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{{UBERON
{{UBERON
|id=UBERON:0001282
|alt_id=UBERON:FMA_17545-MA_0002669
|name=intralobular bile duct
|namespace=
|def="The Canals of Hering, or intrahepatic bile ductules, are part of the outflow system of exocrine bile product from the liver." [Wikipedia:Canals_of_Hering]
|xref=BTO:0002840;;FMA:17545;;MA:0002669;;ncithesaurus:Canal_of_Hering;;SCTID:227002;;SCTID:269922006
|is_a=UBERON:0003704
|synonym="canal of Hering" RELATED [];;"canal of Herring" EXACT [FMA:17545];;"canals of Hering" RELATED PLURAL [Wikipedia:Canals_of_Hering];;"cholangiole" EXACT [FMA:17545];;"duct of Herring" RELATED [Wikipedia:Canals_of_Hering];;"intrahepatic bile ductule" RELATED [Wikipedia:Canals_of_Hering]
|comment=Editor notes: Note that this is part of the intrahepatic bile duct in MA, as this class is more alike the tree in FMA. Note also that SCT has canal of Hering and Entire IBduct as the only sibling terms under 'Structure of intralobular bile duct' (i.e. the CoH is the only part of the entire IBduct)
|comment=Editor notes: Note that this is part of the intrahepatic bile duct in MA, as this class is more alike the tree in FMA. Note also that SCT has canal of Hering and Entire IBduct as the only sibling terms under 'Structure of intralobular bile duct' (i.e. the CoH is the only part of the entire IBduct)
|alt_id=UBERON:FMA_17545-MA_0002669
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The Canals of Hering, or intrahepatic bile ductules, are part of the outflow system of exocrine bile product from the liver." [Wikipedia:Canals_of_Hering]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001282
|is_a=UBERON:0003704 ;;UBERON:0014716
|is_obsolete=
|located_in=
|located_in=
|name=intralobular bile duct
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001172;;UBERON:0004647
|part_of=UBERON:0001172;;UBERON:0004647
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="canal of Hering" RELATED [];;"canal of Herring" EXACT [FMA:17545];;"canals of Hering" RELATED PLURAL [Wikipedia:Canals_of_Hering];;"cholangiole" EXACT [FMA:17545];;"duct of Herring" RELATED [Wikipedia:Canals_of_Hering];;"intrahepatic bile ductule" RELATED [Wikipedia:Canals_of_Hering]
|union_of=
|xref=BTO:0002840;;FMA:17545;;MA:0002669;;ncithesaurus:Canal_of_Hering;;SCTID:227002;;SCTID:269922006
}}
}}

Latest revision as of 17:17, 12 September 2014

Name:intralobular bile duct
Namespace:FANTOM
Definition:"The Canals of Hering, or intrahepatic bile ductules, are part of the outflow system of exocrine bile product from the liver." [Wikipedia:Canals_of_Hering]
Xrefs:
links:

BTO:0002840
FMA:17545
MA:0002669
ncithesaurus:Canal_of_Hering
SCTID:227002

SCTID:269922006
Synonyms: "canal of Hering" RELATED []
"canal of Herring" EXACT [FMA:17545]
"canals of Hering" RELATED PLURAL [Wikipedia:Canals_of_Hering]
"cholangiole" EXACT [FMA:17545]
"duct of Herring" RELATED [Wikipedia:Canals_of_Hering]
"intrahepatic bile ductule" RELATED [Wikipedia:Canals_of_Hering]
Comments:Editor notes: Note that this is part of the intrahepatic bile duct in MA, as this class is more alike the tree in FMA. Note also that SCT has canal of Hering and Entire IBduct as the only sibling terms under 'Structure of intralobular bile duct' (i.e. the CoH is the only part of the entire IBduct)
Alt_id: UBERON:FMA_17545-MA_0002669
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003704(intrahepatic bile duct),UBERON:0014716(interlobular duct)
part_of:UBERON:0001172(hepatic acinus),UBERON:0004647(liver lobule)



Children

derives from:FF:0102842 (cholangioma cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001282 (intralobular bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr2:234545437..234545446,+#_0faa5b08801d4d3d8acfcec0799e4af7p4@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr1:207059144..207059147,+#_0faa5b08801d4d3d8acfcec0799e4af7p@chr1:207059144..207059147, +
5.42e-195FFCP PHASE1:Hg19::chr18:1101041..1101044,+#_0faa5b08801d4d3d8acfcec0799e4af7p@chr18:1101041..1101044, +
5.42e-195FFCP PHASE2:Hg19::chr21:45826350..45826387,+#_0faa5b08801d4d3d8acfcec0799e4af7p22@TRPM2
5.42e-195FFCP PHASE1:Hg19::chr13:88008760..88008795,+#_0faa5b08801d4d3d8acfcec0799e4af7p@chr13:88008760..88008795, +
5.42e-195FFCP PHASE2:Hg19::chr2:234545708..234545716,+#_0faa5b08801d4d3d8acfcec0799e4af7p5@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr11:77795673..77795689,-#_0faa5b08801d4d3d8acfcec0799e4af7p@chr11:77795673..77795689, -
5.42e-195FFCP PHASE2:Hg19::chr1:207059144..207059147,+#_0faa5b08801d4d3d8acfcec0799e4af7p@chr1:207059144..207059147, +
5.42e-195FFCP PHASE1:Hg19::chr4:166513744..166513789,+#_0faa5b08801d4d3d8acfcec0799e4af7p@chr4:166513744..166513789, +
5.42e-195FFCP PHASE1:Hg19::chr2:234545407..234545408,+#_0faa5b08801d4d3d8acfcec0799e4af7p9@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr4:166513744..166513789,+#_0faa5b08801d4d3d8acfcec0799e4af7p@chr4:166513744..166513789, +
5.42e-195FFCP PHASE2:Hg19::chr18:1101041..1101044,+#_0faa5b08801d4d3d8acfcec0799e4af7p@chr18:1101041..1101044, +
5.42e-195FFCP PHASE2:Hg19::chr13:88008760..88008795,+#_0faa5b08801d4d3d8acfcec0799e4af7p@chr13:88008760..88008795, +
5.42e-195FFCP PHASE1:Hg19::chr2:234545437..234545446,+#_0faa5b08801d4d3d8acfcec0799e4af7p4@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr21:45826350..45826387,+#_0faa5b08801d4d3d8acfcec0799e4af7p22@TRPM2
5.42e-195FFCP PHASE2:Hg19::chr2:234545407..234545408,+#_0faa5b08801d4d3d8acfcec0799e4af7p9@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr11:77795673..77795689,-#_0faa5b08801d4d3d8acfcec0799e4af7p@chr11:77795673..77795689, -
5.42e-195FFCP PHASE1:Hg19::chr2:234545708..234545716,+#_0faa5b08801d4d3d8acfcec0799e4af7p5@UGT1A10
9.37e-99FFCP PHASE1:Hg19::chr13:98605781..98605792,+#_359c7dcf2c54171dc28fd163751df447p34@IPO5
9.37e-99FFCP PHASE2:Hg19::chr11:73874637..73874639,+#_359c7dcf2c54171dc28fd163751df447p@chr11:73874637..73874639, +
9.37e-99FFCP PHASE1:Hg19::chr5:52786654..52786665,-#_359c7dcf2c54171dc28fd163751df447p@chr5:52786654..52786665, -
9.37e-99FFCP PHASE2:Hg19::chr5:52786654..52786665,-#_359c7dcf2c54171dc28fd163751df447p@chr5:52786654..52786665, -
9.37e-99FFCP PHASE1:Hg19::chr2:158155402..158155409,-#_359c7dcf2c54171dc28fd163751df447p3@ENST00000410472
9.37e-99FFCP PHASE2:Hg19::chr13:98605781..98605792,+#_359c7dcf2c54171dc28fd163751df447p34@IPO5
9.37e-99FFCP PHASE2:Hg19::chr6:32522832..32522842,-#_359c7dcf2c54171dc28fd163751df447p@chr6:32522832..32522842, -
9.37e-99FFCP PHASE1:Hg19::chr11:73874637..73874639,+#_359c7dcf2c54171dc28fd163751df447p@chr11:73874637..73874639, +
9.37e-99FFCP PHASE1:Hg19::chr6:32522832..32522842,-#_359c7dcf2c54171dc28fd163751df447p@chr6:32522832..32522842, -
9.37e-99FFCP PHASE2:Hg19::chr2:158155402..158155409,-#_359c7dcf2c54171dc28fd163751df447p3@ENST00000410472
2.55e-98FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_065033d902d77f995cee03a91ff45361p3@FMR1NB
2.55e-98FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_065033d902d77f995cee03a91ff45361p3@FMR1NB
2.55e-98FFCP PHASE1:Hg19::chr11:7904519..7904534,-#_065033d902d77f995cee03a91ff45361p1@ENST00000529488, p1@ENST00000533634
2.55e-98FFCP PHASE1:Hg19::chr2:158005569..158005571,-#_065033d902d77f995cee03a91ff45361p@chr2:158005569..158005571, -
2.55e-98FFCP PHASE2:Hg19::chr2:158005569..158005571,-#_065033d902d77f995cee03a91ff45361p@chr2:158005569..158005571, -
2.55e-98FFCP PHASE2:Hg19::chr11:7904519..7904534,-#_065033d902d77f995cee03a91ff45361p1@ENST00000529488, p1@ENST00000533634
2.55e-98FFCP PHASE2:Hg19::chr9:26936427..26936432,-#_065033d902d77f995cee03a91ff45361p@chr9:26936427..26936432, -
2.55e-98FFCP PHASE1:Hg19::chr9:26936427..26936432,-#_065033d902d77f995cee03a91ff45361p@chr9:26936427..26936432, -
1.23e-66FFCP PHASE1:Hg19::chr2:234545393..234545403,+#_618f4b9c959bfa94e6d84523875d00ccp3@UGT1A10
1.23e-66FFCP PHASE1:Hg19::chr6:117747000..117747010,-#_618f4b9c959bfa94e6d84523875d00ccp9@ROS1
1.23e-66FFCP PHASE2:Hg19::chr6:117747000..117747010,-#_618f4b9c959bfa94e6d84523875d00ccp9@ROS1
1.23e-66FFCP PHASE1:Hg19::chr15:32969649..32969656,+#_618f4b9c959bfa94e6d84523875d00ccp14@SCG5
1.23e-66FFCP PHASE2:Hg19::chr2:234545393..234545403,+#_618f4b9c959bfa94e6d84523875d00ccp3@UGT1A10
1.23e-66FFCP PHASE2:Hg19::chr4:33469231..33469240,+#_618f4b9c959bfa94e6d84523875d00ccp@chr4:33469231..33469240, +
1.23e-66FFCP PHASE1:Hg19::chr4:33469231..33469240,+#_618f4b9c959bfa94e6d84523875d00ccp@chr4:33469231..33469240, +
1.23e-66FFCP PHASE2:Hg19::chr15:32969649..32969656,+#_618f4b9c959bfa94e6d84523875d00ccp14@SCG5
2.39e-66FFCP PHASE2:Hg19::chr4:33469257..33469268,+#_afbc3fd5f90335d4db2f46c963524d45p@chr4:33469257..33469268, +
2.39e-66FFCP PHASE1:Hg19::chr4:33469257..33469268,+#_afbc3fd5f90335d4db2f46c963524d45p@chr4:33469257..33469268, +
4.66e-66FFCP PHASE1:Hg19::chr22:49769903..49769910,+#_ca8ca5ecc1b7506fcb1ad7905bf6099bp@chr22:49769903..49769910, +
4.66e-66FFCP PHASE2:Hg19::chr22:49769903..49769910,+#_ca8ca5ecc1b7506fcb1ad7905bf6099bp@chr22:49769903..49769910, +
1.46e-50FFCP PHASE1:Hg19::chr18:514455..514467,+#_7799bb5ebe002517bfae62ce96420490p@chr18:514455..514467, +
1.46e-50FFCP PHASE2:Hg19::chr3:106556772..106556810,-#_7799bb5ebe002517bfae62ce96420490p@chr3:106556772..106556810, -
1.46e-50FFCP PHASE2:Hg19::chr6:32522809..32522827,-#_7799bb5ebe002517bfae62ce96420490p@chr6:32522809..32522827, -
1.46e-50FFCP PHASE1:Hg19::chr3:106556772..106556810,-#_7799bb5ebe002517bfae62ce96420490p@chr3:106556772..106556810, -
1.46e-50FFCP PHASE1:Hg19::chr6:32522809..32522827,-#_7799bb5ebe002517bfae62ce96420490p@chr6:32522809..32522827, -
1.46e-50FFCP PHASE2:Hg19::chr6:72255927..72255937,+#_7799bb5ebe002517bfae62ce96420490p@chr6:72255927..72255937, +
1.46e-50FFCP PHASE2:Hg19::chr18:514455..514467,+#_7799bb5ebe002517bfae62ce96420490p@chr18:514455..514467, +
1.46e-50FFCP PHASE1:Hg19::chr6:72255927..72255937,+#_7799bb5ebe002517bfae62ce96420490p@chr6:72255927..72255937, +
2.42e-50FFCP PHASE2:Hg19::chr11:77794459..77794475,+#_e792e30f0dc1d90d91a8f74f57d5c023p@chr11:77794459..77794475, +
2.42e-50FFCP PHASE1:Hg19::chr2:187867941..187867952,+#_e792e30f0dc1d90d91a8f74f57d5c023p1@ENST00000453517
2.42e-50FFCP PHASE2:Hg19::chr4:5526611..5526614,-#_e792e30f0dc1d90d91a8f74f57d5c023p@chr4:5526611..5526614, -
2.42e-50FFCP PHASE1:Hg19::chr4:5526611..5526614,-#_e792e30f0dc1d90d91a8f74f57d5c023p@chr4:5526611..5526614, -
2.42e-50FFCP PHASE2:Hg19::chr2:187867941..187867952,+#_e792e30f0dc1d90d91a8f74f57d5c023p1@ENST00000453517
2.42e-50FFCP PHASE1:Hg19::chr11:77794459..77794475,+#_e792e30f0dc1d90d91a8f74f57d5c023p@chr11:77794459..77794475, +
3.99e-50FFCP PHASE2:Hg19::chr21:29774431..29774441,-#_45a49777d38e3bc7ce33ac248626066bp@chr21:29774431..29774441, -
3.99e-50FFCP PHASE1:Hg19::chr21:10597500..10597509,-#_45a49777d38e3bc7ce33ac248626066bp2@uc011abv.1
3.99e-50FFCP PHASE2:Hg19::chr22:49769966..49769971,+#_45a49777d38e3bc7ce33ac248626066bp@chr22:49769966..49769971, +
3.99e-50FFCP PHASE1:Hg19::chr11:77792240..77792241,+#_45a49777d38e3bc7ce33ac248626066bp@chr11:77792240..77792241, +
3.99e-50FFCP PHASE2:Hg19::chr21:10597500..10597509,-#_45a49777d38e3bc7ce33ac248626066bp2@uc011abv.1
3.99e-50FFCP PHASE1:Hg19::chr20:50479417..50479427,-#_45a49777d38e3bc7ce33ac248626066bp2@ENST00000438154
3.99e-50FFCP PHASE1:Hg19::chr21:29774431..29774441,-#_45a49777d38e3bc7ce33ac248626066bp@chr21:29774431..29774441, -
3.99e-50FFCP PHASE2:Hg19::chr11:77792240..77792241,+#_45a49777d38e3bc7ce33ac248626066bp@chr11:77792240..77792241, +
3.99e-50FFCP PHASE2:Hg19::chr20:50479417..50479427,-#_45a49777d38e3bc7ce33ac248626066bp2@ENST00000438154
3.99e-50FFCP PHASE1:Hg19::chr22:49769966..49769971,+#_45a49777d38e3bc7ce33ac248626066bp@chr22:49769966..49769971, +
6.58e-50FFCP PHASE1:Hg19::chr21:28899015..28899027,+#_c753eb3d919cfd36fd92111250c2e965p@chr21:28899015..28899027, +
6.58e-50FFCP PHASE2:Hg19::chr12:19928351..19928358,+#_c753eb3d919cfd36fd92111250c2e965p2@ENST00000535764
6.58e-50FFCP PHASE2:Hg19::chr21:28899015..28899027,+#_c753eb3d919cfd36fd92111250c2e965p@chr21:28899015..28899027, +
6.58e-50FFCP PHASE1:Hg19::chrX:70798285..70798290,+#_c753eb3d919cfd36fd92111250c2e965p1@ACRC
6.58e-50FFCP PHASE2:Hg19::chrX:70798285..70798290,+#_c753eb3d919cfd36fd92111250c2e965p1@ACRC
6.58e-50FFCP PHASE1:Hg19::chr12:19928351..19928358,+#_c753eb3d919cfd36fd92111250c2e965p2@ENST00000535764
6.58e-50FFCP PHASE1:Hg19::chr5:5146235..5146246,+#_c753eb3d919cfd36fd92111250c2e965p7@ADAMTS16
6.58e-50FFCP PHASE2:Hg19::chr5:5146235..5146246,+#_c753eb3d919cfd36fd92111250c2e965p7@ADAMTS16
6.62e-41FFCP PHASE2:Hg19::chr18:514484..514495,+#_fdb9bd12d843dff23c16609564ac206bp@chr18:514484..514495, +
6.62e-41FFCP PHASE1:Hg19::chr2:38402050..38402059,+#_fdb9bd12d843dff23c16609564ac206bp@chr2:38402050..38402059, +
6.62e-41FFCP PHASE2:Hg19::chr2:158155450..158155474,-#_fdb9bd12d843dff23c16609564ac206bp1@ENST00000410472
6.62e-41FFCP PHASE2:Hg19::chr18:1099004..1099011,+#_fdb9bd12d843dff23c16609564ac206bp@chr18:1099004..1099011, +
6.62e-41FFCP PHASE2:Hg19::chr2:38402050..38402059,+#_fdb9bd12d843dff23c16609564ac206bp@chr2:38402050..38402059, +
6.62e-41FFCP PHASE1:Hg19::chr18:514484..514495,+#_fdb9bd12d843dff23c16609564ac206bp@chr18:514484..514495, +
6.62e-41FFCP PHASE1:Hg19::chr4:166513830..166513834,+#_fdb9bd12d843dff23c16609564ac206bp@chr4:166513830..166513834, +
6.62e-41FFCP PHASE2:Hg19::chr4:166513830..166513834,+#_fdb9bd12d843dff23c16609564ac206bp@chr4:166513830..166513834, +
6.62e-41FFCP PHASE2:Hg19::chrX:147062877..147062885,+#_fdb9bd12d843dff23c16609564ac206bp2@FMR1NB
6.62e-41FFCP PHASE1:Hg19::chr2:158155450..158155474,-#_fdb9bd12d843dff23c16609564ac206bp1@ENST00000410472
6.62e-41FFCP PHASE1:Hg19::chrX:147062877..147062885,+#_fdb9bd12d843dff23c16609564ac206bp2@FMR1NB
6.62e-41FFCP PHASE1:Hg19::chr18:1099004..1099011,+#_fdb9bd12d843dff23c16609564ac206bp@chr18:1099004..1099011, +
6.62e-41FFCP PHASE1:Hg19::chr3:98275000..98275016,-#_fdb9bd12d843dff23c16609564ac206bp@chr3:98275000..98275016, -
6.62e-41FFCP PHASE2:Hg19::chr6:75912602..75912613,-#_fdb9bd12d843dff23c16609564ac206bp25@COL12A1
6.62e-41FFCP PHASE2:Hg19::chr3:98275000..98275016,-#_fdb9bd12d843dff23c16609564ac206bp@chr3:98275000..98275016, -
6.62e-41FFCP PHASE1:Hg19::chr6:75912602..75912613,-#_fdb9bd12d843dff23c16609564ac206bp25@COL12A1
9.91e-41FFCP PHASE2:Hg19::chr6:67772946..67772961,+#_577bbda9ff5893b4938d1f145d0c4af2p@chr6:67772946..67772961, +
9.91e-41FFCP PHASE1:Hg19::chr6:67772946..67772961,+#_577bbda9ff5893b4938d1f145d0c4af2p@chr6:67772946..67772961, +
9.91e-41FFCP PHASE1:Hg19::chr1:75600333..75600348,+#_577bbda9ff5893b4938d1f145d0c4af2p5@LHX8
9.91e-41FFCP PHASE1:Hg19::chrX:55115486..55115496,+#_577bbda9ff5893b4938d1f145d0c4af2p3@PAGE2

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