UBERON:0003084: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0003084
|name=heart primordium
|namespace=
|def="Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two...") |
No edit summary |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:XAO_0000336-ZFA_0000028 | ||
|comment=editor note: should probably be fused with heart rudiment. | |comment=editor note: should probably be fused with heart rudiment. | ||
|created_by= | |created_by= | ||
| | |def="Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0003081;;UBERON:0004140;;UBERON:0007005 | |develops_from=UBERON:0003081;;UBERON:0004140;;UBERON:0007005 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003084 | |||
|is_a=UBERON:0001048 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=heart primordium | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0004535 | |part_of=UBERON:0004535 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001.[TAO]" xsd:string;;UBPROP:0000001 "The fused aspects of ventral mesoderm, which have migrated from either side of the prechordal plate, and fused ventrally, just behind the cement gland. They will give rise to the endocardium at NF stage 27&28.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: develops_from lateral mesoderm (TAO:0001065)[TAO]" xsd:string | |||
|subset=uberon_slim | |||
|synonym="fused heart primordium" RELATED [] | |||
|union_of= | |||
|xref=AAO:0011044;;BTO:0001887;;ncithesaurus:Primordium_of_the_Heart;;TAO:0000028;;XAO:0000336;;ZFA:0000028 | |||
}} | }} | ||
Latest revision as of 17:37, 12 September 2014
| Name: | heart primordium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: | "fused heart primordium" RELATED [] | ||
| Comments: | editor note: should probably be fused with heart rudiment. | ||
| Alt_id: | UBERON:XAO_0000336-ZFA_0000028 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001048(primordium) |
|---|---|
| develops_from: | UBERON:0003081(lateral plate mesoderm),UBERON:0004140(primary heart field),UBERON:0007005(cardiac mesoderm) |
| part_of: | UBERON:0004535(cardiovascular system) |
Children
| develops from: | UBERON:0002165 (endocardium),UBERON:0004139 (cardiogenic plate),UBERON:0004291 (heart rudiment),UBERON:0007280 (presumptive endocardium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003084 (heart primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.09e-81 | FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_ac04dc5960050155dd63a7248fccccfe | p@chr1:137747392..137747402, - |
| 1.09e-81 | FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_ac04dc5960050155dd63a7248fccccfe | p@chr9:24549775..24549776, - |
| 1.09e-81 | FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_ac04dc5960050155dd63a7248fccccfe | p@chr4:147375434..147375447, + |
| 1.09e-81 | FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_ac04dc5960050155dd63a7248fccccfe | p@chr9:24549775..24549776, - |
| 1.09e-81 | FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_ac04dc5960050155dd63a7248fccccfe | p@chr1:137747392..137747402, - |
| 1.09e-81 | FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_ac04dc5960050155dd63a7248fccccfe | p@chr4:147375434..147375447, + |
| 1.88e-78 | FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_44554ee53dee9a225aeeb97deba83156 | p@chr4:140980456..140980463, + |
| 1.88e-78 | FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_44554ee53dee9a225aeeb97deba83156 | p@chr4:140980456..140980463, + |
| 1.92e-77 | FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_cfb3bcaf0d35e3b754443fc2e9f6c83a | p@chr12:113728951..113728965, + |
| 1.92e-77 | FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_cfb3bcaf0d35e3b754443fc2e9f6c83a | p@chr12:113728951..113728965, + |
| 1.92e-77 | FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_cfb3bcaf0d35e3b754443fc2e9f6c83a | p@chr1:137737483..137737497, - |
| 1.92e-77 | FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_cfb3bcaf0d35e3b754443fc2e9f6c83a | p@chr1:137737483..137737497, - |
| 2.14e-77 | FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_87d018e522711c770dcb5927926bc9e8 | p@chr4:147375200..147375220, + |
| 2.14e-77 | FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_87d018e522711c770dcb5927926bc9e8 | p@chr4:147375200..147375220, + |
| 2.14e-77 | FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_87d018e522711c770dcb5927926bc9e8 | p@chr19:36187511..36187515, - |
| 2.14e-77 | FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_87d018e522711c770dcb5927926bc9e8 | p@chr19:36187511..36187515, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_4726d7b5a384823cd17a6703515e88e4 | p2@Mov10l1 |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55571909..55571953, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55579265..55579297, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55563577..55563611, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137744668..137744681, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55584197..55584239, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137744333..137744352, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137743272..137743307, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55563577..55563611, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137747289..137747313, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55584272..55584298, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137744668..137744681, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr11:58815923..58815951, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55568737..55568746, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137744550..137744565, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr5:120286706..120286736, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55586837..55586880, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr4:147375901..147375913, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55572120..55572173, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr19:36193772..36193793, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55586837..55586880, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55568937..55568988, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_4726d7b5a384823cd17a6703515e88e4 | p2@Mov10l1 |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137744611..137744621, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55568790..55568803, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55579265..55579297, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137747953..137747967, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137747953..137747967, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr11:65461897..65461929, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55584272..55584298, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr4:147375901..147375913, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137744333..137744352, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137744636..137744654, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137747382..137747385, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55584663..55584731, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137743272..137743307, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55572120..55572173, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55581579..55581620, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55571909..55571953, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55584197..55584239, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55565785..55565833, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137745434..137745445, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55581579..55581620, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137744550..137744565, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55568737..55568746, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55565785..55565833, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137747382..137747385, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55584663..55584731, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137744636..137744654, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55568937..55568988, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr5:120286706..120286736, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137745434..137745445, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr19:36193772..36193793, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr11:65461897..65461929, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137747289..137747313, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr11:58815923..58815951, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_4726d7b5a384823cd17a6703515e88e4 | p@chr14:55568790..55568803, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_4726d7b5a384823cd17a6703515e88e4 | p@chr1:137744611..137744621, + |
| 1.2e-73 | FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_119fcdc75a31de64737a42fe955f11be | p@chr1:137742152..137742184, - |
| 1.2e-73 | FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_119fcdc75a31de64737a42fe955f11be | p@chr1:137742152..137742184, - |
| 1.46e-72 | FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_5245bf36f71938f823a820c64516df24 | p2@Tnni3 |
| 1.46e-72 | FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_5245bf36f71938f823a820c64516df24 | p@chr14:55577329..55577367, - |
| 1.46e-72 | FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_5245bf36f71938f823a820c64516df24 | p@chr1:137742470..137742481, + |
| 1.46e-72 | FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_5245bf36f71938f823a820c64516df24 | p@chr16:5431481..5431510, + |
| 1.46e-72 | FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_5245bf36f71938f823a820c64516df24 | p2@Tnni3 |
| 1.46e-72 | FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_5245bf36f71938f823a820c64516df24 | p@chr1:137742470..137742481, + |
| 1.46e-72 | FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_5245bf36f71938f823a820c64516df24 | p@chr14:55577329..55577367, - |
| 1.46e-72 | FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_5245bf36f71938f823a820c64516df24 | p@chr16:5431481..5431510, + |
| 1.63e-72 | FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_4dde01754ca4fb0adae0478d93ce8bf8 | p5@Nebl |
| 1.63e-72 | FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_4dde01754ca4fb0adae0478d93ce8bf8 | p11@Arhgap31 |
| 1.63e-72 | FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_4dde01754ca4fb0adae0478d93ce8bf8 | p5@Nebl |
| 1.63e-72 | FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_4dde01754ca4fb0adae0478d93ce8bf8 | p@chr5:58108164..58108178, + |
| 1.63e-72 | FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_4dde01754ca4fb0adae0478d93ce8bf8 | p1@ENSMUST00000154140 |
| 1.63e-72 | FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_4dde01754ca4fb0adae0478d93ce8bf8 | p1@ENSMUST00000154140 |
| 1.63e-72 | FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_4dde01754ca4fb0adae0478d93ce8bf8 | p@chr19:36193739..36193752, - |
| 1.63e-72 | FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_4dde01754ca4fb0adae0478d93ce8bf8 | p@chr19:36193739..36193752, - |
| 1.63e-72 | FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_4dde01754ca4fb0adae0478d93ce8bf8 | p11@Arhgap31 |
| 1.63e-72 | FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_4dde01754ca4fb0adae0478d93ce8bf8 | p@chr10:53062244..53062249, + |
| 1.63e-72 | FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_4dde01754ca4fb0adae0478d93ce8bf8 | p@chr5:58108164..58108178, + |
| 1.63e-72 | FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_4dde01754ca4fb0adae0478d93ce8bf8 | p@chr10:53062244..53062249, + |
| 1.82e-72 | FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_09f5f002ce4aef7467aa85a1be272011 | p@chr9:24529233..24529237, - |
| 1.82e-72 | FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_09f5f002ce4aef7467aa85a1be272011 | p@chr9:24529233..24529237, - |
| 2.03e-72 | FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_907e061ae2fb718770cb6c87f29ffbad | p6@Usp20 |
| 2.03e-72 | FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_907e061ae2fb718770cb6c87f29ffbad | p6@Usp20 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The fused aspects of ventral mesoderm, which have migrated from either side of the prechordal plate, and fused ventrally, just behind the cement gland. They will give rise to the endocardium at NF stage 27&28.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: develops_from lateral mesoderm (TAO:0001065)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
