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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005510
|DRA_sample_Accession=CAGE@SAMD00005510
|accession_numbers=CAGE;DRX008252;DRR009124;DRZ000549;DRZ001934
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005510
|accession_numbers=CAGE;DRX008252;DRR009124;DRZ000549;DRZ001934;DRZ011899;DRZ013284
|accession_numbers_RNASeq=sRNA-Seq;DRX037249;DRR041615;DRZ007257
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002550
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002550
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|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.28!190.97!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.82!173.63!TWIST1;;chr6:34204921..34204939,+!p3@HMGA1!1.80!1743.35!HMGA1;;chr17:46132044..46132080,+!p4@NFE2L1!1.73!52.25!NFE2L1;;chr19:46801639..46801699,+!p1@HIF3A!1.70!49.21!HIF3A;;chr6:50786591..50786614,+!p1@TFAP2B!1.58!37.02!TFAP2B;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!148.56!CREB3L1;;chr20:42543441..42543497,+!p1@TOX2!1.48!127.94!TOX2;;chr8:72756637..72756664,-!p3@MSC!1.47!32.57!MSC;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.04!SIX1;;chr5:2751762..2751784,-!p1@IRX2!1.40!24.37!IRX2;;chr6:41562324..41562340,+!p16@FOXP4!1.38!23.20!FOXP4;;chr8:72756063..72756125,-!p1@MSC!1.33!40.54!MSC;;chr16:86544113..86544145,+!p1@FOXF1!1.32!24.60!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!1.31!60.69!TWIST2;;chr8:72756667..72756736,-!p2@MSC!1.31!30.46!MSC;;chr8:72756267..72756296,-!p4@MSC!1.29!27.18!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.27!23.67!PRRX1;;chr6:85474299..85474324,-!p1@TBX18!1.22!27.65!TBX18;;chr9:132427972..132428056,+!p1@PRRX2!1.22!20.15!PRRX2;;chr3:138665937..138665968,-!p1@FOXL2!1.18!14.29!FOXL2;;chr20:42543506..42543549,+!p2@TOX2!1.17!33.27!TOX2;;chr17:41622765..41622821,-!p2@ETV4!1.17!20.85!ETV4;;chr4:111558135..111558198,-!p2@PITX2!1.16!13.36!PITX2;;chr9:132427883..132427951,+!p2@PRRX2!1.15!13.12!PRRX2;;chr5:92918919..92918942,+!p1@NR2F1!1.12!53.89!NR2F1;;chr17:41623009..41623053,-!p4@ETV4!1.11!19.45!ETV4;;chr17:41622925..41622976,-!p3@ETV4!1.11!17.81!ETV4;;chr7:19157043..19157088,-!p2@TWIST1!1.09!28.82!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.09!19.45!TWIST2;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.08!11.01!MEF2B;;chr7:44143925..44143970,+!p1@AEBP1!1.06!234.79!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.06!17.81!CREB3L1;;chr20:55204351..55204377,+!p1@TFAP2C!1.05!13.12!TFAP2C;;chr2:19558373..19558392,-!p1@OSR1!1.04!27.88!OSR1;;chr18:52969674..52969685,-!p24@TCF4!1.01!9.14!TCF4;;chr3:138665969..138665993,-!p2@FOXL2!0.96!8.20!FOXL2;;chr3:12329397..12329433,+!p2@PPARG!0.95!18.28!PPARG;;chr19:45260775..45260838,+!p5@BCL3!0.94!10.08!BCL3;;chr6:85473156..85473210,-!p2@TBX18!0.94!9.61!TBX18;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.67!PRRX1;;chr1:119530493..119530572,-!p1@TBX15!0.93!7.50!TBX15;;chr12:85673977..85674015,+!p1@ALX1!0.93!7.50!ALX1;;chr7:28448965..28448994,+!p2@CREB5!0.92!26.95!CREB5;;chr6:1389789..1389821,+!p1@FOXF2!0.92!10.31!FOXF2;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.44!BNC1;;chr12:85673868..85673881,+!p2@ALX1!0.92!7.26!ALX1;;chr15:57511609..57511651,+!p2@TCF12!0.91!12.18!TCF12;;chr3:185826855..185826911,-!p1@ETV5!0.90!199.88!ETV5;;chr6:10415276..10415341,-!p2@TFAP2A!0.90!8.67!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!0.90!7.03!IRX2;;chr5:76383133..76383186,-!p2@ZBED3!0.89!14.29!ZBED3;;chr8:93074803..93074845,-!p1@RUNX1T1!0.89!6.80!RUNX1T1;;chr6:34204672..34204692,+!p1@HMGA1!0.86!742.56!HMGA1;;chr22:29196547..29196563,-!p2@XBP1!0.86!245.33!XBP1;;chr3:12329358..12329393,+!p3@PPARG!0.86!16.17!PPARG;;chr8:72755987..72756002,-!p7@MSC!0.86!6.33!MSC;;chr8:48650715..48650735,-!p1@CEBPD!0.85!824.34!CEBPD;;chr3:126076242..126076257,-!p1@KLF15!0.85!7.73!KLF15;;chr17:41622834..41622883,-!p6@ETV4!0.84!7.26!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!0.83!16.17!HMGA2;;chr8:72756023..72756055,-!p6@MSC!0.83!7.26!MSC;;chr12:2986206..2986258,-!p2@FOXM1!0.82!36.32!FOXM1;;chr4:111544219..111544240,-!p1@PITX2!0.82!5.62!PITX2;;chr7:44143978..44143989,+!p2@AEBP1!0.81!10.54!AEBP1;;chr8:72756213..72756243,-!p5@MSC!0.81!7.26!MSC;;chr2:119604456..119604501,-!p2@EN1!0.81!5.39!EN1;;chr19:50432453..50432468,+!p1@ATF5!0.80!325.94!ATF5;;chr9:110252035..110252057,-!p1@KLF4!0.80!91.62!KLF4;;chr6:34204973..34204990,+!p4@HMGA1!0.78!73.34!HMGA1;;chr11:63684602..63684664,-!p1@RCOR2!0.78!10.54!RCOR2;;chr14:61116168..61116180,-!p2@SIX1!0.78!5.86!SIX1;;chr5:134369905..134369972,-!p1@PITX1!0.77!7.73!PITX1;;chr6:50786571..50786590,+!p2@TFAP2B!0.77!4.92!TFAP2B;;chr8:72756194..72756208,-!p9@MSC!0.75!4.69!MSC;;chr8:93074848..93074871,-!p3@RUNX1T1!0.75!4.69!RUNX1T1;;chr19:46800289..46800327,+!p2@HIF3A!0.75!4.69!HIF3A;;chr17:7492684..7492778,-!p2@SOX15!0.74!10.08!SOX15;;chr17:46131916..46131952,+!p7@NFE2L1!0.74!4.45!NFE2L1;;chr8:60031762..60031803,-!p3@TOX!0.73!6.56!TOX;;chr3:126076264..126076305,-!p2@KLF15!0.73!6.33!KLF15;;chr20:42295713..42295738,+!p2@MYBL2!0.72!28.35!MYBL2;;chr16:86600870..86600921,+!p2@FOXC2!0.72!4.22!FOXC2;;chr8:128748308..128748324,+!p2@MYC!0.71!129.35!MYC;;chr8:49833948..49833973,-!p2@SNAI2!0.71!29.29!SNAI2;;chr12:10875351..10875422,-!p4@CSDA!0.71!8.67!CSDA;;chr5:178368186..178368238,+!p1@ZNF454!0.71!7.97!ZNF454;;chr8:60031809..60031835,-!p4@TOX!0.71!5.39!TOX;;chr11:46299186..46299195,+!p3@CREB3L1!0.71!4.69!CREB3L1;;chr20:48807875..48807982,+!p2@CEBPB!0.70!100.52!CEBPB;;chr3:52001448..52001478,-!p2@PCBP4!0.70!63.97!PCBP4;;chr12:2986275..2986363,-!p1@FOXM1!0.70!45.22!FOXM1;;chr6:10412600..10412637,-!p1@TFAP2A!0.70!7.03!TFAP2A;;chr17:41622982..41623001,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|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.28!190.97!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.82!173.63!TWIST1;;chr6:34204921..34204939,+!p3@HMGA1!1.80!1743.35!HMGA1;;chr17:46132044..46132080,+!p4@NFE2L1!1.73!52.25!NFE2L1;;chr19:46801639..46801699,+!p1@HIF3A!1.70!49.21!HIF3A;;chr6:50786591..50786614,+!p1@TFAP2B!1.58!37.02!TFAP2B;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!148.56!CREB3L1;;chr20:42543441..42543497,+!p1@TOX2!1.48!127.94!TOX2;;chr8:72756637..72756664,-!p3@MSC!1.47!32.57!MSC;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.04!SIX1;;chr5:2751762..2751784,-!p1@IRX2!1.40!24.37!IRX2;;chr6:41562324..41562340,+!p16@FOXP4!1.38!23.20!FOXP4;;chr8:72756063..72756125,-!p1@MSC!1.33!40.54!MSC;;chr16:86544113..86544145,+!p1@FOXF1!1.32!24.60!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!1.31!60.69!TWIST2;;chr8:72756667..72756736,-!p2@MSC!1.31!30.46!MSC;;chr8:72756267..72756296,-!p4@MSC!1.29!27.18!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.27!23.67!PRRX1;;chr6:85474299..85474324,-!p1@TBX18!1.22!27.65!TBX18;;chr9:132427972..132428056,+!p1@PRRX2!1.22!20.15!PRRX2;;chr3:138665937..138665968,-!p1@FOXL2!1.18!14.29!FOXL2;;chr20:42543506..42543549,+!p2@TOX2!1.17!33.27!TOX2;;chr17:41622765..41622821,-!p2@ETV4!1.17!20.85!ETV4;;chr4:111558135..111558198,-!p2@PITX2!1.16!13.36!PITX2;;chr9:132427883..132427951,+!p2@PRRX2!1.15!13.12!PRRX2;;chr5:92918919..92918942,+!p1@NR2F1!1.12!53.89!NR2F1;;chr17:41623009..41623053,-!p4@ETV4!1.11!19.45!ETV4;;chr17:41622925..41622976,-!p3@ETV4!1.11!17.81!ETV4;;chr7:19157043..19157088,-!p2@TWIST1!1.09!28.82!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.09!19.45!TWIST2;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.08!11.01!MEF2B;;chr7:44143925..44143970,+!p1@AEBP1!1.06!234.79!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.06!17.81!CREB3L1;;chr20:55204351..55204377,+!p1@TFAP2C!1.05!13.12!TFAP2C;;chr2:19558373..19558392,-!p1@OSR1!1.04!27.88!OSR1;;chr18:52969674..52969685,-!p24@TCF4!1.01!9.14!TCF4;;chr3:138665969..138665993,-!p2@FOXL2!0.96!8.20!FOXL2;;chr3:12329397..12329433,+!p2@PPARG!0.95!18.28!PPARG;;chr19:45260775..45260838,+!p5@BCL3!0.94!10.08!BCL3;;chr6:85473156..85473210,-!p2@TBX18!0.94!9.61!TBX18;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.67!PRRX1;;chr1:119530493..119530572,-!p1@TBX15!0.93!7.50!TBX15;;chr12:85673977..85674015,+!p1@ALX1!0.93!7.50!ALX1;;chr7:28448965..28448994,+!p2@CREB5!0.92!26.95!CREB5;;chr6:1389789..1389821,+!p1@FOXF2!0.92!10.31!FOXF2;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.44!BNC1;;chr12:85673868..85673881,+!p2@ALX1!0.92!7.26!ALX1;;chr15:57511609..57511651,+!p2@TCF12!0.91!12.18!TCF12;;chr3:185826855..185826911,-!p1@ETV5!0.90!199.88!ETV5;;chr6:10415276..10415341,-!p2@TFAP2A!0.90!8.67!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!0.90!7.03!IRX2;;chr5:76383133..76383186,-!p2@ZBED3!0.89!14.29!ZBED3;;chr8:93074803..93074845,-!p1@RUNX1T1!0.89!6.80!RUNX1T1;;chr6:34204672..34204692,+!p1@HMGA1!0.86!742.56!HMGA1;;chr22:29196547..29196563,-!p2@XBP1!0.86!245.33!XBP1;;chr3:12329358..12329393,+!p3@PPARG!0.86!16.17!PPARG;;chr8:72755987..72756002,-!p7@MSC!0.86!6.33!MSC;;chr8:48650715..48650735,-!p1@CEBPD!0.85!824.34!CEBPD;;chr3:126076242..126076257,-!p1@KLF15!0.85!7.73!KLF15;;chr17:41622834..41622883,-!p6@ETV4!0.84!7.26!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!0.83!16.17!HMGA2;;chr8:72756023..72756055,-!p6@MSC!0.83!7.26!MSC;;chr12:2986206..2986258,-!p2@FOXM1!0.82!36.32!FOXM1;;chr4:111544219..111544240,-!p1@PITX2!0.82!5.62!PITX2;;chr7:44143978..44143989,+!p2@AEBP1!0.81!10.54!AEBP1;;chr8:72756213..72756243,-!p5@MSC!0.81!7.26!MSC;;chr2:119604456..119604501,-!p2@EN1!0.81!5.39!EN1;;chr19:50432453..50432468,+!p1@ATF5!0.80!325.94!ATF5;;chr9:110252035..110252057,-!p1@KLF4!0.80!91.62!KLF4;;chr6:34204973..34204990,+!p4@HMGA1!0.78!73.34!HMGA1;;chr11:63684602..63684664,-!p1@RCOR2!0.78!10.54!RCOR2;;chr14:61116168..61116180,-!p2@SIX1!0.78!5.86!SIX1;;chr5:134369905..134369972,-!p1@PITX1!0.77!7.73!PITX1;;chr6:50786571..50786590,+!p2@TFAP2B!0.77!4.92!TFAP2B;;chr8:72756194..72756208,-!p9@MSC!0.75!4.69!MSC;;chr8:93074848..93074871,-!p3@RUNX1T1!0.75!4.69!RUNX1T1;;chr19:46800289..46800327,+!p2@HIF3A!0.75!4.69!HIF3A;;chr17:7492684..7492778,-!p2@SOX15!0.74!10.08!SOX15;;chr17:46131916..46131952,+!p7@NFE2L1!0.74!4.45!NFE2L1;;chr8:60031762..60031803,-!p3@TOX!0.73!6.56!TOX;;chr3:126076264..126076305,-!p2@KLF15!0.73!6.33!KLF15;;chr20:42295713..42295738,+!p2@MYBL2!0.72!28.35!MYBL2;;chr16:86600870..86600921,+!p2@FOXC2!0.72!4.22!FOXC2;;chr8:128748308..128748324,+!p2@MYC!0.71!129.35!MYC;;chr8:49833948..49833973,-!p2@SNAI2!0.71!29.29!SNAI2;;chr12:10875351..10875422,-!p4@CSDA!0.71!8.67!CSDA;;chr5:178368186..178368238,+!p1@ZNF454!0.71!7.97!ZNF454;;chr8:60031809..60031835,-!p4@TOX!0.71!5.39!TOX;;chr11:46299186..46299195,+!p3@CREB3L1!0.71!4.69!CREB3L1;;chr20:48807875..48807982,+!p2@CEBPB!0.70!100.52!CEBPB;;chr3:52001448..52001478,-!p2@PCBP4!0.70!63.97!PCBP4;;chr12:2986275..2986363,-!p1@FOXM1!0.70!45.22!FOXM1;;chr6:10412600..10412637,-!p1@TFAP2A!0.70!7.03!TFAP2A;;chr17:41622982..41623001,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Conjunctival%252c%2520donor1.CNhs11339.11531-120A1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Conjunctival%252c%2520donor1.CNhs11339.11531-120A1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Conjunctival%252c%2520donor1.CNhs11339.11531-120A1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Conjunctival%252c%2520donor1.CNhs11339.11531-120A1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Conjunctival%252c%2520donor1.CNhs11339.11531-120A1.hg38.nobarcode.ctss.bed.gz
|id=FF:11531-120A1
|id=FF:11531-120A1
|is_a=EFO:0002091;;FF:0000061
|is_a=EFO:0002091;;FF:0000061
Line 46: Line 54:
|library_id=CNhs11339
|library_id=CNhs11339
|library_id_phase_based=2:CNhs11339
|library_id_phase_based=2:CNhs11339
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11531
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.TGACCA.11531
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11531
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.TGACCA.11531
|name=Fibroblast - Conjunctival, donor1
|name=Fibroblast - Conjunctival, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 53: Line 67:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10015,,,
|profile_srnaseq=SRhi10015,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=GTF2A1,2:1.32187276234;CEBPA,B_DDIT3:1.16946024969;EBF1:1.16145463659;bHLH_family:1.14498760795;TFAP4:1.11711191025;CRX:1.07311864325;ZIC1..3:1.06530081484;ZNF238:1.04667613541;PBX1:0.961855420039;LHX3,4:0.958957101571;HOX{A6,A7,B6,B7}:0.941586334492;NKX3-1:0.908054145098;POU2F1..3:0.881385850942;PDX1:0.859946135296;HOX{A5,B5}:0.800695831894;NR3C1:0.785838237757;GZF1:0.729331707656;TAL1_TCF{3,4,12}:0.708618389749;ZNF148:0.692617009159;GFI1:0.650511534091;NR1H4:0.635789434817;TLX1..3_NFIC{dimer}:0.575392158558;HLF:0.557322598923;NR5A1,2:0.547325134446;HES1:0.538600912554;PATZ1:0.533689209356;GFI1B:0.53325278205;RXRA_VDR{dimer}:0.503169284763;TBX4,5:0.489230920128;HAND1,2:0.467518897055;SOX17:0.456391045485;TFDP1:0.451529493594;TFCP2:0.451520124657;RXR{A,B,G}:0.445061307973;TP53:0.434271148367;TFAP2B:0.42989379397;NFY{A,B,C}:0.426072686852;TEAD1:0.421969968286;HIF1A:0.419478980752;ZNF423:0.39734662632;ESR1:0.37876348989;LEF1_TCF7_TCF7L1,2:0.369916431376;SOX5:0.369380808885;GTF2I:0.346447619377;RREB1:0.34120921946;ZNF143:0.326942730964;NANOG:0.305733961185;TFAP2{A,C}:0.283680129039;EN1,2:0.277873522327;NFE2L2:0.275870245641;HIC1:0.262029570509;PAX5:0.242702829982;YY1:0.241863316828;ZBTB6:0.232272947254;NKX2-2,8:0.231624339306;XCPE1{core}:0.227721946288;MZF1:0.201057100993;BACH2:0.200870728816;ELK1,4_GABP{A,B1}:0.192576727346;IKZF1:0.192293376146;NR6A1:0.178983803416;AHR_ARNT_ARNT2:0.14993116963;NKX2-3_NKX2-5:0.148281420264;ATF4:0.144369472111;ALX4:0.138937812618;NFE2:0.132842236402;MTF1:0.130740278798;POU1F1:0.121329366947;XBP1:0.113498537426;MYB:0.101376664508;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.101132139635;NFATC1..3:0.0989755878745;HNF4A_NR2F1,2:0.0975915604651;SRF:0.0899673894252;FOS_FOS{B,L1}_JUN{B,D}:0.0871131687306;ESRRA:0.0818709346431;AR:0.0795318589116;GLI1..3:0.0770157769246;TOPORS:0.0760303714431;PAX1,9:0.0752306357222;RORA:0.0710311076659;RFX1:0.06577076771;NFIX:0.0554448803665;SP1:0.0535814829822;MYBL2:0.0429137784047;PRRX1,2:0.0336078341759;POU3F1..4:0.0303431684531;CUX2:0.0215566646576;CREB1:0.00913351901627;FOSL2:-0.00496978623898;ONECUT1,2:-0.00837390937775;NANOG{mouse}:-0.0118738319592;ADNP_IRX_SIX_ZHX:-0.017687897787;HNF1A:-0.0179295766363;TEF:-0.0184902245581;NFIL3:-0.0316220527465;KLF4:-0.0345380575777;TBP:-0.036475359914;NRF1:-0.0474210875741;POU5F1:-0.048187735629;STAT5{A,B}:-0.055539794548;SOX{8,9,10}:-0.0617020889741;FOXO1,3,4:-0.0645163702561;FOXM1:-0.0672338141904;JUN:-0.0713760311131;CDC5L:-0.0743308530193;HOX{A4,D4}:-0.0781977332909;E2F1..5:-0.0913817824802;GCM1,2:-0.0986143392205;LMO2:-0.10566820923;TLX2:-0.111063789591;GATA6:-0.113226480171;NHLH1,2:-0.115416831379;PPARG:-0.155616250673;RUNX1..3:-0.158411138892;MAZ:-0.160921837056;MED-1{core}:-0.165361289399;STAT2,4,6:-0.170002516217;FOXA2:-0.18249182218;PAX8:-0.187242936136;MTE{core}:-0.208784528205;NFKB1_REL_RELA:-0.217051875029;T:-0.217670046027;MYOD1:-0.217836140287;IRF7:-0.219582060747;PAX3,7:-0.236872261025;REST:-0.23737868775;ATF2:-0.238345199014;SNAI1..3:-0.257552165838;MYFfamily:-0.261503838892;MEF2{A,B,C,D}:-0.280206416453;PRDM1:-0.281042031097;FOXD3:-0.303394951732;EGR1..3:-0.311172829061;AIRE:-0.339181697251;EP300:-0.346054957805;NKX2-1,4:-0.351930671779;SPZ1:-0.366847977639;POU6F1:-0.378453025713;UFEwm:-0.378915048992;BREu{core}:-0.393151397724;OCT4_SOX2{dimer}:-0.397290753437;STAT1,3:-0.400901585325;ZNF384:-0.40122091033;NFE2L1:-0.404103090151;VSX1,2:-0.40509522413;FOX{F1,F2,J1}:-0.406029824479;ALX1:-0.406438369754;FOX{I1,J2}:-0.437044427413;FOXQ1:-0.44285096242;RFX2..5_RFXANK_RFXAP:-0.452441075023;TGIF1:-0.453035005889;ETS1,2:-0.475980582073;SPI1:-0.484910470325;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.520817132946;NKX6-1,2:-0.532035608741;ZEB1:-0.535926131377;PAX6:-0.537850929406;HOXA9_MEIS1:-0.543522656288;NKX3-2:-0.55422951319;DMAP1_NCOR{1,2}_SMARC:-0.5661671016;MAFB:-0.58079610482;SOX2:-0.581321927681;SPIB:-0.587501222791;PAX4:-0.606867523017;CDX1,2,4:-0.610303132378;IRF1,2:-0.614941956815;ATF5_CREB3:-0.636058036001;ELF1,2,4:-0.644145106225;PITX1..3:-0.644770152939;ZFP161:-0.646329673655;ARID5B:-0.650299409219;HMX1:-0.700963840701;HBP1_HMGB_SSRP1_UBTF:-0.702503320397;DBP:-0.719174796614;GATA4:-0.720154257984;EVI1:-0.732756186031;FOXL1:-0.741868048924;BPTF:-0.752947216084;FOX{D1,D2}:-0.856429131266;PAX2:-0.861640116261;ATF6:-0.867416775125;FOXP3:-0.869447665249;SMAD1..7,9:-0.932072366762;RBPJ:-0.962300981305;HSF1,2:-1.02310511826;HMGA1,2:-1.07269498558;FOXP1:-1.17912599593;ZBTB16:-1.20277825238;SREBF1,2:-1.37368014281;FOXN1:-1.38648744334;IKZF2:-1.67171466636
|top_motifs=GTF2A1,2:1.32187276234;CEBPA,B_DDIT3:1.16946024969;EBF1:1.16145463659;bHLH_family:1.14498760795;TFAP4:1.11711191025;CRX:1.07311864325;ZIC1..3:1.06530081484;ZNF238:1.04667613541;PBX1:0.961855420039;LHX3,4:0.958957101571;HOX{A6,A7,B6,B7}:0.941586334492;NKX3-1:0.908054145098;POU2F1..3:0.881385850942;PDX1:0.859946135296;HOX{A5,B5}:0.800695831894;NR3C1:0.785838237757;GZF1:0.729331707656;TAL1_TCF{3,4,12}:0.708618389749;ZNF148:0.692617009159;GFI1:0.650511534091;NR1H4:0.635789434817;TLX1..3_NFIC{dimer}:0.575392158558;HLF:0.557322598923;NR5A1,2:0.547325134446;HES1:0.538600912554;PATZ1:0.533689209356;GFI1B:0.53325278205;RXRA_VDR{dimer}:0.503169284763;TBX4,5:0.489230920128;HAND1,2:0.467518897055;SOX17:0.456391045485;TFDP1:0.451529493594;TFCP2:0.451520124657;RXR{A,B,G}:0.445061307973;TP53:0.434271148367;TFAP2B:0.42989379397;NFY{A,B,C}:0.426072686852;TEAD1:0.421969968286;HIF1A:0.419478980752;ZNF423:0.39734662632;ESR1:0.37876348989;LEF1_TCF7_TCF7L1,2:0.369916431376;SOX5:0.369380808885;GTF2I:0.346447619377;RREB1:0.34120921946;ZNF143:0.326942730964;NANOG:0.305733961185;TFAP2{A,C}:0.283680129039;EN1,2:0.277873522327;NFE2L2:0.275870245641;HIC1:0.262029570509;PAX5:0.242702829982;YY1:0.241863316828;ZBTB6:0.232272947254;NKX2-2,8:0.231624339306;XCPE1{core}:0.227721946288;MZF1:0.201057100993;BACH2:0.200870728816;ELK1,4_GABP{A,B1}:0.192576727346;IKZF1:0.192293376146;NR6A1:0.178983803416;AHR_ARNT_ARNT2:0.14993116963;NKX2-3_NKX2-5:0.148281420264;ATF4:0.144369472111;ALX4:0.138937812618;NFE2:0.132842236402;MTF1:0.130740278798;POU1F1:0.121329366947;XBP1:0.113498537426;MYB:0.101376664508;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.101132139635;NFATC1..3:0.0989755878745;HNF4A_NR2F1,2:0.0975915604651;SRF:0.0899673894252;FOS_FOS{B,L1}_JUN{B,D}:0.0871131687306;ESRRA:0.0818709346431;AR:0.0795318589116;GLI1..3:0.0770157769246;TOPORS:0.0760303714431;PAX1,9:0.0752306357222;RORA:0.0710311076659;RFX1:0.06577076771;NFIX:0.0554448803665;SP1:0.0535814829822;MYBL2:0.0429137784047;PRRX1,2:0.0336078341759;POU3F1..4:0.0303431684531;CUX2:0.0215566646576;CREB1:0.00913351901627;FOSL2:-0.00496978623898;ONECUT1,2:-0.00837390937775;NANOG{mouse}:-0.0118738319592;ADNP_IRX_SIX_ZHX:-0.017687897787;HNF1A:-0.0179295766363;TEF:-0.0184902245581;NFIL3:-0.0316220527465;KLF4:-0.0345380575777;TBP:-0.036475359914;NRF1:-0.0474210875741;POU5F1:-0.048187735629;STAT5{A,B}:-0.055539794548;SOX{8,9,10}:-0.0617020889741;FOXO1,3,4:-0.0645163702561;FOXM1:-0.0672338141904;JUN:-0.0713760311131;CDC5L:-0.0743308530193;HOX{A4,D4}:-0.0781977332909;E2F1..5:-0.0913817824802;GCM1,2:-0.0986143392205;LMO2:-0.10566820923;TLX2:-0.111063789591;GATA6:-0.113226480171;NHLH1,2:-0.115416831379;PPARG:-0.155616250673;RUNX1..3:-0.158411138892;MAZ:-0.160921837056;MED-1{core}:-0.165361289399;STAT2,4,6:-0.170002516217;FOXA2:-0.18249182218;PAX8:-0.187242936136;MTE{core}:-0.208784528205;NFKB1_REL_RELA:-0.217051875029;T:-0.217670046027;MYOD1:-0.217836140287;IRF7:-0.219582060747;PAX3,7:-0.236872261025;REST:-0.23737868775;ATF2:-0.238345199014;SNAI1..3:-0.257552165838;MYFfamily:-0.261503838892;MEF2{A,B,C,D}:-0.280206416453;PRDM1:-0.281042031097;FOXD3:-0.303394951732;EGR1..3:-0.311172829061;AIRE:-0.339181697251;EP300:-0.346054957805;NKX2-1,4:-0.351930671779;SPZ1:-0.366847977639;POU6F1:-0.378453025713;UFEwm:-0.378915048992;BREu{core}:-0.393151397724;OCT4_SOX2{dimer}:-0.397290753437;STAT1,3:-0.400901585325;ZNF384:-0.40122091033;NFE2L1:-0.404103090151;VSX1,2:-0.40509522413;FOX{F1,F2,J1}:-0.406029824479;ALX1:-0.406438369754;FOX{I1,J2}:-0.437044427413;FOXQ1:-0.44285096242;RFX2..5_RFXANK_RFXAP:-0.452441075023;TGIF1:-0.453035005889;ETS1,2:-0.475980582073;SPI1:-0.484910470325;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.520817132946;NKX6-1,2:-0.532035608741;ZEB1:-0.535926131377;PAX6:-0.537850929406;HOXA9_MEIS1:-0.543522656288;NKX3-2:-0.55422951319;DMAP1_NCOR{1,2}_SMARC:-0.5661671016;MAFB:-0.58079610482;SOX2:-0.581321927681;SPIB:-0.587501222791;PAX4:-0.606867523017;CDX1,2,4:-0.610303132378;IRF1,2:-0.614941956815;ATF5_CREB3:-0.636058036001;ELF1,2,4:-0.644145106225;PITX1..3:-0.644770152939;ZFP161:-0.646329673655;ARID5B:-0.650299409219;HMX1:-0.700963840701;HBP1_HMGB_SSRP1_UBTF:-0.702503320397;DBP:-0.719174796614;GATA4:-0.720154257984;EVI1:-0.732756186031;FOXL1:-0.741868048924;BPTF:-0.752947216084;FOX{D1,D2}:-0.856429131266;PAX2:-0.861640116261;ATF6:-0.867416775125;FOXP3:-0.869447665249;SMAD1..7,9:-0.932072366762;RBPJ:-0.962300981305;HSF1,2:-1.02310511826;HMGA1,2:-1.07269498558;FOXP1:-1.17912599593;ZBTB16:-1.20277825238;SREBF1,2:-1.37368014281;FOXN1:-1.38648744334;IKZF2:-1.67171466636
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11531-120A1;search_select_hide=table117:FF:11531-120A1
}}
}}

Latest revision as of 18:07, 4 June 2020

Name:Fibroblast - Conjunctival, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11339
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC6575
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005510
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11339 CAGE DRX008252 DRR009124
Accession ID Hg19

Library idBAMCTSS
CNhs11339 DRZ000549 DRZ001934
Accession ID Hg38

Library idBAMCTSS
CNhs11339 DRZ011899 DRZ013284
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005510
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.TGACCA sRNA-Seq DRX037249 DRR041615
Accession ID Hg19

Library idBAMCTSS
SRhi10015.TGACCA DRZ007257


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.167
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.04
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0587
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.328
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.207
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0914
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.167
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0474
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.018
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0914
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.618
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00337
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.421
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0914
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0914
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.036
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0914
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0914
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0914
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11339

Jaspar motifP-value
MA0002.20.96
MA0003.10.288
MA0004.10.344
MA0006.10.497
MA0007.10.235
MA0009.10.147
MA0014.10.859
MA0017.10.956
MA0018.20.695
MA0019.10.676
MA0024.10.671
MA0025.10.85
MA0027.10.488
MA0028.10.284
MA0029.10.485
MA0030.10.792
MA0031.10.0953
MA0035.20.136
MA0038.10.00597
MA0039.20.804
MA0040.10.431
MA0041.10.273
MA0042.10.591
MA0043.10.707
MA0046.10.0686
MA0047.20.931
MA0048.10.181
MA0050.10.00491
MA0051.10.0793
MA0052.10.981
MA0055.13.32197e-4
MA0057.10.518
MA0058.10.926
MA0059.10.768
MA0060.14.34158e-6
MA0061.10.309
MA0062.20.26
MA0065.20.104
MA0066.10.997
MA0067.10.0167
MA0068.10.68
MA0069.10.947
MA0070.10.0323
MA0071.10.472
MA0072.10.737
MA0073.10.894
MA0074.10.426
MA0076.10.542
MA0077.10.321
MA0078.10.796
MA0079.20.694
MA0080.21.4577e-6
MA0081.10.191
MA0083.10.246
MA0084.10.158
MA0087.10.91
MA0088.10.29
MA0090.10.225
MA0091.10.205
MA0092.10.99
MA0093.10.537
MA0099.21.02781e-4
MA0100.10.917
MA0101.10.659
MA0102.20.333
MA0103.10.397
MA0104.20.619
MA0105.10.487
MA0106.10.149
MA0107.10.554
MA0108.20.0753
MA0111.10.174
MA0112.20.825
MA0113.10.0194
MA0114.10.24
MA0115.10.875
MA0116.10.744
MA0117.10.214
MA0119.10.466
MA0122.10.231
MA0124.10.0972
MA0125.10.534
MA0131.10.967
MA0135.10.0456
MA0136.11.98379e-4
MA0137.20.183
MA0138.20.963
MA0139.10.643
MA0140.10.0839
MA0141.10.474
MA0142.10.344
MA0143.10.268
MA0144.10.28
MA0145.10.513
MA0146.10.0645
MA0147.10.387
MA0148.10.901
MA0149.10.967
MA0150.10.779
MA0152.10.291
MA0153.10.317
MA0154.10.93
MA0155.10.0542
MA0156.10.0252
MA0157.10.299
MA0159.10.863
MA0160.10.852
MA0162.10.106
MA0163.10.173
MA0164.10.774
MA0258.10.896
MA0259.10.606



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11339

Novel motifP-value
10.289
100.317
1000.753
1010.379
1020.375
1030.219
1040.118
1050.0276
1060.993
1070.207
1080.142
1090.0461
110.18
1100.0976
1110.421
1120.134
1130.0564
1140.319
1150.271
1160.147
1170.786
1180.768
1190.801
120.56
1200.906
1210.943
1220.424
1230.00409
1240.917
1250.777
1260.707
1270.787
1280.417
1290.834
130.996
1300.0504
1310.389
1320.572
1330.297
1340.171
1350.605
1360.885
1370.0616
1380.377
1390.168
140.678
1400.797
1410.264
1420.236
1430.761
1440.585
1450.482
1460.0386
1470.547
1480.671
1490.61
150.756
1500.324
1510.888
1520.0768
1530.623
1540.0159
1550.215
1560.2
1570.356
1580.0905
1590.512
160.788
1600.106
1610.511
1620.0241
1630.933
1640.888
1650.117
1660.574
1670.275
1680.385
1690.222
170.785
180.00426
190.126
20.721
200.966
210.675
220.242
230.55
240.662
250.193
260.407
270.973
280.0518
290.333
30.497
300.0518
310.556
320.0665
330.0584
340.132
350.717
360.78
370.272
380.75
390.479
40.573
400.105
410.346
420.905
430.449
440.0502
450.169
460.757
470.594
480.371
490.538
50.326
500.179
510.823
520.979
530.163
540.621
550.315
560.282
570.815
580.0899
590.185
60.716
600.887
610.392
620.061
630.575
640.117
650.275
660.017
670.387
680.0603
690.386
70.766
700.413
710.716
720.779
730.0186
740.729
750.933
760.517
770.187
780.289
790.554
80.347
800.494
810.752
820.23
830.477
840.301
850.965
860.702
870.107
880.143
890.725
90.148
900.0249
910.624
920.909
930.934
940.397
950.357
960.936
970.338
980.881
990.00395



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11339


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002550 (fibroblast of the conjuctiva)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000061 (human fibroblast of conjuctivia sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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