5a749aceabd9c6a743fe191416575ff2 | p@chr5:152017019..152017026, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_5a749aceabd9c6a743fe191416575ff2 | p@chr13:21100208..21100214, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_e47df2a26c2c7465d1faffddf2782dfd | p10@CELSR2 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_e47df2a26c2c7465d1faffddf2782dfd | p10@CELSR2 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_e47df2a26c2c7465d1faffddf2782dfd | p@chr17:71046459..71046462, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_e47df2a26c2c7465d1faffddf2782dfd | p@chr9:139911084..139911102, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_e47df2a26c2c7465d1faffddf2782dfd | p@chr9:139911084..139911102, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_e47df2a26c2c7465d1faffddf2782dfd | p@chr17:71046459..71046462, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_e47df2a26c2c7465d1faffddf2782dfd | p@chr1:161275238..161275250, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_e47df2a26c2c7465d1faffddf2782dfd | p@chr1:161275238..161275250, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_e47df2a26c2c7465d1faffddf2782dfd | p@chr2:135170207..135170218, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_e47df2a26c2c7465d1faffddf2782dfd | p@chr2:135170207..135170218, + |
| 2.21e-40 | FFCP PHASE2:Hg19::chr8:27522642..27522647,+#_e34ae49bd04ebad0c85caa0474bad41d | p@chr8:27522642..27522647, + |
| 2.21e-40 | FFCP PHASE1:Hg19::chrX:103046993..103046994,+#_e34ae49bd04ebad0c85caa0474bad41d | p@chrX:103046993..103046994, + |
| 2.21e-40 | FFCP PHASE2:Hg19::chrX:103046993..103046994,+#_e34ae49bd04ebad0c85caa0474bad41d | p@chrX:103046993..103046994, + |
| 2.21e-40 | FFCP PHASE1:Hg19::chr8:27522642..27522647,+#_e34ae49bd04ebad0c85caa0474bad41d | p@chr8:27522642..27522647, + |
| 2.21e-40 | FFCP PHASE1:Hg19::chr9:19513297..19513309,-#_e34ae49bd04ebad0c85caa0474bad41d | p4@SLC24A2 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr9:19513297..19513309,-#_e34ae49bd04ebad0c85caa0474bad41d | p4@SLC24A2 |
