UBERON:0010316: Difference between revisions
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|located_in= | |located_in= | ||
|name=germ layer / neural crest | |name=germ layer / neural crest | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:09, 12 September 2014
| Name: | germ layer / neural crest |
|---|---|
| Namespace: | FANTOM |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005291(embryonic tissue) |
|---|---|
| develops_from: | UBERON:0002532(epiblast (generic)) |
Children
| is a: | UBERON:0000923 (germ layer),UBERON:0002342 (neural crest) |
|---|---|
| develops from: | UBERON:0010317 (germ layer / neural crest derived structure) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10637-108I7 (neuroectodermal tumor cell line:FU-RPNT-1)
- 10663-109C6 (neuroectodermal tumor cell line:FU-RPNT-2)
- 10697-109G4 (peripheral neuroectodermal tumor cell line:KU-SN)
- 10774-110F9 (neuroectodermal tumor cell line:TASK1)
- 11947-126B3 (Mesoderm, embryo E8.5)
Mouse (Mus musculus)
- 10637-108I7 (neuroectodermal tumor cell line:FU-RPNT-1)
- 10663-109C6 (neuroectodermal tumor cell line:FU-RPNT-2)
- 10697-109G4 (peripheral neuroectodermal tumor cell line:KU-SN)
- 10774-110F9 (neuroectodermal tumor cell line:TASK1)
- 11947-126B3 (Mesoderm, embryo E8.5)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010316 (germ layer / neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.5e-31 | FFCP PHASE2:Hg19::chr20:23618584..23618603,-#_256d82c877ea551ba5134aebea3042a2 | p1@CST3 |
| 7.5e-31 | FFCP PHASE1:Hg19::chr20:23618584..23618603,-#_256d82c877ea551ba5134aebea3042a2 | p1@CST3 |
| 6.91e-29 | FFCP PHASE1:Hg19::chr13:77460532..77460548,-#_0a885fc5d29167bf79045550ed94e155 | p1@KCTD12 |
| 6.91e-29 | FFCP PHASE2:Hg19::chr13:77460532..77460548,-#_0a885fc5d29167bf79045550ed94e155 | p1@KCTD12 |
| 1.31e-28 | FFCP PHASE1:Hg19::chr13:45010939..45011033,-#_b0add6070627175df01aa081b0fa5aca | p1@TSC22D1 |
| 1.31e-28 | FFCP PHASE2:Hg19::chr13:45010939..45011033,-#_b0add6070627175df01aa081b0fa5aca | p1@TSC22D1 |
| 6.82e-28 | FFCP PHASE1:Hg19::chr2:230135937..230136016,-#_9151058bcb2c377d9898700aff2bb70b | p1@PID1 |
| 6.82e-28 | FFCP PHASE2:Hg19::chr2:230135937..230136016,-#_9151058bcb2c377d9898700aff2bb70b | p1@PID1 |
| 1.74e-26 | FFCP PHASE2:Hg19::chr7:111846435..111846471,-#_5d9dc0fadd10e80a68a55c122c670fe2 | p1@DOCK4 |
| 1.74e-26 | FFCP PHASE1:Hg19::chr7:111846435..111846471,-#_5d9dc0fadd10e80a68a55c122c670fe2 | p1@DOCK4 |
| 4.12e-26 | FFCP PHASE2:Hg19::chr11:1330834..1330875,-#_c57a3c3c832e4cb3478a1a20010d99da | p1@TOLLIP |
| 4.12e-26 | FFCP PHASE1:Hg19::chr11:1330834..1330875,-#_c57a3c3c832e4cb3478a1a20010d99da | p1@TOLLIP |
| 6.68e-25 | FFCP PHASE2:Hg19::chr12:112204714..112204781,+#_0aac509350b31b99356bf6c76f3abbb7 | p1@ALDH2 |
| 6.68e-25 | FFCP PHASE1:Hg19::chr12:112204714..112204781,+#_0aac509350b31b99356bf6c76f3abbb7 | p1@ALDH2 |
| 6.83e-25 | FFCP PHASE2:Hg19::chr13:77460594..77460613,-#_3920210624824232d400f935e5f8d795 | p3@KCTD12 |
| 6.83e-25 | FFCP PHASE1:Hg19::chr13:77460594..77460613,-#_3920210624824232d400f935e5f8d795 | p3@KCTD12 |
| 1.27e-24 | FFCP PHASE1:Hg19::chr4:85887789..85887862,-#_98e49a6692b657accdc6818d39f7ca49 | p1@WDFY3 |
| 1.27e-24 | FFCP PHASE2:Hg19::chr4:85887789..85887862,-#_98e49a6692b657accdc6818d39f7ca49 | p1@WDFY3 |
| 6.07e-24 | FFCP PHASE2:Hg19::chr16:4852616..4852679,-#_3b3dbc2c9c144d21a4bdee912a09553c | p1@ROGDI |
| 6.07e-24 | FFCP PHASE1:Hg19::chr16:4852616..4852679,-#_3b3dbc2c9c144d21a4bdee912a09553c | p1@ROGDI |
| 1.62e-23 | FFCP PHASE1:Hg19::chr1:183774240..183774270,+#_e70b4ed08a2f573f4cf99336400f7c6b | p1@RGL1 |
| 1.62e-23 | FFCP PHASE2:Hg19::chr1:183774240..183774270,+#_e70b4ed08a2f573f4cf99336400f7c6b | p1@RGL1 |
| 2.33e-23 | FFCP PHASE1:Hg19::chr8:30670289..30670354,-#_1086ee59c55ccc428e5b4740e7f6fdc1 | p1@PPP2CB |
| 2.33e-23 | FFCP PHASE2:Hg19::chr8:30670289..30670354,-#_1086ee59c55ccc428e5b4740e7f6fdc1 | p1@PPP2CB |
| 2.57e-23 | FFCP PHASE2:Hg19::chr13:77460635..77460654,-#_dc6d48af7796bd957cd349995e108164 | p2@KCTD12 |
| 2.57e-23 | FFCP PHASE1:Hg19::chr13:77460635..77460654,-#_dc6d48af7796bd957cd349995e108164 | p2@KCTD12 |
| 4.06e-23 | FFCP PHASE1:Hg19::chr4:159094160..159094185,-#_893431a2ad17bf2fc3727919efceedba | p2@FAM198B |
| 4.06e-23 | FFCP PHASE2:Hg19::chr4:159094160..159094185,-#_893431a2ad17bf2fc3727919efceedba | p2@FAM198B |
| 6.15e-23 | FFCP PHASE1:Hg19::chr15:90456156..90456198,-#_8f5cb1440ef1b828fb8bdf57a999612b | p1@C15orf38 |
| 6.15e-23 | FFCP PHASE2:Hg19::chr15:90456156..90456198,-#_8f5cb1440ef1b828fb8bdf57a999612b | p1@C15orf38 |
| 7.82e-23 | FFCP PHASE1:Hg19::chr19:40871734..40871809,+#_1cc1ae1b3d54c3d43e5e8c1b3e409995 | p1@PLD3 |
| 7.82e-23 | FFCP PHASE2:Hg19::chr19:40871734..40871809,+#_1cc1ae1b3d54c3d43e5e8c1b3e409995 | p1@PLD3 |
| 1.53e-22 | FFCP PHASE1:Hg19::chr16:2563989..2564006,+#_078710a8ee79a757cbc8aafa9319f7cf | p2@ATP6V0C |
| 1.53e-22 | FFCP PHASE2:Hg19::chr16:2563989..2564006,+#_078710a8ee79a757cbc8aafa9319f7cf | p2@ATP6V0C |
| 2.37e-22 | FFCP PHASE1:Hg19::chr20:35974484..35974529,+#_fdd32a863bdd8b084aac838c66b6efc6 | p2@SRC |
| 2.37e-22 | FFCP PHASE2:Hg19::chr20:35974484..35974529,+#_fdd32a863bdd8b084aac838c66b6efc6 | p2@SRC |
| 5.65e-22 | FFCP PHASE2:Hg19::chr11:65082349..65082378,+#_55ae5a076096bf7d54227d0668b318b9 | p1@CDC42EP2 |
| 5.65e-22 | FFCP PHASE1:Hg19::chr11:65082349..65082378,+#_55ae5a076096bf7d54227d0668b318b9 | p1@CDC42EP2 |
| 5.66e-22 | FFCP PHASE2:Hg19::chr17:1466030..1466129,-#_28c3d6c39e7ad3402e51b103a2547bd7 | p1@PITPNA |
| 5.66e-22 | FFCP PHASE1:Hg19::chr17:1466030..1466129,-#_28c3d6c39e7ad3402e51b103a2547bd7 | p1@PITPNA |
| 5.93e-22 | FFCP PHASE1:Hg19::chr19:6720653..6720670,-#_5b4ca65abdfc1f391715bde4eb6b5668 | p1@C3 |
| 5.93e-22 | FFCP PHASE2:Hg19::chr19:6720653..6720670,-#_5b4ca65abdfc1f391715bde4eb6b5668 | p1@C3 |
| 6.18e-22 | FFCP PHASE2:Hg19::chr7:2671611..2671658,+#_729109e95556e91cb13d844531ce594f | p2@TTYH3 |
| 6.18e-22 | FFCP PHASE1:Hg19::chr7:2671611..2671658,+#_729109e95556e91cb13d844531ce594f | p2@TTYH3 |
| 1.1e-21 | FFCP PHASE1:Hg19::chr2:127864839..127864888,-#_41c09562a9802933db52ec28c23280cd | p2@BIN1 |
| 1.1e-21 | FFCP PHASE2:Hg19::chr2:127864839..127864888,-#_41c09562a9802933db52ec28c23280cd | p2@BIN1 |
| 2.41e-21 | FFCP PHASE2:Hg19::chr17:73851380..73851427,-#_bc343025812a91bfecb58c9d394a4066 | p1@WBP2 |
| 2.41e-21 | FFCP PHASE1:Hg19::chr17:73851380..73851427,-#_bc343025812a91bfecb58c9d394a4066 | p1@WBP2 |
| 3.59e-21 | FFCP PHASE1:Hg19::chr22:31003154..31003188,+#_92504f2e482c9ee0ef0e7a6aa3d8b182 | p1@TCN2 |
| 3.59e-21 | FFCP PHASE2:Hg19::chr22:31003154..31003188,+#_92504f2e482c9ee0ef0e7a6aa3d8b182 | p1@TCN2 |
| 3.69e-21 | FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_ce870c9af84d1bccdcbef214566e0002 | p1@NFIB |
| 3.69e-21 | FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_ce870c9af84d1bccdcbef214566e0002 | p1@NFIB |
| 4.02e-21 | FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_b0fe3dbc8bbea3de82c474be240006bc | p2@NFIB |
| 4.02e-21 | FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_b0fe3dbc8bbea3de82c474be240006bc | p2@NFIB |
| 4.54e-21 | FFCP PHASE1:Hg19::chr19:44100155..44100211,-#_7c1216b455cb45c0891b76023df63c10 | p1@IRGQ |
| 4.54e-21 | FFCP PHASE2:Hg19::chr19:44100155..44100211,-#_7c1216b455cb45c0891b76023df63c10 | p1@IRGQ |
| 5.7e-21 | FFCP PHASE1:Hg19::chr4:24914581..24914691,-#_9f02eac27a33433fda83b1ea3d469f27 | p1@CCDC149 |
| 5.7e-21 | FFCP PHASE2:Hg19::chr4:24914581..24914691,-#_9f02eac27a33433fda83b1ea3d469f27 | p1@CCDC149 |
| 6.27e-21 | FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_11fe85a43e5e12c974b0ef82bd0d4375 | p1@BIN1 |
| 6.27e-21 | FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_11fe85a43e5e12c974b0ef82bd0d4375 | p1@BIN1 |
| 1.02e-20 | FFCP PHASE1:Hg19::chr19:14228541..14228582,-#_afa6a7b4fc9db4af08da8e416d8967eb | p1@PRKACA |
| 1.02e-20 | FFCP PHASE2:Hg19::chr19:14228541..14228582,-#_afa6a7b4fc9db4af08da8e416d8967eb | p1@PRKACA |
| 1.29e-20 | FFCP PHASE1:Hg19::chr16:89787269..89787359,-#_d6cdba83c4c22756362982517ef3afb2 | p1@C16orf7 |
| 1.29e-20 | FFCP PHASE2:Hg19::chr16:89787269..89787359,-#_d6cdba83c4c22756362982517ef3afb2 | p1@C16orf7 |
| 1.45e-20 | FFCP PHASE1:Hg19::chr1:10270620..10270637,+#_d5c0f7a4377dbde049d513f5f291794c | p1@KIF1B |
| 1.45e-20 | FFCP PHASE2:Hg19::chr1:10270620..10270637,+#_d5c0f7a4377dbde049d513f5f291794c | p1@KIF1B |
| 2.63e-20 | FFCP PHASE2:Hg19::chr18:59561635..59561651,-#_4358bbc4a9d6e249a2c396eb6a383b12 | p@chr18:59561635..59561651, - |
| 2.63e-20 | FFCP PHASE1:Hg19::chr18:59561635..59561651,-#_4358bbc4a9d6e249a2c396eb6a383b12 | p@chr18:59561635..59561651, - |
| 3.08e-20 | FFCP PHASE2:Hg19::chr12:52345448..52345532,+#_aabf0b469747374b801b06a5c370d26b | p1@ACVR1B |
| 3.08e-20 | FFCP PHASE1:Hg19::chr12:52345448..52345532,+#_aabf0b469747374b801b06a5c370d26b | p1@ACVR1B |
| 3.96e-20 | FFCP PHASE2:Hg19::chr20:23614485..23614564,-#_d7295e16103af3d3f6fa9e3a5f09bcf3 | p@chr20:23614485..23614564, - |
| 3.96e-20 | FFCP PHASE1:Hg19::chr20:23614485..23614564,-#_d7295e16103af3d3f6fa9e3a5f09bcf3 | p@chr20:23614485..23614564, - |
| 5.35e-20 | FFCP PHASE1:Hg19::chr1:68698197..68698214,-#_0a4a5ca46a5b372e5e917eca72da4230 | p1@WLS |
| 5.35e-20 | FFCP PHASE2:Hg19::chr1:68698197..68698214,-#_0a4a5ca46a5b372e5e917eca72da4230 | p1@WLS |
| 6.51e-20 | FFCP PHASE2:Hg19::chr10:30025922..30025958,-#_772342fabf2020bbb1fdece5313d8ad2 | p3@SVIL |
| 6.51e-20 | FFCP PHASE1:Hg19::chr10:30025922..30025958,-#_772342fabf2020bbb1fdece5313d8ad2 | p3@SVIL |
| 6.99e-20 | FFCP PHASE2:Hg19::chr15:64995399..64995422,-#_e3c3b3816acd078c33b0447e94d93520 | p1@OAZ2 |
| 6.99e-20 | FFCP PHASE1:Hg19::chr15:64995399..64995422,-#_e3c3b3816acd078c33b0447e94d93520 | p1@OAZ2 |
| 8.06e-20 | FFCP PHASE1:Hg19::chr9:34989685..34989748,+#_0138781322affb02dc97e275aea60792 | p1@DNAJB5 |
| 8.06e-20 | FFCP PHASE2:Hg19::chr9:34989685..34989748,+#_0138781322affb02dc97e275aea60792 | p1@DNAJB5 |
| 9.9e-20 | FFCP PHASE1:Hg19::chrX:100333858..100333876,+#_bfb1ae6d49bb87a6b3f3f9eba96130fc | p1@TMEM35 |
| 9.9e-20 | FFCP PHASE2:Hg19::chrX:100333858..100333876,+#_bfb1ae6d49bb87a6b3f3f9eba96130fc | p1@TMEM35 |
| 1.09e-19 | FFCP PHASE1:Hg19::chr16:2563941..2563983,+#_562c416734ba2ea54680133705740f45 | p1@ATP6V0C |
| 1.09e-19 | FFCP PHASE2:Hg19::chr16:2563941..2563983,+#_562c416734ba2ea54680133705740f45 | p1@ATP6V0C |
| 1.11e-19 | FFCP PHASE1:Hg19::chr17:68165657..68165688,+#_4d6e1754d94bf92e8961588a20adaeeb | p1@KCNJ2 |
| 1.11e-19 | FFCP PHASE2:Hg19::chr17:68165657..68165688,+#_4d6e1754d94bf92e8961588a20adaeeb | p1@KCNJ2 |
| 1.12e-19 | FFCP PHASE2:Hg19::chr17:7492684..7492778,-#_bdb3180386eb6d27e32e52a49d4918e8 | p2@SOX15 |
| 1.12e-19 | FFCP PHASE1:Hg19::chr17:7492684..7492778,-#_bdb3180386eb6d27e32e52a49d4918e8 | p2@SOX15 |
| 1.16e-19 | FFCP PHASE1:Hg19::chr19:11466086..11466159,+#_563444897d2efa09968f032d920cdfbb | p1@LPPR2 |
| 1.16e-19 | FFCP PHASE2:Hg19::chr19:11466086..11466159,+#_563444897d2efa09968f032d920cdfbb | p1@LPPR2 |
| 1.32e-19 | FFCP PHASE2:Hg19::chr18:59561658..59561685,-#_0b4e9b8f283994fff86b236cff2e8712 | p@chr18:59561658..59561685, - |
| 1.32e-19 | FFCP PHASE1:Hg19::chr18:59561658..59561685,-#_0b4e9b8f283994fff86b236cff2e8712 | p@chr18:59561658..59561685, - |
| 1.38e-19 | FFCP PHASE1:Hg19::chr12:110719036..110719113,+#_9d052bc3e1a9305a8db5684427c56ce6 | p1@ATP2A2 |
| 1.38e-19 | FFCP PHASE2:Hg19::chr12:110719036..110719113,+#_9d052bc3e1a9305a8db5684427c56ce6 | p1@ATP2A2 |
| 1.45e-19 | FFCP PHASE1:Hg19::chr6:123110389..123110441,+#_182c49bb53f3984a899ce0b62005088c | p1@SMPDL3A |
| 1.45e-19 | FFCP PHASE2:Hg19::chr6:123110389..123110441,+#_182c49bb53f3984a899ce0b62005088c | p1@SMPDL3A |
| 1.86e-19 | FFCP PHASE1:Hg19::chr10:118764649..118764683,-#_ae9fa991454446dd411d5524d5adfca4 | p2@KIAA1598 |
| 1.86e-19 | FFCP PHASE2:Hg19::chr10:118764649..118764683,-#_ae9fa991454446dd411d5524d5adfca4 | p2@KIAA1598 |
| 3.3e-19 | FFCP PHASE2:Hg19::chr2:153191678..153191697,+#_e4e5d5e4f02a4cc59190b7535bfad104 | p1@FMNL2 |
| 3.3e-19 | FFCP PHASE1:Hg19::chr2:153191678..153191697,+#_e4e5d5e4f02a4cc59190b7535bfad104 | p1@FMNL2 |
