FFCP PHASE1:Mm9::chrX:147248180..147248255,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:147248180..147248255,-
|short_description=p2@LOC675577,p2@Maged2
|description=CAGE_peak_2_at_LOC675577_5end,CAGE_peak_2_at_Maged2_5end
|association_with_tr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=675577,80884 | |EntrezGene=675577,80884 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1662 | |||
|TSSclassifier=NA | |||
|UniProt=Q9ER67 | |UniProt=Q9ER67 | ||
|association_with_transcript=0bp_to_ENSMUST00000112697,ENSMUST00000112700,NM_001199246,uc009uos.2_5end | |||
|cluster_id=chrX:147248180..147248255,- | |||
|description=CAGE_peak_2_at_LOC675577_5end,CAGE_peak_2_at_Maged2_5end | |||
|id=chrX:147248180..147248255,- | |||
|ontology_enrichment_celltype=CL:0000055!1.79e-15!50;CL:0000221!3.98e-15!44;CL:0000133!3.98e-15!44;CL:0002319!1.63e-14!43;CL:0000393!2.62e-13!39;CL:0000211!2.62e-13!39;CL:0000117!1.86e-12!23;CL:0000337!1.86e-12!23;CL:0000540!1.26e-11!33;CL:0000047!1.26e-11!33;CL:0000031!1.26e-11!33;CL:0000404!1.26e-11!33;CL:0002321!1.06e-07!70;CL:0000220!1.06e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.73e-15,44;CL:0000133,3.73e-15,44;CL:0002319,1.53e-14,43;CL:0000393,2.48e-13,39;CL:0000211,2.48e-13,39;CL:0000117,1.76e-12,23;CL:0000337,1.76e-12,23;CL:0000540,1.20e-11,33;CL:0000047,1.20e-11,33;CL:0000031,1.20e-11,33;CL:0000404,1.20e-11,33;CL:0002321,8.89e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.10e-13!73;UBERON:0005743!1.10e-13!73;UBERON:0000073!3.89e-13!75;UBERON:0001016!3.89e-13!75;UBERON:0004121!1.77e-12!102;UBERON:0000924!1.77e-12!102;UBERON:0006601!1.77e-12!102;UBERON:0002346!3.05e-11!71;UBERON:0003075!3.05e-11!71;UBERON:0007284!3.05e-11!71;UBERON:0001049!1.17e-09!52;UBERON:0005068!1.17e-09!52;UBERON:0006241!1.17e-09!52;UBERON:0007135!1.17e-09!52;UBERON:0000033!4.02e-08!63;UBERON:0000025!7.13e-08!114;UBERON:0002616!8.63e-08!49;UBERON:0000955!1.45e-07!50;UBERON:0006238!1.45e-07!50;UBERON:0003056!1.89e-07!49;UBERON:0004111!3.05e-07!122;UBERON:0002780!5.32e-07!39;UBERON:0001890!5.32e-07!39;UBERON:0006240!5.32e-07!39;UBERON:0003080!5.68e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,4.12e-16,92;UBERON:0001017,1.03e-13,73;UBERON:0001016,3.68e-13,75;UBERON:0004121,3.54e-11,95;UBERON:0000924,3.54e-11,95;UBERON:0006601,3.54e-11,95;UBERON:0000073,4.36e-10,54;UBERON:0002346,4.76e-10,64;UBERON:0003075,4.76e-10,64;UBERON:0007284,4.76e-10,64;UBERON:0001049,1.13e-09,52;UBERON:0005068,1.13e-09,52;UBERON:0006241,1.13e-09,52;UBERON:0007135,1.13e-09,52;UBERON:0010371,8.06e-09,73;UBERON:0000025,6.47e-08,114;UBERON:0003056,1.83e-07,49;UBERON:0004111,2.79e-07,122;UBERON:0002616,2.94e-07,46;UBERON:0000955,4.92e-07,47;UBERON:0006238,4.92e-07,47;UBERON:0002780,5.18e-07,39;UBERON:0001890,5.18e-07,39;UBERON:0006240,5.18e-07,39;UBERON:0003080,5.53e-07,40 | |||
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| ||
|short_description=p2@LOC675577,p2@Maged2 | |||
}} | }} |
Latest revision as of 16:30, 1 October 2015
Short description: | p2@LOC675577, p2@Maged2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LOC675577_5end, CAGE_peak_2_at_Maged2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1662 |
Association with transcript: | 0bp_to_ENSMUST00000112697, ENSMUST00000112700, NM_001199246, uc009uos.2_5end |
EntrezGene: | 675577,80884 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.73e-15 | 44 |
neurectodermal cell | 3.73e-15 | 44 |
neural cell | 1.53e-14 | 43 |
electrically responsive cell | 2.48e-13 | 39 |
electrically active cell | 2.48e-13 | 39 |
CNS neuron (sensu Vertebrata) | 1.76e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.76e-12 | 23 |
neuron | 1.20e-11 | 33 |
neuronal stem cell | 1.20e-11 | 33 |
neuroblast | 1.20e-11 | 33 |
electrically signaling cell | 1.20e-11 | 33 |
embryonic cell | 8.89e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 4.12e-16 | 92 |
central nervous system | 1.03e-13 | 73 |
nervous system | 3.68e-13 | 75 |
ectoderm-derived structure | 3.54e-11 | 95 |
ectoderm | 3.54e-11 | 95 |
presumptive ectoderm | 3.54e-11 | 95 |
regional part of nervous system | 4.36e-10 | 54 |
neurectoderm | 4.76e-10 | 64 |
neural plate | 4.76e-10 | 64 |
presumptive neural plate | 4.76e-10 | 64 |
neural tube | 1.13e-09 | 52 |
neural rod | 1.13e-09 | 52 |
future spinal cord | 1.13e-09 | 52 |
neural keel | 1.13e-09 | 52 |
ecto-epithelium | 8.06e-09 | 73 |
tube | 6.47e-08 | 114 |
pre-chordal neural plate | 1.83e-07 | 49 |
anatomical conduit | 2.79e-07 | 122 |
regional part of brain | 2.94e-07 | 46 |
brain | 4.92e-07 | 47 |
future brain | 4.92e-07 | 47 |
regional part of forebrain | 5.18e-07 | 39 |
forebrain | 5.18e-07 | 39 |
future forebrain | 5.18e-07 | 39 |
anterior neural tube | 5.53e-07 | 40 |