UBERON:0000179: Difference between revisions

Latest revision as of 17:07, 12 September 2014

Name:	haemolymphatic fluid
Namespace:	FANTOM
Definition:	"Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." []
Synonyms:	"blood or blood analog" RELATED [] "haematological system portion of organism substance" EXACT [OBOL:automatic] "haemopoietic system portion of organism substance" EXACT [OBOL:automatic] "hematopoietic system portion of organism substance" EXACT [OBOL:automatic] "organa haemopoietica portion of organism substance" EXACT [OBOL:automatic] "portion of organism substance of haematological system" EXACT [OBOL:automatic] "portion of organism substance of haemopoietic system" EXACT [OBOL:automatic] "portion of organism substance of hematopoietic system" EXACT [OBOL:automatic] "portion of organism substance of organa haemopoietica" EXACT [OBOL:automatic]
Created by:	cjm
Creation date:	2009-04-08T04:38:19Z

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0006314(bodily fluid)
part_of:	UBERON:0002193(hemolymphoid system)

Children

is a:	UBERON:0000178 (blood)
part of:	CL:0000080 (circulating cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

10053-101G8 (blood, adult, pool1)
10449-106F8 (cord blood derived cell line:COBL-a untreated)
10452-106G2 (cord blood derived cell line:COBL-a 24h infection(-C))
10453-106G3 (cord blood derived cell line:COBL-a 24h infection)
11231-116C7 (Peripheral Blood Mononuclear Cells, donor1)
11312-117C7 (Peripheral Blood Mononuclear Cells, donor2)
11388-118C2 (Peripheral Blood Mononuclear Cells, donor3)
12152-128G1
12153-128G2
12154-128G3

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000179 (haemolymphatic fluid), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
2.41e-121	FFCP PHASE2:Hg19::chr1:205236716..205236728,+	p13@TMCC2
2.41e-121	FFCP PHASE1:Hg19::chr1:205236716..205236728,+	p13@TMCC2
2.31e-117	FFCP PHASE1:Hg19::chr4:74847473..74847482,-	p@chr4:74847473..74847482, -
2.31e-117	FFCP PHASE2:Hg19::chr14:75444134..75444136,-	p@chr14:75444134..75444136, -
2.31e-117	FFCP PHASE2:Hg19::chr20:54933899..54933911,+	p7@FAM210B
2.31e-117	FFCP PHASE2:Hg19::chr9:38090057..38090092,+	p@chr9:38090057..38090092, +
2.31e-117	FFCP PHASE2:Hg19::chr11:125491251..125491253,-	p@chr11:125491251..125491253, -
2.31e-117	FFCP PHASE1:Hg19::chr9:38090057..38090092,+	p@chr9:38090057..38090092, +
2.31e-117	FFCP PHASE1:Hg19::chr16:31539534..31539538,+	p4@AHSP
2.31e-117	FFCP PHASE2:Hg19::chr2:192318775..192318777,-	p@chr2:192318775..192318777, -
2.31e-117	FFCP PHASE2:Hg19::chr2:127434629..127434640,+	p@chr2:127434629..127434640, +
2.31e-117	FFCP PHASE1:Hg19::chr11:118962235..118962238,+	p5@HMBS
2.31e-117	FFCP PHASE1:Hg19::chr12:111678218..111678221,+	p@chr12:111678218..111678221, +
2.31e-117	FFCP PHASE1:Hg19::chr11:125491251..125491253,-	p@chr11:125491251..125491253, -
2.31e-117	FFCP PHASE1:Hg19::chr16:29810067..29810071,+	p@chr16:29810067..29810071, +
2.31e-117	FFCP PHASE1:Hg19::chr7:44973137..44973140,-	p@chr7:44973137..44973140, -
2.31e-117	FFCP PHASE1:Hg19::chr14:81627978..81627994,-	p@chr14:81627978..81627994, -
2.31e-117	FFCP PHASE1:Hg19::chr14:75444134..75444136,-	p@chr14:75444134..75444136, -
2.31e-117	FFCP PHASE2:Hg19::chr11:118962235..118962238,+	p5@HMBS
2.31e-117	FFCP PHASE1:Hg19::chr20:54933899..54933911,+	p7@FAM210B
2.31e-117	FFCP PHASE2:Hg19::chr12:111678218..111678221,+	p@chr12:111678218..111678221, +
2.31e-117	FFCP PHASE1:Hg19::chr14:65501285..65501318,+	p@chr14:65501285..65501318, +
2.31e-117	FFCP PHASE2:Hg19::chr14:65501285..65501318,+	p@chr14:65501285..65501318, +
2.31e-117	FFCP PHASE2:Hg19::chr16:31539534..31539538,+	p4@AHSP
2.31e-117	FFCP PHASE2:Hg19::chr7:44973137..44973140,-	p@chr7:44973137..44973140, -
2.31e-117	FFCP PHASE2:Hg19::chr11:61044581..61044587,-	p@chr11:61044581..61044587, -
2.31e-117	FFCP PHASE1:Hg19::chr11:61044581..61044587,-	p@chr11:61044581..61044587, -
2.31e-117	FFCP PHASE2:Hg19::chr4:74847473..74847482,-	p@chr4:74847473..74847482, -
2.31e-117	FFCP PHASE1:Hg19::chr2:192318775..192318777,-	p@chr2:192318775..192318777, -
2.31e-117	FFCP PHASE1:Hg19::chr12:829787..829796,-	p@chr12:829787..829796, -
2.31e-117	FFCP PHASE2:Hg19::chr17:42336860..42336865,-	p@chr17:42336860..42336865, -
2.31e-117	FFCP PHASE2:Hg19::chr12:829787..829796,-	p@chr12:829787..829796, -
2.31e-117	FFCP PHASE2:Hg19::chr16:29810067..29810071,+	p@chr16:29810067..29810071, +
2.31e-117	FFCP PHASE1:Hg19::chr2:127434629..127434640,+	p@chr2:127434629..127434640, +
2.31e-117	FFCP PHASE1:Hg19::chr17:42336860..42336865,-	p@chr17:42336860..42336865, -
2.31e-117	FFCP PHASE2:Hg19::chr14:81627978..81627994,-	p@chr14:81627978..81627994, -
8.26e-109	FFCP PHASE2:Hg19::chr6:148938884..148938891,+	p@chr6:148938884..148938891, +
8.26e-109	FFCP PHASE1:Hg19::chr6:148938884..148938891,+	p@chr6:148938884..148938891, +
8.26e-109	FFCP PHASE1:Hg19::chr2:192701558..192701565,-	p@chr2:192701558..192701565, -
8.26e-109	FFCP PHASE2:Hg19::chr2:192701558..192701565,-	p@chr2:192701558..192701565, -
8.23e-106	FFCP PHASE2:Hg19::chr5:95843224..95843228,-	p@chr5:95843224..95843228, -
8.23e-106	FFCP PHASE1:Hg19::chr7:30950369..30950387,+	p@chr7:30950369..30950387, +
8.23e-106	FFCP PHASE1:Hg19::chr6:156352553..156352562,-	p@chr6:156352553..156352562, -
8.23e-106	FFCP PHASE2:Hg19::chr12:30576643..30576644,-	p@chr12:30576643..30576644, -
8.23e-106	FFCP PHASE1:Hg19::chr5:95843224..95843228,-	p@chr5:95843224..95843228, -
8.23e-106	FFCP PHASE2:Hg19::chr6:156352553..156352562,-	p@chr6:156352553..156352562, -
8.23e-106	FFCP PHASE2:Hg19::chr11:76367785..76367794,-	p5@ENST00000531511
8.23e-106	FFCP PHASE1:Hg19::chr11:76367785..76367794,-	p5@ENST00000531511
8.23e-106	FFCP PHASE1:Hg19::chr3:142671745..142671768,-	p@chr3:142671745..142671768, -
8.23e-106	FFCP PHASE1:Hg19::chr17:42335778..42335781,-	p4@SLC4A1
8.23e-106	FFCP PHASE2:Hg19::chr1:154912672..154912683,+	p@chr1:154912672..154912683, +
8.23e-106	FFCP PHASE2:Hg19::chr11:76367970..76367987,-	p2@ENST00000531511
8.23e-106	FFCP PHASE2:Hg19::chr11:5246742..5246755,+	p7@CU675538
8.23e-106	FFCP PHASE1:Hg19::chr10:46076393..46076404,-	p@chr10:46076393..46076404, -
8.23e-106	FFCP PHASE1:Hg19::chr10:8724326..8724327,-	p@chr10:8724326..8724327, -
8.23e-106	FFCP PHASE1:Hg19::chr2:23680232..23680238,-	p@chr2:23680232..23680238, -
8.23e-106	FFCP PHASE2:Hg19::chr2:127434578..127434589,+	p@chr2:127434578..127434589, +
8.23e-106	FFCP PHASE1:Hg19::chr1:154912672..154912683,+	p@chr1:154912672..154912683, +
8.23e-106	FFCP PHASE2:Hg19::chr8:21861540..21861544,+	p@chr8:21861540..21861544, +
8.23e-106	FFCP PHASE2:Hg19::chr10:8724326..8724327,-	p@chr10:8724326..8724327, -
8.23e-106	FFCP PHASE1:Hg19::chr11:5246715..5246726,+	p8@CU675538
8.23e-106	FFCP PHASE2:Hg19::chr3:142671745..142671768,-	p@chr3:142671745..142671768, -
8.23e-106	FFCP PHASE1:Hg19::chr11:76367970..76367987,-	p2@ENST00000531511
8.23e-106	FFCP PHASE2:Hg19::chr12:938316..938322,+	p@chr12:938316..938322, +
8.23e-106	FFCP PHASE2:Hg19::chr10:46076393..46076404,-	p@chr10:46076393..46076404, -
8.23e-106	FFCP PHASE2:Hg19::chr1:161137023..161137027,+	p@chr1:161137023..161137027, +
8.23e-106	FFCP PHASE2:Hg19::chr11:5246715..5246726,+	p8@CU675538
8.23e-106	FFCP PHASE2:Hg19::chr17:42337173..42337177,-	p@chr17:42337173..42337177, -
8.23e-106	FFCP PHASE1:Hg19::chr11:5246742..5246755,+	p7@CU675538
8.23e-106	FFCP PHASE1:Hg19::chr8:21861540..21861544,+	p@chr8:21861540..21861544, +
8.23e-106	FFCP PHASE1:Hg19::chr2:127434578..127434589,+	p@chr2:127434578..127434589, +
8.23e-106	FFCP PHASE1:Hg19::chr1:161137023..161137027,+	p@chr1:161137023..161137027, +
8.23e-106	FFCP PHASE1:Hg19::chr12:30576643..30576644,-	p@chr12:30576643..30576644, -
8.23e-106	FFCP PHASE2:Hg19::chr17:42335778..42335781,-	p4@SLC4A1
8.23e-106	FFCP PHASE2:Hg19::chr2:23680232..23680238,-	p@chr2:23680232..23680238, -
8.23e-106	FFCP PHASE1:Hg19::chr12:938316..938322,+	p@chr12:938316..938322, +
8.23e-106	FFCP PHASE1:Hg19::chr17:42337173..42337177,-	p@chr17:42337173..42337177, -
8.23e-106	FFCP PHASE2:Hg19::chr7:30950369..30950387,+	p@chr7:30950369..30950387, +
9.3e-106	FFCP PHASE2:Hg19::chr7:18520409..18520411,-	p@chr7:18520409..18520411, -
9.3e-106	FFCP PHASE2:Hg19::chr3:39430391..39430424,+	p@chr3:39430391..39430424, +
9.3e-106	FFCP PHASE2:Hg19::chr11:235547..235556,-	p@chr11:235547..235556, -
9.3e-106	FFCP PHASE1:Hg19::chr3:24179318..24179327,+	p@chr3:24179318..24179327, +
9.3e-106	FFCP PHASE2:Hg19::chr3:24179318..24179327,+	p@chr3:24179318..24179327, +
9.3e-106	FFCP PHASE2:Hg19::chr19:17146840..17146843,-	p@chr19:17146840..17146843, -
9.3e-106	FFCP PHASE1:Hg19::chr11:235547..235556,-	p@chr11:235547..235556, -
9.3e-106	FFCP PHASE1:Hg19::chr7:18520409..18520411,-	p@chr7:18520409..18520411, -
9.3e-106	FFCP PHASE1:Hg19::chr3:39430391..39430424,+	p@chr3:39430391..39430424, +
9.3e-106	FFCP PHASE1:Hg19::chr19:17146840..17146843,-	p@chr19:17146840..17146843, -
1.05e-105	FFCP PHASE1:Hg19::chr3:151067996..151068011,-	p@chr3:151067996..151068011, -
1.05e-105	FFCP PHASE1:Hg19::chr13:59545633..59545635,-	p@chr13:59545633..59545635, -
1.05e-105	FFCP PHASE2:Hg19::chr3:151067996..151068011,-	p@chr3:151067996..151068011, -
1.05e-105	FFCP PHASE2:Hg19::chr13:59545633..59545635,-	p@chr13:59545633..59545635, -
1.34e-105	FFCP PHASE2:Hg19::chr4:99783676..99783681,-	p@chr4:99783676..99783681, -
1.34e-105	FFCP PHASE1:Hg19::chr4:99783676..99783681,-	p@chr4:99783676..99783681, -
1.87e-104	FFCP PHASE1:Hg19::chr4:52905409..52905410,-	p@chr4:52905409..52905410, -
1.87e-104	FFCP PHASE1:Hg19::chr8:21927844..21927847,+	p@chr8:21927844..21927847, +
1.87e-104	FFCP PHASE2:Hg19::chr1:206320318..206320322,+	p8@CTSE
1.87e-104	FFCP PHASE2:Hg19::chr4:171855577..171855579,-	p@chr4:171855577..171855579, -
1.87e-104	FFCP PHASE1:Hg19::chr1:206320318..206320322,+	p8@CTSE
1.87e-104	FFCP PHASE1:Hg19::chr1:17803417..17803419,-	p@chr1:17803417..17803419, -

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{UBERON
-|id=UBERON:0000179
+|alt_id=
-|name=haemolymphatic fluid
-|namespace=
-|def="Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." []
-|xref=
-|is_a=UBERON:0000463
-|synonym="blood or blood analog" RELATED [];;"haematological system portion of organism substance" EXACT [OBOL:automatic];;"haemopoietic system portion of organism substance" EXACT [OBOL:automatic];;"hematopoietic system portion of organism substance" EXACT [OBOL:automatic];;"organa haemopoietica portion of organism substance" EXACT [OBOL:automatic];;"portion of organism substance of haematological system" EXACT [OBOL:automatic];;"portion of organism substance of haemopoietic system" EXACT [OBOL:automatic];;"portion of organism substance of hematopoietic system" EXACT [OBOL:automatic];;"portion of organism substance of organa haemopoietica" EXACT [OBOL:automatic]
 |comment=
-|alt_id=
-|disjoint_from=
-|union_of=
 |created_by=cjm
-|obo_creation_date=2009-04-08T04:38:19Z
+|def="Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." []
-|subset=
-|adjacent_to=
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=UBERON:0000179
+|is_a=UBERON:0006314
+|is_obsolete=
 |located_in=
-|part_of=UBERON:0002390
+|name=haemolymphatic fluid
-|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+|namespace=FANTOM
+|obo_creation_date=2009-04-08T04:38:19Z
+|part_of=UBERON:0002193
+|preceded_by=
+|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+|subset=
+|synonym="blood or blood analog" RELATED [];;"haematological system portion of organism substance" EXACT [OBOL:automatic];;"haemopoietic system portion of organism substance" EXACT [OBOL:automatic];;"hematopoietic system portion of organism substance" EXACT [OBOL:automatic];;"organa haemopoietica portion of organism substance" EXACT [OBOL:automatic];;"portion of organism substance of haematological system" EXACT [OBOL:automatic];;"portion of organism substance of haemopoietic system" EXACT [OBOL:automatic];;"portion of organism substance of hematopoietic system" EXACT [OBOL:automatic];;"portion of organism substance of organa haemopoietica" EXACT [OBOL:automatic]
+|union_of=
+|xref=
 }}

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UBERON:0000179: Difference between revisions

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Latest revision as of 17:07, 12 September 2014

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