UBERON:0001874: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0001874
|name=putamen
|namespace=
|def="Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external caps...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_61834-MA_0000895 | ||
| | |anatomical_img_id=FMA:61834 | ||
|comment=CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) | |comment=CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) | ||
|created_by= | |created_by= | ||
| | |def="Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001874 | |||
|is_a=UBERON:0009663 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=putamen | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001869;;UBERON:0002435;;UBERON:0005383 | |part_of=UBERON:0001869;;UBERON:0002435;;UBERON:0005383 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset=uberon_slim | |||
|synonym="nucleus putamen" EXACT [] | |||
|union_of= | |||
|xref=BM:Tel-Pu;;EV:0100187;;FMA:61834;;GAID:671;;http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png;;MA:0000895;;MESH:A.08.186.211.730.885.105.487.550.784;;ncithesaurus:Putamen;;NIF_GrossAnatomy:birnlex_809;;SCTID:281512002;;VHOG:0001456 | |||
}} | }} |
Latest revision as of 17:21, 12 September 2014
Name: | putamen | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen] | ||
Xrefs: |
| ||
Synonyms: | "nucleus putamen" EXACT [] | ||
Comments: | CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) | ||
Alt_id: | UBERON:FMA_61834-MA_0000895 | ||
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0009663(telencephalic nucleus) |
---|---|
part_of: | UBERON:0001869(cerebral hemisphere),UBERON:0002435(striatum),UBERON:0005383(caudate-putamen) |
Children
is a: | FF:10365-105F5 (putamen, newborn, donor10223),FF:10372-105G3 (putamen, adult, donor10258) |
---|---|
derives from: | FF:0010087 (human putamen - adult donor sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10152-102I8 (putamen, adult, donor10252)
- 10176-103C5 (putamen, adult, donor10196)
- 10365-105F5 (putamen, newborn, donor10223)
- 10372-105G3 (putamen, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001874 (putamen), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
5.42e-195 | FFCP PHASE2:Hg19::chr7:29218060..29218067,-#_5016b4e8f653773108855684fc348c5d | p@chr7:29218060..29218067, - |
5.42e-195 | FFCP PHASE1:Hg19::chr15:28197051..28197058,-#_5016b4e8f653773108855684fc348c5d | p@chr15:28197051..28197058, - |
5.42e-195 | FFCP PHASE1:Hg19::chr7:29218060..29218067,-#_5016b4e8f653773108855684fc348c5d | p@chr7:29218060..29218067, - |
5.42e-195 | FFCP PHASE2:Hg19::chr15:28197051..28197058,-#_5016b4e8f653773108855684fc348c5d | p@chr15:28197051..28197058, - |
9.37e-99 | FFCP PHASE2:Hg19::chr4:156417309..156417316,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr4:156417309..156417316, + |
9.37e-99 | FFCP PHASE2:Hg19::chr21:27651095..27651104,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr21:27651095..27651104, + |
9.37e-99 | FFCP PHASE1:Hg19::chr10:26097547..26097552,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr10:26097547..26097552, + |
9.37e-99 | FFCP PHASE2:Hg19::chr6:145132482..145132485,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr6:145132482..145132485, + |
9.37e-99 | FFCP PHASE1:Hg19::chr4:156417309..156417316,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr4:156417309..156417316, + |
9.37e-99 | FFCP PHASE1:Hg19::chr21:27651095..27651104,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr21:27651095..27651104, + |
9.37e-99 | FFCP PHASE2:Hg19::chr9:85575924..85575932,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr9:85575924..85575932, + |
9.37e-99 | FFCP PHASE2:Hg19::chr15:26273479..26273488,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr15:26273479..26273488, + |
9.37e-99 | FFCP PHASE1:Hg19::chr6:145132482..145132485,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr6:145132482..145132485, + |
9.37e-99 | FFCP PHASE1:Hg19::chr19:49016307..49016316,-#_31e51a0e6a932dc2139a361d410ec5ae | p@chr19:49016307..49016316, - |
9.37e-99 | FFCP PHASE1:Hg19::chr4:185115370..185115380,-#_31e51a0e6a932dc2139a361d410ec5ae | p@chr4:185115370..185115380, - |
9.37e-99 | FFCP PHASE1:Hg19::chr9:85575924..85575932,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr9:85575924..85575932, + |
9.37e-99 | FFCP PHASE2:Hg19::chr19:49016307..49016316,-#_31e51a0e6a932dc2139a361d410ec5ae | p@chr19:49016307..49016316, - |
9.37e-99 | FFCP PHASE2:Hg19::chr4:185115370..185115380,-#_31e51a0e6a932dc2139a361d410ec5ae | p@chr4:185115370..185115380, - |
9.37e-99 | FFCP PHASE2:Hg19::chrX:82763874..82763884,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chrX:82763874..82763884, + |
9.37e-99 | FFCP PHASE1:Hg19::chr11:18765490..18765499,-#_31e51a0e6a932dc2139a361d410ec5ae | p16@PTPN5 |
9.37e-99 | FFCP PHASE1:Hg19::chr15:26273479..26273488,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr15:26273479..26273488, + |
9.37e-99 | FFCP PHASE2:Hg19::chr11:18765490..18765499,-#_31e51a0e6a932dc2139a361d410ec5ae | p16@PTPN5 |
9.37e-99 | FFCP PHASE2:Hg19::chr10:26097547..26097552,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chr10:26097547..26097552, + |
9.37e-99 | FFCP PHASE1:Hg19::chrX:82763874..82763884,+#_31e51a0e6a932dc2139a361d410ec5ae | p@chrX:82763874..82763884, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:132589601..132589606,-#_bdef015ef52ff2d979fa5736ad81d3a6 | p2@ENST00000437330 |
2.55e-98 | FFCP PHASE1:Hg19::chr7:14943137..14943144,-#_bdef015ef52ff2d979fa5736ad81d3a6 | p25@DGKB |
2.55e-98 | FFCP PHASE2:Hg19::chr2:132589601..132589606,-#_bdef015ef52ff2d979fa5736ad81d3a6 | p2@ENST00000437330 |
2.55e-98 | FFCP PHASE1:Hg19::chr5:163792789..163792792,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr5:163792789..163792792, + |
2.55e-98 | FFCP PHASE2:Hg19::chrX:110463772..110463784,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chrX:110463772..110463784, + |
2.55e-98 | FFCP PHASE1:Hg19::chr4:185115354..185115359,-#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr4:185115354..185115359, - |
2.55e-98 | FFCP PHASE1:Hg19::chr16:5945370..5945377,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr16:5945370..5945377, + |
2.55e-98 | FFCP PHASE2:Hg19::chr14:64884595..64884607,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr14:64884595..64884607, + |
2.55e-98 | FFCP PHASE2:Hg19::chr4:185115354..185115359,-#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr4:185115354..185115359, - |
2.55e-98 | FFCP PHASE2:Hg19::chr17:17642493..17642503,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr17:17642493..17642503, + |
2.55e-98 | FFCP PHASE2:Hg19::chr5:132607538..132607543,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr5:132607538..132607543, + |
2.55e-98 | FFCP PHASE2:Hg19::chr16:5945370..5945377,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr16:5945370..5945377, + |
2.55e-98 | FFCP PHASE1:Hg19::chr3:11019677..11019690,-#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr3:11019677..11019690, - |
2.55e-98 | FFCP PHASE2:Hg19::chr3:11019677..11019690,-#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr3:11019677..11019690, - |
2.55e-98 | FFCP PHASE1:Hg19::chrX:110463772..110463784,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chrX:110463772..110463784, + |
2.55e-98 | FFCP PHASE1:Hg19::chr14:64884595..64884607,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr14:64884595..64884607, + |
2.55e-98 | FFCP PHASE2:Hg19::chr17:17642516..17642523,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr17:17642516..17642523, + |
2.55e-98 | FFCP PHASE2:Hg19::chr7:14943137..14943144,-#_bdef015ef52ff2d979fa5736ad81d3a6 | p25@DGKB |
2.55e-98 | FFCP PHASE1:Hg19::chr17:17642493..17642503,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr17:17642493..17642503, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:132607538..132607543,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr5:132607538..132607543, + |
2.55e-98 | FFCP PHASE1:Hg19::chr4:47408745..47408748,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr4:47408745..47408748, + |
2.55e-98 | FFCP PHASE2:Hg19::chr5:163792789..163792792,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr5:163792789..163792792, + |
2.55e-98 | FFCP PHASE2:Hg19::chr4:47408745..47408748,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr4:47408745..47408748, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:244945778..244945781,-#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr1:244945778..244945781, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:244945778..244945781,-#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr1:244945778..244945781, - |
2.55e-98 | FFCP PHASE1:Hg19::chr17:17642516..17642523,+#_bdef015ef52ff2d979fa5736ad81d3a6 | p@chr17:17642516..17642523, + |
1.23e-66 | FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_308bf6ab5017221bbf4817c3df8f35ed | p@chr3:63542313..63542321, + |
1.23e-66 | FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_308bf6ab5017221bbf4817c3df8f35ed | p@chr3:63542313..63542321, + |
1.23e-66 | FFCP PHASE1:Hg19::chr5:132149081..132149086,+#_308bf6ab5017221bbf4817c3df8f35ed | p8@SOWAHA |
1.23e-66 | FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_308bf6ab5017221bbf4817c3df8f35ed | p27@GNAL |
1.23e-66 | FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_308bf6ab5017221bbf4817c3df8f35ed | p@chrX:102663083..102663098, + |
1.23e-66 | FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_308bf6ab5017221bbf4817c3df8f35ed | p2@DGKH |
1.23e-66 | FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_308bf6ab5017221bbf4817c3df8f35ed | p27@GNAL |
1.23e-66 | FFCP PHASE2:Hg19::chr2:2746794..2746795,-#_308bf6ab5017221bbf4817c3df8f35ed | p@chr2:2746794..2746795, - |
1.23e-66 | FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_308bf6ab5017221bbf4817c3df8f35ed | p@chrX:102663083..102663098, + |
1.23e-66 | FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_308bf6ab5017221bbf4817c3df8f35ed | p2@DGKH |
1.23e-66 | FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_308bf6ab5017221bbf4817c3df8f35ed | p@chr11:47617035..47617045, - |
1.23e-66 | FFCP PHASE2:Hg19::chr15:92236013..92236021,+#_308bf6ab5017221bbf4817c3df8f35ed | p@chr15:92236013..92236021, + |
1.23e-66 | FFCP PHASE2:Hg19::chr5:132149081..132149086,+#_308bf6ab5017221bbf4817c3df8f35ed | p8@SOWAHA |
1.23e-66 | FFCP PHASE1:Hg19::chr2:2746794..2746795,-#_308bf6ab5017221bbf4817c3df8f35ed | p@chr2:2746794..2746795, - |
1.23e-66 | FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_308bf6ab5017221bbf4817c3df8f35ed | p@chr4:71945904..71945922, + |
1.23e-66 | FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_308bf6ab5017221bbf4817c3df8f35ed | p@chr4:71945904..71945922, + |
1.23e-66 | FFCP PHASE1:Hg19::chr15:92236013..92236021,+#_308bf6ab5017221bbf4817c3df8f35ed | p@chr15:92236013..92236021, + |
1.23e-66 | FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_308bf6ab5017221bbf4817c3df8f35ed | p@chr11:47617035..47617045, - |
2.39e-66 | FFCP PHASE2:Hg19::chr10:66185829..66185832,+#_0df18690229dbf909ed24e4568f3af68 | p@chr10:66185829..66185832, + |
2.39e-66 | FFCP PHASE2:Hg19::chr11:30038451..30038462,-#_0df18690229dbf909ed24e4568f3af68 | p3@KCNA4 |
2.39e-66 | FFCP PHASE1:Hg19::chr19:18228941..18228948,+#_0df18690229dbf909ed24e4568f3af68 | p@chr19:18228941..18228948, + |
2.39e-66 | FFCP PHASE1:Hg19::chr22:27767706..27767718,+#_0df18690229dbf909ed24e4568f3af68 | p@chr22:27767706..27767718, + |
2.39e-66 | FFCP PHASE1:Hg19::chr8:91248240..91248267,+#_0df18690229dbf909ed24e4568f3af68 | p@chr8:91248240..91248267, + |
2.39e-66 | FFCP PHASE2:Hg19::chr19:18228941..18228948,+#_0df18690229dbf909ed24e4568f3af68 | p@chr19:18228941..18228948, + |
2.39e-66 | FFCP PHASE2:Hg19::chr22:27767706..27767718,+#_0df18690229dbf909ed24e4568f3af68 | p@chr22:27767706..27767718, + |
2.39e-66 | FFCP PHASE1:Hg19::chr11:63213436..63213461,-#_0df18690229dbf909ed24e4568f3af68 | p@chr11:63213436..63213461, - |
2.39e-66 | FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_0df18690229dbf909ed24e4568f3af68 | p@chr8:115354253..115354290, + |
2.39e-66 | FFCP PHASE1:Hg19::chr10:66185829..66185832,+#_0df18690229dbf909ed24e4568f3af68 | p@chr10:66185829..66185832, + |
2.39e-66 | FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_0df18690229dbf909ed24e4568f3af68 | p22@PRLR |
2.39e-66 | FFCP PHASE2:Hg19::chrX:38429964..38429975,+#_0df18690229dbf909ed24e4568f3af68 | p11@TSPAN7 |
2.39e-66 | FFCP PHASE2:Hg19::chr11:63213436..63213461,-#_0df18690229dbf909ed24e4568f3af68 | p@chr11:63213436..63213461, - |
2.39e-66 | FFCP PHASE2:Hg19::chr5:138298043..138298048,+#_0df18690229dbf909ed24e4568f3af68 | p@chr5:138298043..138298048, + |
2.39e-66 | FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_0df18690229dbf909ed24e4568f3af68 | p11@SCN8A |
2.39e-66 | FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_0df18690229dbf909ed24e4568f3af68 | p@chr8:115354253..115354290, + |
2.39e-66 | FFCP PHASE1:Hg19::chr11:30037513..30037524,-#_0df18690229dbf909ed24e4568f3af68 | p@chr11:30037513..30037524, - |
2.39e-66 | FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_0df18690229dbf909ed24e4568f3af68 | p@chr15:37777334..37777345, - |
2.39e-66 | FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_0df18690229dbf909ed24e4568f3af68 | p@chr18:47967443..47967452, - |
2.39e-66 | FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_0df18690229dbf909ed24e4568f3af68 | p11@SCN8A |
2.39e-66 | FFCP PHASE2:Hg19::chr4:158224716..158224732,+#_0df18690229dbf909ed24e4568f3af68 | p1@CU688562 |
2.39e-66 | FFCP PHASE1:Hg19::chrX:38429964..38429975,+#_0df18690229dbf909ed24e4568f3af68 | p11@TSPAN7 |
2.39e-66 | FFCP PHASE1:Hg19::chr4:158224716..158224732,+#_0df18690229dbf909ed24e4568f3af68 | p1@CU688562 |
2.39e-66 | FFCP PHASE2:Hg19::chr8:91248240..91248267,+#_0df18690229dbf909ed24e4568f3af68 | p@chr8:91248240..91248267, + |
2.39e-66 | FFCP PHASE1:Hg19::chr11:30038451..30038462,-#_0df18690229dbf909ed24e4568f3af68 | p3@KCNA4 |
2.39e-66 | FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_0df18690229dbf909ed24e4568f3af68 | p@chr15:37777334..37777345, - |
2.39e-66 | FFCP PHASE1:Hg19::chr5:138298043..138298048,+#_0df18690229dbf909ed24e4568f3af68 | p@chr5:138298043..138298048, + |
2.39e-66 | FFCP PHASE2:Hg19::chr11:30037513..30037524,-#_0df18690229dbf909ed24e4568f3af68 | p@chr11:30037513..30037524, - |
2.39e-66 | FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_0df18690229dbf909ed24e4568f3af68 | p22@PRLR |
2.39e-66 | FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_0df18690229dbf909ed24e4568f3af68 | p@chr18:47967443..47967452, - |
4.66e-66 | FFCP PHASE1:Hg19::chr16:6069831..6069838,+#_2192e803320cd993e4f9a326ccada474 | p41@RBFOX1 |
4.66e-66 | FFCP PHASE2:Hg19::chr17:9862706..9862734,-#_2192e803320cd993e4f9a326ccada474 | p34@GAS7 |