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{{UBERON
{{UBERON
|id=UBERON:0001949
|alt_id=UBERON:FMA_62423-MA_0001576
|name=gingival epithelium
|namespace=
|def="A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998]
|xref=BTO:0004998;;FMA:62423;;MA:0001576;;ncithesaurus:Gingival_Epithelium
|is_a=UBERON:0000486;;UBERON:0003929;;UBERON:0004121;;UBERON:0004807
|synonym="epithelial tissue of gingiva" EXACT [OBOL:automatic];;"epithelium of gingiva" EXACT [];;"gingiva epithelial tissue" EXACT [OBOL:automatic];;"gingiva epithelium" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=UBERON:FMA_62423-MA_0001576
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001949
|is_a=UBERON:0002424 ;;UBERON:0006915
|is_obsolete=
|located_in=
|located_in=
|name=gingival epithelium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001828
|part_of=UBERON:0001828
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="epithelial tissue of gingiva" EXACT [OBOL:automatic];;"epithelium of gingiva" EXACT [];;"gingiva epithelial tissue" EXACT [OBOL:automatic];;"gingiva epithelium" EXACT [OBOL:automatic]
|union_of=
|xref=BTO:0004998;;FMA:62423;;MA:0001576;;ncithesaurus:Gingival_Epithelium
}}
}}

Latest revision as of 17:23, 12 September 2014

Name:gingival epithelium
Namespace:FANTOM
Definition:"A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998]
Xrefs:
links:

BTO:0004998
FMA:62423
MA:0001576

ncithesaurus:Gingival_Epithelium
Synonyms: "epithelial tissue of gingiva" EXACT [OBOL:automatic]
"epithelium of gingiva" EXACT []
"gingiva epithelial tissue" EXACT [OBOL:automatic]
"gingiva epithelium" EXACT [OBOL:automatic]
Alt_id: UBERON:FMA_62423-MA_0001576

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002424(oral epithelium),UBERON:0006915(stratified squamous epithelium)
part_of:UBERON:0001828(gingiva)



Children

part of:CL:0002621 (gingival epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
  • 11302-117B6 (Gingival epithelial cells, donor2 (GEA14))
  • 11379-118B2 (Gingival epithelial cells, donor3 (GEA15))


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001949 (gingival epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data