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{{UBERON
{{UBERON
|id=UBERON:0001048
|alt_id=UBERON:FBbt_00005495-FMA_86589-XAO_0003043
|name=primordium
|namespace=
|def="Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium]
|xref=AEO:0000171;;BTO:0001886;;EFO:0001652;;EHDAA2:0003171;;FBbt:00005495;;FMA:86589;;MAT:0000482;;ncithesaurus:Primordium;;XAO:0003043
|is_a=UBERON:0005423
|synonym="bud" RELATED [];;"placode" RELATED [FBbt:00005495];;"rudiment" RELATED []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FBbt_00005495-FMA_86589-XAO_0003043
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001048
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=primordium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000468
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="bud" RELATED [];;"placode" RELATED [FBbt:00005495];;"rudiment" RELATED []
|union_of=
|xref=AEO:0000171;;BTO:0001886;;EFO:0001652;;EHDAA2:0003171;;FBbt:00005495;;FMA:86589;;MAT:0000482;;ncithesaurus:Primordium;;XAO:0003043
}}
}}

Latest revision as of 17:15, 12 September 2014

Name:primordium
Namespace:FANTOM
Definition:"Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium]
Xrefs:
links:

AEO:0000171
BTO:0001886
EFO:0001652
EHDAA2:0003171
FBbt:00005495
FMA:86589
MAT:0000482
ncithesaurus:Primordium

XAO:0003043
Synonyms: "bud" RELATED []
"placode" RELATED [FBbt:00005495]
"rudiment" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FBbt_00005495-FMA_86589-XAO_0003043
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0000468(multi-cellular organism)



Children

is a:UBERON:0003084 (heart primordium),UBERON:0003091 (thyroid primordium),UBERON:0003921 (pancreas primordium),UBERON:0005085 (ectodermal placode),UBERON:0005427 (corneal primordium),UBERON:0005562 (thymus primordium),UBERON:0005564 (gonad primordium),UBERON:0005597 (lung primordium),UBERON:0005732 (limb/fin field),UBERON:0006215 (rhombic lip),UBERON:0006242 (gall bladder primordium),UBERON:0006256 (knee joint primordium),UBERON:0006293 (spleen primordium),UBERON:0007497 (developing epithelial placode),UBERON:0007689 (thyroid diverticulum),UBERON:0008801 (parotid gland primordium),UBERON:0008947 (respiratory primordium),UBERON:0010375 (pancreas dorsal primordium),UBERON:0014903 (primordial vasculature),UBERON:0017651 (salivary gland primordium)
part of:FF:0000243 (chicken wing bud day 3 HH20)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001048 (primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.75e-21FFCP PHASE2:Mm9::chr10:92185101..92185154,-#_e8da2d34dde39a870ce59687c8711e0ep1@Nedd1
3.75e-21FFCP PHASE1:Mm9::chr10:92185101..92185154,-#_e8da2d34dde39a870ce59687c8711e0ep1@Nedd1
1.75e-20FFCP PHASE2:Hg19::chr17:75277512..75277592,+#_6a3e076594704d27313ab7c38f9192adp2@SEPT9
1.75e-20FFCP PHASE1:Hg19::chr17:75277512..75277592,+#_6a3e076594704d27313ab7c38f9192adp2@SEPT9
2.34e-20FFCP PHASE2:Mm9::chr9:51856351..51856424,+#_58e7349410d9ebad65a56cc4f2297af9p1@Rdx
2.34e-20FFCP PHASE1:Mm9::chr9:51856351..51856424,+#_58e7349410d9ebad65a56cc4f2297af9p1@Rdx
4.91e-19FFCP PHASE2:Hg19::chr12:53298841..53298867,-#_7e75447516780c98d4c5e3165b1c3923p1@KRT8
4.91e-19FFCP PHASE1:Hg19::chr12:53298841..53298867,-#_7e75447516780c98d4c5e3165b1c3923p1@KRT8
5.31e-19FFCP PHASE1:Mm9::chr4:133742934..133743005,-#_99527963ee14c1feb8a8137039e8c8c4p1@Ccdc21
5.31e-19FFCP PHASE2:Mm9::chr4:133742934..133743005,-#_99527963ee14c1feb8a8137039e8c8c4p1@Ccdc21
1.26e-18FFCP PHASE2:Hg19::chr11:77734260..77734331,-#_f94862d0ad1d74d985b6dcc151da0c22p1@KCTD14
1.26e-18FFCP PHASE1:Hg19::chr11:77734260..77734331,-#_f94862d0ad1d74d985b6dcc151da0c22p1@KCTD14
4.54e-18FFCP PHASE2:Mm9::chr18:32719511..32719541,-#_600f1228f4174425245c686a055c6961p2@Gypc
4.54e-18FFCP PHASE1:Mm9::chr18:32719511..32719541,-#_600f1228f4174425245c686a055c6961p2@Gypc
4.69e-18FFCP PHASE2:Mm9::chr1:167608953..167608974,-#_07e8a42d3b0cc0e6e2d886d60cc80441p@chr1:167608953..167608974, -
4.69e-18FFCP PHASE1:Mm9::chr1:167608953..167608974,-#_07e8a42d3b0cc0e6e2d886d60cc80441p@chr1:167608953..167608974, -
9.14e-18FFCP PHASE2:Hg19::chr12:53342893..53342911,+#_2c1ae9d6d3add7f1a4dabe8192b46cdep1@KRT18
9.14e-18FFCP PHASE1:Hg19::chr12:53342893..53342911,+#_2c1ae9d6d3add7f1a4dabe8192b46cdep1@KRT18
9.65e-18FFCP PHASE2:Mm9::chr4:135426317..135426318,+#_066264c6bb60f44bf9ae6f4f19270e07p@chr4:135426317..135426318, +
9.65e-18FFCP PHASE1:Mm9::chr4:135426317..135426318,+#_066264c6bb60f44bf9ae6f4f19270e07p@chr4:135426317..135426318, +
1.06e-17FFCP PHASE1:Mm9::chr17:45732452..45732524,-#_a101aaeb2e3f0e16169f6153e092971fp1@Slc29a1
1.06e-17FFCP PHASE2:Mm9::chr17:45732452..45732524,-#_a101aaeb2e3f0e16169f6153e092971fp1@Slc29a1
1.08e-17FFCP PHASE1:Mm9::chr6:136806111..136806131,-#_6d907976250c4fc6093799992a02bd48p1@Art4
1.08e-17FFCP PHASE2:Mm9::chr6:136806111..136806131,-#_6d907976250c4fc6093799992a02bd48p1@Art4
1.14e-17FFCP PHASE2:Mm9::chr13:68720964..68721024,-#_e66526b3ca1d80a59ab95e2653856e26p1@Mtrr
1.14e-17FFCP PHASE1:Mm9::chr13:68720964..68721024,-#_e66526b3ca1d80a59ab95e2653856e26p1@Mtrr
1.68e-17FFCP PHASE2:Mm9::chr8:109207008..109207024,+#_923f81df8daaccbf4798428185895127p3@Tmco7
1.68e-17FFCP PHASE1:Mm9::chr8:109207008..109207024,+#_923f81df8daaccbf4798428185895127p3@Tmco7
1.87e-17FFCP PHASE1:Mm9::chr1:74485466..74485476,-#_e5ae4acd79e4016c5037b302bc018712p@chr1:74485466..74485476, -
1.87e-17FFCP PHASE2:Mm9::chr1:74485466..74485476,-#_e5ae4acd79e4016c5037b302bc018712p@chr1:74485466..74485476, -
2.85e-17FFCP PHASE2:Mm9::chr3:108167831..108167861,+#_64099885f083f378a2ae725f477b0993p1@Mybphl
2.85e-17FFCP PHASE1:Mm9::chr3:108167831..108167861,+#_64099885f083f378a2ae725f477b0993p1@Mybphl
2.92e-17FFCP PHASE2:Hg19::chr8:11561684..11561751,+#_9071da704853f3dea3f649b01316778cp1@GATA4
2.92e-17FFCP PHASE1:Hg19::chr8:11561684..11561751,+#_9071da704853f3dea3f649b01316778cp1@GATA4
4.4e-17FFCP PHASE2:Hg19::chr12:52627019..52627037,+#_45dbb178b073e162818d437e016c2f47p1@KRT7
4.4e-17FFCP PHASE1:Hg19::chr12:52627019..52627037,+#_45dbb178b073e162818d437e016c2f47p1@KRT7
4.64e-17FFCP PHASE2:Mm9::chr18:77953185..77953240,-#_8b1729567e3530b0c992e19c397fed8cp3@8030462N17Rik
4.64e-17FFCP PHASE1:Mm9::chr18:77953185..77953240,-#_8b1729567e3530b0c992e19c397fed8cp3@8030462N17Rik
6.02e-17FFCP PHASE2:Mm9::chr6:119467972..119467977,-#_2005f54fd96c670ee10bfa2821676ecbp@chr6:119467972..119467977, -
6.02e-17FFCP PHASE1:Mm9::chr6:119467972..119467977,-#_2005f54fd96c670ee10bfa2821676ecbp@chr6:119467972..119467977, -
1.68e-16FFCP PHASE1:Mm9::chr5:101249948..101249994,-#_3906a83f940724b7e3dddf5e90cc6d40p1@Fam175a
1.68e-16FFCP PHASE2:Mm9::chr5:101249948..101249994,-#_3906a83f940724b7e3dddf5e90cc6d40p1@Fam175a
2.07e-16FFCP PHASE2:Mm9::chr14:63989446..63989459,+#_e485437f399df6044fabae395e4dab00p@chr14:63989446..63989459, +
2.07e-16FFCP PHASE1:Mm9::chr14:63989446..63989459,+#_e485437f399df6044fabae395e4dab00p@chr14:63989446..63989459, +
2.54e-16FFCP PHASE1:Mm9::chr9:62198973..62198977,+#_1e475515e414bab3f17ffb75c56cbe33p@chr9:62198973..62198977, +
2.54e-16FFCP PHASE2:Mm9::chr9:62198973..62198977,+#_1e475515e414bab3f17ffb75c56cbe33p@chr9:62198973..62198977, +
2.95e-16FFCP PHASE1:Mm9::chr12:81210520..81210566,-#_566097e566e68a751ae547177d90389dp@chr12:81210520..81210566, -
2.95e-16FFCP PHASE2:Mm9::chr12:81210520..81210566,-#_566097e566e68a751ae547177d90389dp@chr12:81210520..81210566, -
3.4e-16FFCP PHASE2:Mm9::chr5:120285161..120285176,+#_c56b0d9cbc6abbce755a311c2a4d2a1ap2@Tbx5
3.4e-16FFCP PHASE1:Mm9::chr5:120285161..120285176,+#_c56b0d9cbc6abbce755a311c2a4d2a1ap2@Tbx5
4.55e-16FFCP PHASE2:Mm9::chr11:100665286..100665300,-#_04d419c28f6b86eec8ca2b683aa6fbb8p@chr11:100665286..100665300, -
4.55e-16FFCP PHASE1:Mm9::chr11:100665286..100665300,-#_04d419c28f6b86eec8ca2b683aa6fbb8p@chr11:100665286..100665300, -
6.28e-16FFCP PHASE1:Mm9::chr3:115832367..115832382,-#_fde1d2ee07024fa754ab1293d15ee004p1@Vcam1
6.28e-16FFCP PHASE2:Mm9::chr3:115832367..115832382,-#_fde1d2ee07024fa754ab1293d15ee004p1@Vcam1
6.31e-16FFCP PHASE1:Mm9::chr1:180267213..180267309,+#_5901ee493584c5001f4bc5435f9fce53p@chr1:180267213..180267309, +
6.31e-16FFCP PHASE2:Mm9::chr1:180267213..180267309,+#_5901ee493584c5001f4bc5435f9fce53p@chr1:180267213..180267309, +
6.69e-16FFCP PHASE2:Hg19::chr11:76494393..76494407,+#_26192bc917f94dd40ebb4ec95af569d1p2@TSKU
6.69e-16FFCP PHASE1:Mm9::chr11:101108274..101108295,+#_ab2670b2a5681f7565697639a26243d8p4@Ramp2
6.69e-16FFCP PHASE1:Hg19::chr11:76494393..76494407,+#_26192bc917f94dd40ebb4ec95af569d1p2@TSKU
6.69e-16FFCP PHASE2:Mm9::chr11:101108274..101108295,+#_ab2670b2a5681f7565697639a26243d8p4@Ramp2
1.04e-15FFCP PHASE2:Hg19::chr12:33049691..33049756,-#_6403515d62a563628046f6092010d9b2p1@PKP2
1.04e-15FFCP PHASE1:Hg19::chr12:33049691..33049756,-#_6403515d62a563628046f6092010d9b2p1@PKP2
1.43e-15FFCP PHASE2:Hg19::chr9:127269661..127269719,-#_f6b91c444bf352027925018c52c7bcc3p1@NR5A1
1.43e-15FFCP PHASE1:Hg19::chr9:127269661..127269719,-#_f6b91c444bf352027925018c52c7bcc3p1@NR5A1
1.7e-15FFCP PHASE2:Mm9::chr1:93041634..93041678,+#_04db951dfdd960bc0a5c85b852ee03e4p1@Rbm44
1.7e-15FFCP PHASE1:Mm9::chr1:93041634..93041678,+#_04db951dfdd960bc0a5c85b852ee03e4p1@Rbm44
1.95e-15FFCP PHASE1:Mm9::chr15:44289044..44289063,+#_34a151a8727a039497fbfb0316978506p2@Pkhd1l1
1.95e-15FFCP PHASE2:Mm9::chr15:44289044..44289063,+#_34a151a8727a039497fbfb0316978506p2@Pkhd1l1
2.09e-15FFCP PHASE1:Mm9::chr14:62250725..62250730,-#_84ebd762d8956cc6d04d601cff79dbbep1@Mir16-1
2.09e-15FFCP PHASE2:Mm9::chr14:62250725..62250730,-#_84ebd762d8956cc6d04d601cff79dbbep1@Mir16-1
2.82e-15FFCP PHASE2:Mm9::chr5:120285130..120285141,+#_83211ac062553ca5e6ad76e1007013dfp3@Tbx5
2.82e-15FFCP PHASE1:Mm9::chr5:120285130..120285141,+#_83211ac062553ca5e6ad76e1007013dfp3@Tbx5
2.89e-15FFCP PHASE1:Mm9::chr12:29308215..29308236,-#_669aad2bd4550cb58d187d78b61edf3cp4@Colec11
2.89e-15FFCP PHASE2:Mm9::chr12:29308215..29308236,-#_669aad2bd4550cb58d187d78b61edf3cp4@Colec11
3.7e-15FFCP PHASE2:Mm9::chr2:78724457..78724461,+#_fb1eeaa05c3cde7cd0530631bce61a82p@chr2:78724457..78724461, +
3.7e-15FFCP PHASE1:Mm9::chr2:78724457..78724461,+#_fb1eeaa05c3cde7cd0530631bce61a82p@chr2:78724457..78724461, +
3.99e-15FFCP PHASE1:Mm9::chr14:52780600..52780604,-#_62f19d016e73e6a2b6ffb0d9ed521be9p@chr14:52780600..52780604, -
3.99e-15FFCP PHASE2:Mm9::chr14:52780600..52780604,-#_62f19d016e73e6a2b6ffb0d9ed521be9p@chr14:52780600..52780604, -
4.44e-15FFCP PHASE2:Mm9::chr1:167609049..167609071,-#_cd52b0cdb13db5774475c459d6b505cap@chr1:167609049..167609071, -
4.44e-15FFCP PHASE1:Mm9::chr1:167609049..167609071,-#_cd52b0cdb13db5774475c459d6b505cap@chr1:167609049..167609071, -
4.9e-15FFCP PHASE2:Mm9::chr9:32503590..32503680,+#_87d6326a1c955594eb546fad5819723dp1@Ets1
4.9e-15FFCP PHASE1:Mm9::chr9:32503590..32503680,+#_87d6326a1c955594eb546fad5819723dp1@Ets1
5.1e-15FFCP PHASE1:Hg19::chr6:34725181..34725195,+#_4749461441e8c920cb5b5eefc39cc09cp2@SNRPC
5.1e-15FFCP PHASE2:Hg19::chr6:34725181..34725195,+#_4749461441e8c920cb5b5eefc39cc09cp2@SNRPC
5.2e-15FFCP PHASE1:Mm9::chr17:32342934..32342939,-#_359ee7ceb61405a99ffae129be084906p@chr17:32342934..32342939, -
5.2e-15FFCP PHASE2:Mm9::chr17:32342934..32342939,-#_359ee7ceb61405a99ffae129be084906p@chr17:32342934..32342939, -
6.16e-15FFCP PHASE2:Mm9::chr2:103412278..103412282,+#_c296212f39774a57cf1cf7d4f6c6b1c4p@chr2:103412278..103412282, +
6.16e-15FFCP PHASE1:Mm9::chr2:103412278..103412282,+#_c296212f39774a57cf1cf7d4f6c6b1c4p@chr2:103412278..103412282, +
6.94e-15FFCP PHASE2:Mm9::chr13:41520412..41520465,-#_9b40bf985861de716e2259c5baed05e0p@chr13:41520412..41520465, -
6.94e-15FFCP PHASE1:Mm9::chr13:41520412..41520465,-#_9b40bf985861de716e2259c5baed05e0p@chr13:41520412..41520465, -
8.42e-15FFCP PHASE2:Hg19::chr20:60942361..60942376,-#_1403ba4fbc94e51d84a24feaec9fb50ep1@LAMA5
8.42e-15FFCP PHASE1:Hg19::chr20:60942361..60942376,-#_1403ba4fbc94e51d84a24feaec9fb50ep1@LAMA5
1.13e-14FFCP PHASE1:Hg19::chr19:45312347..45312374,+#_3bf62d5d05944af424bfdc8c29384c90p1@BCAM
1.13e-14FFCP PHASE2:Hg19::chr19:45312347..45312374,+#_3bf62d5d05944af424bfdc8c29384c90p1@BCAM
1.15e-14FFCP PHASE1:Mm9::chr11:94163794..94163797,-#_73fa44a1a0377fd40b850273d4bd7316p@chr11:94163794..94163797, -
1.15e-14FFCP PHASE2:Mm9::chr11:94163794..94163797,-#_73fa44a1a0377fd40b850273d4bd7316p@chr11:94163794..94163797, -
1.31e-14FFCP PHASE2:Mm9::chr1:193389782..193389792,-#_f13bfb0cf8b9771f3ac302d62bbd2d30p@chr1:193389782..193389792, -
1.31e-14FFCP PHASE1:Mm9::chr1:193389782..193389792,-#_f13bfb0cf8b9771f3ac302d62bbd2d30p@chr1:193389782..193389792, -
1.43e-14FFCP PHASE2:Mm9::chr12:29308178..29308194,-#_2bbbf2cc1a8ce32cd2d8b98704513e40p2@Colec11
1.43e-14FFCP PHASE1:Mm9::chr12:29308178..29308194,-#_2bbbf2cc1a8ce32cd2d8b98704513e40p2@Colec11

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001048&oldid=3277190"